ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd22n18 |
|---|---|
| Clone Library Name | barley_pub |
>RPOC2_WHEAT (Q9XPS9) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1479 Score = 436 bits (1122), Expect = e-122 Identities = 220/229 (96%), Positives = 220/229 (96%) Frame = +3 Query: 3 FYLXENSKLTQRIYHTNSQFVRTCLVVNWEQEEKEKAGASLVEVRANDLIRDFLRIELVK 182 F ENSKLTQRIYHTNSQFVRTCLVVNWEQEEKEKAGASLVEVRANDLIRDFLRIELVK Sbjct: 925 FISHENSKLTQRIYHTNSQFVRTCLVVNWEQEEKEKAGASLVEVRANDLIRDFLRIELVK 984 Query: 183 STISYTRKRYDRTSGGPTPHNRLDRANSNSFYSKAKIESLSQHQEAIGTLLNRNKEYQSL 362 STISYTRKRYDRTS GP PHNRLDRAN NSFYSKAKIESLSQH EAIGTLLNRNKEY SL Sbjct: 985 STISYTRKRYDRTSAGPIPHNRLDRANINSFYSKAKIESLSQHPEAIGTLLNRNKEYHSL 1044 Query: 363 MILSASNCSRIGLFKNSKHPNAIKEWNPRIPILEIFGPLGAIVASISHFSSSYYLLTHNK 542 MILSASNCSRIGLFKNSKHPNAIKEWNPRIPI EIFGPLGAIVASISHFSSSYYLLTHNK Sbjct: 1045 MILSASNCSRIGLFKNSKHPNAIKEWNPRIPIREIFGPLGAIVASISHFSSSYYLLTHNK 1104 Query: 543 ILLKKYLFVDNLKQTFQVLQELKYSLIDENKRISNFDSNIMLDPFLLNC 689 ILLKKYLFVDNLKQTFQVLQELKYSLIDENKRISNFDSNIMLDPFLLNC Sbjct: 1105 ILLKKYLFVDNLKQTFQVLQELKYSLIDENKRISNFDSNIMLDPFLLNC 1153
>RPOC2_SACOF (Q6ENX1) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1534 Score = 384 bits (985), Expect = e-106 Identities = 197/228 (86%), Positives = 208/228 (91%) Frame = +3 Query: 3 FYLXENSKLTQRIYHTNSQFVRTCLVVNWEQEEKEKAGASLVEVRANDLIRDFLRIELVK 182 F ENSKLTQRIYHTNSQFVRTCLVVNWEQEEKE A ASLVEVR NDLIRDFLRIELVK Sbjct: 969 FISHENSKLTQRIYHTNSQFVRTCLVVNWEQEEKEGARASLVEVRTNDLIRDFLRIELVK 1028 Query: 183 STISYTRKRYDRTSGGPTPHNRLDRANSNSFYSKAKIESLSQHQEAIGTLLNRNKEYQSL 362 STISYTR+RYDRTS G P+NRLDR N+NSFYSKAKI+SLSQHQE IGTLLNRNKEY SL Sbjct: 1029 STISYTRRRYDRTSVGLIPNNRLDRNNTNSFYSKAKIQSLSQHQEVIGTLLNRNKEYPSL 1088 Query: 363 MILSASNCSRIGLFKNSKHPNAIKEWNPRIPILEIFGPLGAIVASISHFSSSYYLLTHNK 542 MIL ASNCSRIGLFKNSK+PNA+KE NPRIPI +IFG LG IV SIS+FSSSYYLLTHN+ Sbjct: 1089 MILLASNCSRIGLFKNSKYPNAVKESNPRIPIRDIFGLLGVIVPSISNFSSSYYLLTHNQ 1148 Query: 543 ILLKKYLFVDNLKQTFQVLQELKYSLIDENKRISNFDSNIMLDPFLLN 686 ILLKKYLF+DNLKQTFQVLQ LKYSLIDENKRISNFDSNIML+PF LN Sbjct: 1149 ILLKKYLFLDNLKQTFQVLQGLKYSLIDENKRISNFDSNIMLEPFHLN 1196
>RPOC2_SACHY (Q6L3A5) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1534 Score = 384 bits (985), Expect = e-106 Identities = 197/228 (86%), Positives = 208/228 (91%) Frame = +3 Query: 3 FYLXENSKLTQRIYHTNSQFVRTCLVVNWEQEEKEKAGASLVEVRANDLIRDFLRIELVK 182 F ENSKLTQRIYHTNSQFVRTCLVVNWEQEEKE A ASLVEVR NDLIRDFLRIELVK Sbjct: 969 FISHENSKLTQRIYHTNSQFVRTCLVVNWEQEEKEGARASLVEVRTNDLIRDFLRIELVK 1028 Query: 183 STISYTRKRYDRTSGGPTPHNRLDRANSNSFYSKAKIESLSQHQEAIGTLLNRNKEYQSL 362 STISYTR+RYDRTS G P+NRLDR N+NSFYSKAKI+SLSQHQE IGTLLNRNKEY SL Sbjct: 1029 STISYTRRRYDRTSVGLIPNNRLDRNNTNSFYSKAKIQSLSQHQEVIGTLLNRNKEYPSL 1088 Query: 363 MILSASNCSRIGLFKNSKHPNAIKEWNPRIPILEIFGPLGAIVASISHFSSSYYLLTHNK 542 MIL ASNCSRIGLFKNSK+PNA+KE NPRIPI +IFG LG IV SIS+FSSSYYLLTHN+ Sbjct: 1089 MILLASNCSRIGLFKNSKYPNAVKESNPRIPIRDIFGLLGVIVPSISNFSSSYYLLTHNQ 1148 Query: 543 ILLKKYLFVDNLKQTFQVLQELKYSLIDENKRISNFDSNIMLDPFLLN 686 ILLKKYLF+DNLKQTFQVLQ LKYSLIDENKRISNFDSNIML+PF LN Sbjct: 1149 ILLKKYLFLDNLKQTFQVLQGLKYSLIDENKRISNFDSNIMLEPFHLN 1196
>RPOC2_MAIZE (P16025) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1527 Score = 378 bits (970), Expect = e-104 Identities = 194/228 (85%), Positives = 206/228 (90%) Frame = +3 Query: 3 FYLXENSKLTQRIYHTNSQFVRTCLVVNWEQEEKEKAGASLVEVRANDLIRDFLRIELVK 182 F ENSKLTQRIYHTNSQFVRTCLVVNWEQEEKE A ASLVEV+ NDLIRDFLRIELVK Sbjct: 962 FISHENSKLTQRIYHTNSQFVRTCLVVNWEQEEKEGARASLVEVKTNDLIRDFLRIELVK 1021 Query: 183 STISYTRKRYDRTSGGPTPHNRLDRANSNSFYSKAKIESLSQHQEAIGTLLNRNKEYQSL 362 STI YTR+RYDRTS G P+NRLDR N+NSFYSKAKI+SLSQHQE IGTLLNRNKEY SL Sbjct: 1022 STILYTRRRYDRTSVGLIPNNRLDRNNTNSFYSKAKIQSLSQHQEVIGTLLNRNKEYPSL 1081 Query: 363 MILSASNCSRIGLFKNSKHPNAIKEWNPRIPILEIFGPLGAIVASISHFSSSYYLLTHNK 542 MIL ASNCSRIGLFKNSK+PNA+KE NPRIPI +IFG LG IV SIS+FSSSYYLLTHN+ Sbjct: 1082 MILLASNCSRIGLFKNSKYPNAVKESNPRIPIRDIFGLLGVIVPSISNFSSSYYLLTHNQ 1141 Query: 543 ILLKKYLFVDNLKQTFQVLQELKYSLIDENKRISNFDSNIMLDPFLLN 686 ILLKKYLF+DNLKQT QVLQ LKYSLIDENKRISNFDSNIML+PF LN Sbjct: 1142 ILLKKYLFLDNLKQTLQVLQGLKYSLIDENKRISNFDSNIMLEPFHLN 1189
>RPOC2_ORYNI (Q6ENI2) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1513 Score = 352 bits (904), Expect = 5e-97 Identities = 182/235 (77%), Positives = 201/235 (85%), Gaps = 7/235 (2%) Frame = +3 Query: 3 FYLXENSKLTQRIYHTNSQFVRTCLVVNWEQEEKEKAGASLVEVRANDLIRDFLRIELVK 182 F ENSKLTQRIYHTNSQFVRTCLV+NWEQEEKE+A ASLVE+RAN LIRDFLRI L+K Sbjct: 943 FISHENSKLTQRIYHTNSQFVRTCLVLNWEQEEKEEARASLVEIRANGLIRDFLRIGLIK 1002 Query: 183 STISYTRKRYDRTSGGPTPHNRLDRANSNSFYSKAKIESLSQHQEAIGTLLNRNKEYQSL 362 STISYTRKRYD S G HNRLDR N+NSFYSKAKI+SLSQHQEAIGTLLNRNKEYQSL Sbjct: 1003 STISYTRKRYDSRSAGLILHNRLDRTNTNSFYSKAKIQSLSQHQEAIGTLLNRNKEYQSL 1062 Query: 363 MILSASNCSRIGLFKNSKHPNAIKEWNPRIPILEIF-------GPLGAIVASISHFSSSY 521 M+LSASNCSRIG FKNSK+PN +KE NPRIPI + F G LG I SIS+FSSSY Sbjct: 1063 MVLSASNCSRIGFFKNSKNPNGVKESNPRIPIPKFFGLFRNFSGLLGTIAPSISNFSSSY 1122 Query: 522 YLLTHNKILLKKYLFVDNLKQTFQVLQELKYSLIDENKRISNFDSNIMLDPFLLN 686 YLLT+N+ILLKK+L +DNLKQ F+VLQ LK+SLI+EN+R SNFDSNIMLDPF LN Sbjct: 1123 YLLTYNQILLKKHLLLDNLKQNFKVLQGLKHSLINENQRTSNFDSNIMLDPFQLN 1177
>RPOC2_ORYSA (P12093) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1513 Score = 350 bits (899), Expect = 2e-96 Identities = 181/235 (77%), Positives = 201/235 (85%), Gaps = 7/235 (2%) Frame = +3 Query: 3 FYLXENSKLTQRIYHTNSQFVRTCLVVNWEQEEKEKAGASLVEVRANDLIRDFLRIELVK 182 F ENSKLTQRIYHTNSQFVRTCLV+NWEQEEKE+A ASLVE+RAN LIRDFLRI L+K Sbjct: 943 FISHENSKLTQRIYHTNSQFVRTCLVLNWEQEEKEEARASLVEIRANGLIRDFLRIGLIK 1002 Query: 183 STISYTRKRYDRTSGGPTPHNRLDRANSNSFYSKAKIESLSQHQEAIGTLLNRNKEYQSL 362 STISYTRKRYD S G HNRLDR N+NSFYSKAKI+SLSQHQEAIGTLLNRNKEYQSL Sbjct: 1003 STISYTRKRYDSRSAGLILHNRLDRTNTNSFYSKAKIQSLSQHQEAIGTLLNRNKEYQSL 1062 Query: 363 MILSASNCSRIGLFKNSKHPNAIKEWNPRIPILEIF-------GPLGAIVASISHFSSSY 521 M+LSASNCSRIG FKNSK+PN +KE NPRIPI + + G LG I SIS+FSSSY Sbjct: 1063 MVLSASNCSRIGFFKNSKNPNGVKESNPRIPIPKFWGLFRNFSGLLGTIAPSISNFSSSY 1122 Query: 522 YLLTHNKILLKKYLFVDNLKQTFQVLQELKYSLIDENKRISNFDSNIMLDPFLLN 686 YLLT+N+ILLKK+L +DNLKQ F+VLQ LK+SLI+EN+R SNFDSNIMLDPF LN Sbjct: 1123 YLLTYNQILLKKHLLLDNLKQNFKVLQGLKHSLINENQRTSNFDSNIMLDPFQLN 1177
>RPOC2_CALFE (Q7YJY0) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1377 Score = 234 bits (597), Expect = 2e-61 Identities = 137/238 (57%), Positives = 163/238 (68%), Gaps = 10/238 (4%) Frame = +3 Query: 3 FYLXENSKLTQRIYHTNSQFVRTCLVVNWEQEEK---EKAGASLVEVRANDLIRDFLRIE 173 + L N K + I HT+ Q VRTCLV+NW+Q+ E+ AS VEVRAN LIRDFL+I+ Sbjct: 816 YILYGNGKPIRGISHTSLQLVRTCLVLNWDQDRNGSIEEVHASFVEVRANGLIRDFLKID 875 Query: 174 LVKSTISYTRKRYDRTSGGPTPHNRLDRANSNSFYSKAKIESLSQHQEAIGTLLNRNKEY 353 LVKS I Y+ KR D TS G P+N DR N N FY KA+I+SL+QHQ I TLLNRNKE Sbjct: 876 LVKSPILYSGKRNDTTSSGFIPNNGSDRTNINPFYFKARIQSLTQHQGTIRTLLNRNKEC 935 Query: 354 QSLMILSASNCSRIGLFKNSKHPNAIKE-----WNPRIPILEIFGPLGAIVASISHFSSS 518 QS +ILS+S+CSRIG F SK KE +P IPI GPLG V I++F SS Sbjct: 936 QSFLILSSSDCSRIGSFNGSKSHKVTKESITIKEDPTIPIRNSLGPLGT-VPKIANFDSS 994 Query: 519 YYLLTHNKILLKKYLFVDNLKQTFQVLQELKYSLIDENKRISNFD--SNIMLDPFLLN 686 YYL+THN+ILL KYL +DNLKQTFQV LKY L+DEN RI N D SNI+ +PF LN Sbjct: 995 YYLITHNQILLNKYLSLDNLKQTFQV---LKYYLMDENGRIYNPDPRSNIIFNPFDLN 1049
>RPOC2_PHAAO (Q3BAQ2) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1388 Score = 226 bits (577), Expect = 4e-59 Identities = 127/237 (53%), Positives = 158/237 (66%), Gaps = 9/237 (3%) Frame = +3 Query: 3 FYLXENSKLTQRIYHTNSQFVRTCLVVNWEQEEK----EKAGASLVEVRANDLIRDFLRI 170 + L EN K + I HT+ Q VR CLV+ W+QE+K EK AS VE+R NDL+ F+RI Sbjct: 816 YILYENGKSIRGISHTSIQLVRACLVLTWDQEKKSSIEEKVHASFVEIRTNDLLCYFIRI 875 Query: 171 ELVKSTISYTRKRYDRTSGGPTPHNRLDRAN-SNSFYSKAKIESLSQHQEAIGTLLNRNK 347 ELVKST+SYT KRYD G +N LDR + N F SKAKI+ QHQ +GTLLNRNK Sbjct: 876 ELVKSTLSYTEKRYDTAGSGLISNNELDRIHRKNPFDSKAKIQIFPQHQGTLGTLLNRNK 935 Query: 348 EYQSLMILSASNCSRIGLFKNSKHPNAIKEWNPRIPILEIFGPLGAIVASISHFSSSYYL 527 E QS +ILS+SNCSRIG F S++ NA KE +P PI + GPLG IV I + SSYYL Sbjct: 936 ECQSFLILSSSNCSRIGPFNTSRYNNATKELDPMTPIRYLLGPLGTIVPRIVNSRSSYYL 995 Query: 528 LTHNKILLKKYLFVDNLKQTFQVLQ--ELKYSLIDENKRISNFD--SNIMLDPFLLN 686 T+N++ LKK ++N +QTFQVLQ +Y +DEN RI N D SNI+ + F LN Sbjct: 996 RTYNQVFLKKSFLLENFQQTFQVLQVPPFQYCFLDENSRIYNPDPCSNIIWNSFHLN 1052
>RPOC2_AMBTC (P60289) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1373 Score = 213 bits (543), Expect = 3e-55 Identities = 128/240 (53%), Positives = 159/240 (66%), Gaps = 12/240 (5%) Frame = +3 Query: 3 FYLXENSKLTQRIYHTNSQFVRTCLVVNWEQE-----EKEKAGASLVEVRANDLIRDFLR 167 + L + K + I+HT+ Q VRTCLV+NW+Q+ E+E+A SL EVR NDLIR+F+R Sbjct: 809 YILYGDGKPIRGIFHTSIQLVRTCLVLNWDQDRAGSIEEEEAYTSLAEVRVNDLIRNFIR 868 Query: 168 IELVKSTISYTRKRYDRTSGGPTPHNRLDRANSNSFYSKAKIESLSQHQEAIGTLLNRNK 347 I+LVKS IS T K D G P+N DR N+N F+SKAK +SLSQHQ I TLLNRNK Sbjct: 869 IDLVKSPISSTGKENDMAGSGLIPNNGSDRINTNPFFSKAKTQSLSQHQGTIRTLLNRNK 928 Query: 348 EYQ--SLMILSASNCSRIGLFKNSKHPNAIKE---WNPRIPILEIFGPLGAIVASISHFS 512 E Q SLM+LS+SNCSRIG SK+ N KE +P I I GPLG V +I +FS Sbjct: 929 EGQGESLMVLSSSNCSRIGPLNGSKYHNVTKESIQEDPMISIRNSLGPLGT-VPNILNFS 987 Query: 513 SSYYLLTHNKILLKKYLFVDNLKQTFQVLQELKYSLIDENKRISNFD--SNIMLDPFLLN 686 SSY+ +THN+IL KYL DN ++TF V K +DEN+RI N D SNI+L PF LN Sbjct: 988 SSYHSITHNEILFNKYLLPDNSRETFLV---PKSYFMDENRRIYNLDPCSNIILTPFNLN 1044
>RPOC2_ACOCL (Q3V544) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1386 Score = 210 bits (535), Expect = 3e-54 Identities = 128/237 (54%), Positives = 153/237 (64%), Gaps = 9/237 (3%) Frame = +3 Query: 3 FYLXENSKLTQRIYHTNSQFVRTCLVVNWEQEEK---EKAGASLVEVRANDLIRDFLRIE 173 + L N K + I HT+ Q VRTCLV+NW+QE+ E AS VEVRANDLIRDF+RIE Sbjct: 815 YILYGNGKPIRGISHTSIQLVRTCLVLNWDQEQNGSIEGVRASFVEVRANDLIRDFIRIE 874 Query: 174 LVKSTISYTRKRYDRTSGGPTPHNRLDRANSNSFYSKAKIESLSQHQEAIGTLLNRNKEY 353 L KS I YT KR D G N DR N N Y K KI S QHQ +GTLLNRNKE Sbjct: 875 LCKSAILYTGKRKDIAGSGLIHDNVSDRTNINPVYLKDKIPSFIQHQGTVGTLLNRNKEC 934 Query: 354 QSLMILSASNCSRIGLFKNSKHPNAIKE---WNPRIPILEIFGPLGAIVASISH-FSSSY 521 QSL++LS+SNC RIG F SK+ N KE +P IPI + G LG V I++ F SY Sbjct: 935 QSLILLSSSNCFRIGPFNGSKYHNVPKESIKEDPIIPIRDSLGLLGTTVPKIANFFYLSY 994 Query: 522 YLLTHNKILLKKYLFVDNLKQTFQVLQELKYSLIDENKRISNFD--SNIMLDPFLLN 686 +++THN ILL KYL D+LKQ FQV L+Y L+DEN+RI N D SNI+ + F LN Sbjct: 995 HVITHNHILLTKYLLRDHLKQAFQV---LRYCLMDENRRIYNPDPCSNIIFNAFDLN 1048
>RPOC2_TOBAC (P38550) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1388 Score = 203 bits (516), Expect = 5e-52 Identities = 128/243 (52%), Positives = 161/243 (66%), Gaps = 15/243 (6%) Frame = +3 Query: 3 FYLXENSKLTQRIYHTNSQFVRTCLVVNWEQEEK----EKAGASLVEVRANDLIRDFLRI 170 + L N K + I T+ Q VRTCLV+NW Q++K E+A AS VE+R N LIR FLRI Sbjct: 811 YILYGNGKPIRGISDTSIQLVRTCLVLNWNQDKKSSSCEEARASFVEIRTNGLIRHFLRI 870 Query: 171 ELVKSTISYTRKRYDRTSGGPTPHNRLDRANSNSF-----YSKAKIE-SLSQHQEAIGTL 332 LVKS ISY KR D + G N D N N F YSKAKI+ S++Q Q I TL Sbjct: 871 NLVKSPISYIGKRNDPSGSGLLSDNGSDCTNINPFSSIYSYSKAKIQQSINQPQGTIHTL 930 Query: 333 LNRNKEYQSLMILSASNCSRIGLFKNSKHPNAIK---EWNPRIPILEIFGPLGAIVASIS 503 LNRNKE QSL+ILSA+NCSR+G FK+ K+ + IK + +P IPI GPLG + I Sbjct: 931 LNRNKECQSLIILSAANCSRMGPFKDVKYHSVIKKSIKKDPLIPIRNSLGPLGTSL-PIE 989 Query: 504 HFSSSYYLLTHNKILLKKYLFVDNLKQTFQVLQELKYSLIDENKRISNFD--SNIMLDPF 677 +F SSY+L+THN+IL+ YL +DNLKQTFQV+ + KY L+DEN +I N D NI+L+PF Sbjct: 990 NFYSSYHLITHNQILVTNYLQLDNLKQTFQVI-KFKYYLMDENGKIFNPDPCRNIILNPF 1048 Query: 678 LLN 686 LN Sbjct: 1049 NLN 1051
>RPOC2_NICTO (Q33C48) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1392 Score = 203 bits (516), Expect = 5e-52 Identities = 129/243 (53%), Positives = 160/243 (65%), Gaps = 15/243 (6%) Frame = +3 Query: 3 FYLXENSKLTQRIYHTNSQFVRTCLVVNWEQEEK----EKAGASLVEVRANDLIRDFLRI 170 + L N K + I T+ Q VRTCLV+NW Q++K E+A AS VE+R N LIR FLRI Sbjct: 815 YILYGNGKPIRGISDTSIQLVRTCLVLNWNQDKKSSSCEEARASFVEIRTNGLIRHFLRI 874 Query: 171 ELVKSTISYTRKRYDRTSGGPTPHNRLDRANSNSF-----YSKAKIE-SLSQHQEAIGTL 332 LVKS ISY KR D + G N D N N F YSKAKI+ SL+Q Q I TL Sbjct: 875 NLVKSPISYIGKRNDPSGSGLLSDNGSDCTNINPFSSIYSYSKAKIQQSLNQPQGTIHTL 934 Query: 333 LNRNKEYQSLMILSASNCSRIGLFKNSKHPNAIKE---WNPRIPILEIFGPLGAIVASIS 503 LNRNKE QSL+ILSA+NCSR+G FK+ K+ + IKE +P IPI GPLG + I Sbjct: 935 LNRNKECQSLIILSAANCSRMGPFKDVKYHSVIKESIKKDPLIPIRNSLGPLGTSL-PIE 993 Query: 504 HFSSSYYLLTHNKILLKKYLFVDNLKQTFQVLQELKYSLIDENKRISNFD--SNIMLDPF 677 +F SSY+L+THN+IL+ YL +DNLKQTFQV+ + Y L+DEN +I N D NI+L+PF Sbjct: 994 NFYSSYHLITHNQILVTNYLQLDNLKQTFQVI-KFHYYLMDENGKIFNPDPCRNIILNPF 1052 Query: 678 LLN 686 LN Sbjct: 1053 NLN 1055
>RPOC2_NICSY (Q3C1G9) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1392 Score = 203 bits (516), Expect = 5e-52 Identities = 128/243 (52%), Positives = 161/243 (66%), Gaps = 15/243 (6%) Frame = +3 Query: 3 FYLXENSKLTQRIYHTNSQFVRTCLVVNWEQEEK----EKAGASLVEVRANDLIRDFLRI 170 + L N K + I T+ Q VRTCLV+NW Q++K E+A AS VE+R N LIR FLRI Sbjct: 815 YILYGNGKPIRGISDTSIQLVRTCLVLNWNQDKKSSSCEEARASFVEIRTNGLIRHFLRI 874 Query: 171 ELVKSTISYTRKRYDRTSGGPTPHNRLDRANSNSF-----YSKAKIE-SLSQHQEAIGTL 332 LVKS ISY KR D + G N D N N F YSKAKI+ S++Q Q I TL Sbjct: 875 NLVKSPISYIGKRNDPSGSGLLSDNGSDCTNINPFSSIYSYSKAKIQQSINQPQGTIHTL 934 Query: 333 LNRNKEYQSLMILSASNCSRIGLFKNSKHPNAIK---EWNPRIPILEIFGPLGAIVASIS 503 LNRNKE QSL+ILSA+NCSR+G FK+ K+ + IK + +P IPI GPLG + I Sbjct: 935 LNRNKECQSLIILSAANCSRMGPFKDVKYHSVIKKSIKKDPLIPIRNSLGPLGTSL-PIE 993 Query: 504 HFSSSYYLLTHNKILLKKYLFVDNLKQTFQVLQELKYSLIDENKRISNFD--SNIMLDPF 677 +F SSY+L+THN+IL+ YL +DNLKQTFQV+ + KY L+DEN +I N D NI+L+PF Sbjct: 994 NFYSSYHLITHNQILVTNYLQLDNLKQTFQVI-KFKYYLMDENGKIFNPDPCRNIILNPF 1052 Query: 678 LLN 686 LN Sbjct: 1053 NLN 1055
>RPOC2_SOLTU (Q2VEI6) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1392 Score = 201 bits (512), Expect = 1e-51 Identities = 129/243 (53%), Positives = 160/243 (65%), Gaps = 15/243 (6%) Frame = +3 Query: 3 FYLXENSKLTQRIYHTNSQFVRTCLVVNWEQEEK----EKAGASLVEVRANDLIRDFLRI 170 + L N K + I T+ Q VRTCLV+NW Q++K E+A AS VE+R N LIR FLRI Sbjct: 815 YILYGNGKPIRGISDTSIQLVRTCLVLNWNQDKKSSSCEEARASFVEIRTNGLIRHFLRI 874 Query: 171 ELVKSTISYTRKRYDRTSGGPTPHNRLDRANSNSF-----YSKAKIE-SLSQHQEAIGTL 332 LVKS ISY KR D + G N D N N F Y KAKI+ SL+Q Q I TL Sbjct: 875 NLVKSPISYIGKRNDPSGSGLLSDNGSDCTNINPFSAIYSYPKAKIQQSLNQPQGTIHTL 934 Query: 333 LNRNKEYQSLMILSASNCSRIGLFKNSKHPNAIKE---WNPRIPILEIFGPLGAIVASIS 503 LNRNKE QSL+ILSA+NCSR+ FK+ K+ + IKE +P IPI GPLG + I Sbjct: 935 LNRNKECQSLIILSAANCSRMEPFKDVKYHSVIKESIKKDPLIPIRNSLGPLGTCL-PIE 993 Query: 504 HFSSSYYLLTHNKILLKKYLFVDNLKQTFQVLQELKYSLIDENKRISNFD--SNIMLDPF 677 +F SSY+L+THN+IL+ KYL +DNLKQTFQV+ +LKY L+DEN +I N D NI+L+P Sbjct: 994 NFYSSYHLITHNQILVTKYLQLDNLKQTFQVI-KLKYYLMDENGKIFNPDPCRNIILNPV 1052 Query: 678 LLN 686 LN Sbjct: 1053 NLN 1055
>RPOC2_EUCGG (Q49L08) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1392 Score = 199 bits (506), Expect = 7e-51 Identities = 123/240 (51%), Positives = 157/240 (65%), Gaps = 12/240 (5%) Frame = +3 Query: 3 FYLXENSKLTQRIYHTNSQFVRTCLVVNWEQEEK----EKAGASLVEVRANDLIRDFLRI 170 + + N K + I T+ Q VRTCL++NW+Q++K E+A S VEV N LIRDFLRI Sbjct: 816 YIVYRNGKPIRGISDTSIQLVRTCLILNWDQDKKSSSIEEAHTSFVEVSTNGLIRDFLRI 875 Query: 171 ELVKSTISYTRKRYDRTSGG--PTPHNRLDRANSNSFYSKAKIESL-SQHQEAIGTLLNR 341 +LVK ISY RKR D + G N D NSN FYSK KI+ L SQ+Q I TLLN+ Sbjct: 876 DLVKFPISYLRKRNDPSGSGLISDSDNVSDHTNSNPFYSKTKIQQLLSQNQGTIRTLLNK 935 Query: 342 NKEYQSLMILSASNCSRIGLFKNSKHPNAIKEWNPRIPILEI---FGPLGAIVASISHFS 512 NKE SL+ILS+SNC R+G F K+ N IKE + PI++I GPLG ++ + +F Sbjct: 936 NKECPSLIILSSSNCFRMGPFNAGKYHNVIKESIKKDPIIKIRNSIGPLGTVLQFV-NFY 994 Query: 513 SSYYLLTHNKILLKKYLFVDNLKQTFQVLQELKYSLIDENKRISNFD--SNIMLDPFLLN 686 S YYL+THN IL+ KYL ++NLKQTFQV + Y L+DEN RI N D SNI+L+ F LN Sbjct: 995 SFYYLITHNPILVTKYLQLENLKQTFQV---INYYLMDENGRILNPDSCSNIVLNSFNLN 1051
>RPOC2_NYMAL (Q6EW58) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1401 Score = 198 bits (503), Expect = 1e-50 Identities = 123/225 (54%), Positives = 150/225 (66%), Gaps = 10/225 (4%) Frame = +3 Query: 3 FYLXENSKLTQRIYHTNSQFVRTCLVVNWEQEEK---EKAGASLVEVRANDLIRDFLRIE 173 + L + K + I HT+ Q VRTCLV+NW+Q++K EK AS EVRANDLIR F+RI+ Sbjct: 820 YILYGDGKPIRGISHTSIQLVRTCLVLNWDQDKKGSIEKVQASSAEVRANDLIRYFIRID 879 Query: 174 LVKSTISYTRKRYDRTSGGPTPHNRLDRANSNSFYSKAKIESLSQHQEAIGTLLNRNKEY 353 LVKS I YT KR DR SG P AN+N F SK KI+SLSQHQ + T LNRNKE Sbjct: 880 LVKSPILYTGKRNDR-SGSVIPDTGSYCANTNLFSSKVKIKSLSQHQGTVRTFLNRNKEG 938 Query: 354 QSLMILSASNCSRIGLFKNSKHPNAIKE-----WNPRIPILEIFGPLGAIVASISHFSSS 518 QSL++ S+SNCSRI + SK+ N KE + IPIL + GPLG V I +FS S Sbjct: 939 QSLIVFSSSNCSRINV---SKYHNVTKESIKEKEDTPIPILNLLGPLGT-VPKIHNFSPS 994 Query: 519 YYLLTHNKILLKKYLFVDNL--KQTFQVLQELKYSLIDENKRISN 647 Y+ +THN+ILL KYL +DN KQTFQ+ LKY L+DEN RISN Sbjct: 995 YHSITHNEILLNKYLILDNKNPKQTFQL---LKYYLVDENGRISN 1036
>RPOC2_ATRBE (Q8S8Y1) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1389 Score = 196 bits (497), Expect = 7e-50 Identities = 127/241 (52%), Positives = 159/241 (65%), Gaps = 13/241 (5%) Frame = +3 Query: 3 FYLXENSKLTQRIYHTNSQFVRTCLVVNWEQEEK----EKAGASLVEVRANDLIRDFLRI 170 + L N K + I T+ Q VRTCLV+NW Q++K E+A AS VE+R N LIR FLRI Sbjct: 815 YILYGNGKPIRGISDTSIQLVRTCLVLNWNQDKKSSSCEEARASFVEIRTNGLIRHFLRI 874 Query: 171 ELVKSTISYTRKRYDRTSGGPTPHNRLDRANSNSF-----YSKAKI-ESLSQHQEAIGTL 332 LVKS ISY KR D + G N D N N F YSKAKI +SL+Q Q I TL Sbjct: 875 NLVKSPISYIGKRNDPSGSGLLSDNGSDCTNINPFSSIYSYSKAKIQQSLNQPQGTIHTL 934 Query: 333 LNRNKEYQSLMILSASNCSRIGLFK-NSKHPNAIKEWNPRIPILEIFGPLGAIVASISHF 509 LNRNKE QSL+ILS++NCSR+G K +S ++IK+ +P IPI GPLG + I +F Sbjct: 935 LNRNKECQSLIILSSANCSRMGTLKYHSVIKDSIKK-DPLIPIRNSLGPLGTCL-PIENF 992 Query: 510 SSSYYLLTHNKILLKKYLFVDNLKQTFQVLQELKYSLIDENKRISNFD--SNIMLDPFLL 683 SSY L+THN+IL+ YL +DNLKQTFQV+ + KY L+DEN +I N D NI+L+PF L Sbjct: 993 YSSYRLITHNQILVTNYLQLDNLKQTFQVI-KFKYYLMDENGKIFNPDPCRNIILNPFNL 1051 Query: 684 N 686 N Sbjct: 1052 N 1052
>RPOC2_PANGI (Q68S16) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1387 Score = 195 bits (495), Expect = 1e-49 Identities = 122/243 (50%), Positives = 159/243 (65%), Gaps = 15/243 (6%) Frame = +3 Query: 3 FYLXENSKLTQRIYHTNSQFVRTCLVVNWEQEEK----EKAGASLVEVRANDLIRDFLRI 170 + L K + Y T+ Q VRTCLV+NW Q++K E+A S VE+R N LIRDFL+I Sbjct: 812 YILYGTGKPIRGFYDTSIQLVRTCLVLNWVQDKKSSSIEEARTSFVEIRINSLIRDFLKI 871 Query: 171 ELVKSTISYTRKRYDRTSGGPTPHNRLDRANSNSF-----YSKAKI-ESLSQHQEAIGTL 332 +L KS I YT KR D + G N DR N N F YSKA+I ESL+Q+Q I TL Sbjct: 872 DLAKSPILYTGKRKDPSGSGLISENGSDRTNINPFSSSFFYSKARIKESLNQNQGTIHTL 931 Query: 333 LNRNKEYQSLMILSASNCSRIGLFKNSKHPNAIKEWNPRIPILEI---FGPLGAIVASIS 503 LNRNKE QSL+ILS+SNC R+G F + K+ N IKE + P+++I GPLG + I+ Sbjct: 932 LNRNKECQSLIILSSSNCFRMGPFNDVKYHNVIKESIQKDPLIQIRNSLGPLGTAL-QIA 990 Query: 504 HFSSSYYLLTHNKILLKKYLFVDNLKQTFQVLQELKYSLIDENKRISNFD--SNIMLDPF 677 +F S +L+T+N+IL+ YL +DNLKQ+FQV LKY L+DEN +I N D NI+L+PF Sbjct: 991 NFYSFSHLITYNQILVTNYLQLDNLKQSFQV---LKYYLMDENGKIYNPDRCCNIILNPF 1047 Query: 678 LLN 686 LN Sbjct: 1048 NLN 1050
>RPOC2_LACSA (Q56P11) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1381 Score = 193 bits (491), Expect = 4e-49 Identities = 123/228 (53%), Positives = 151/228 (66%), Gaps = 12/228 (5%) Frame = +3 Query: 39 IYHTNSQFVRTCLVVNWEQEEK-EKAGASLVEVRANDLIRDFLRIELVKSTISYTRKRYD 215 I+ T+ Q VRT LV+NW+Q++K EKA AS VE+R N L+R FLRI+L KS ISYT KR D Sbjct: 825 IWDTSIQLVRTSLVLNWDQDKKIEKACASFVEIRTNGLLRYFLRIDLAKSPISYTGKRND 884 Query: 216 RTSGGPTPHNRLDRANSNSF-----YSKAKI-ESLSQHQEAIGTLLNRNKEYQSLMILSA 377 + G N DRAN N F YSK++I ESL+ +Q I TLLNRNKE QSL+ILS+ Sbjct: 885 LSGSGLISENGSDRANVNPFSSIYSYSKSRIKESLNPNQGTIHTLLNRNKESQSLIILSS 944 Query: 378 SNCSRIGLFKNSKHPNAIKE---WNPRIPILEIFGPLGAIVASISHFSSSYYLLTHNKIL 548 SNC RIG F + K PN IKE NP IPI GPLG I +F +L+THN+IL Sbjct: 945 SNCFRIGPFNDVKSPNVIKESIKKNPLIPIRNSLGPLGT-GFPIYNFDLFSHLITHNQIL 1003 Query: 549 LKKYLFVDNLKQTFQVLQELKYSLIDENKRISN--FDSNIMLDPFLLN 686 + YL +DN KQ FQ+ LKY L+DEN +I N SNI+L+PF LN Sbjct: 1004 VTNYLQLDNFKQIFQI---LKYYLLDENGQIYNPYSCSNIILNPFHLN 1048
>RPOC2_SPIOL (P11704) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1361 Score = 189 bits (481), Expect = 5e-48 Identities = 116/240 (48%), Positives = 152/240 (63%), Gaps = 12/240 (5%) Frame = +3 Query: 3 FYLXENSKLTQRIYHTNSQFVRTCLVVNWEQEEK----EKAGASLVEVRANDLIRDFLRI 170 + L N K+T+ I T+ Q VRTCLV+NW Q++K E+A S VEVR N +I+DFL++ Sbjct: 805 YILYGNGKVTRGISDTSIQLVRTCLVLNWNQDKKGSSIEEARGSFVEVRTNGMIQDFLKV 864 Query: 171 ELVKSTISYTRKRYDRTSGGPTPHNRLDRANSNSFYS-----KAKIE-SLSQHQEAIGTL 332 LVK ISY KR D +S D N N FYS K K++ S +Q+Q + TL Sbjct: 865 NLVKPAISYISKRNDPSS---EKKEGSDHTNMNPFYSIYIYPKTKLQKSFNQNQGTVRTL 921 Query: 333 LNRNKEYQSLMILSASNCSRIGLFKNSKHPNAIKEWNPRIPILEIFGPLGAIVASISHFS 512 L NKE Q +ILS+SNC RIG FK K+P + + +P IPI FGPLG + I++F Sbjct: 922 LGINKECQFFLILSSSNCFRIGPFKGVKYPKELIKKDPLIPIRNSFGPLGTAL-QIANFF 980 Query: 513 SSYYLLTHNKILLKKYLFVDNLKQTFQVLQELKYSLIDENKRISNFD--SNIMLDPFLLN 686 S YYL+THN+IL+ YL +DNLKQTFQ + +Y L+DEN RI N D SNI+ +PF LN Sbjct: 981 SFYYLITHNQILVTNYLQLDNLKQTFQPF-KFQYYLMDENGRIYNPDPCSNIIFNPFKLN 1039
>RPOC2_CUCSA (Q4VZP3) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1394 Score = 187 bits (476), Expect = 2e-47 Identities = 121/241 (50%), Positives = 153/241 (63%), Gaps = 13/241 (5%) Frame = +3 Query: 3 FYLXENSKLTQRIYHTNSQFVRTCLVVNWEQEEK----EKAGASLVEVRANDLIRDFLRI 170 + L N K + I T+ Q VRTCL++NW++++K E A AS VEV N L+R+FLRI Sbjct: 817 YILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRI 876 Query: 171 ELVKSTISYTRKRYDRTSGGPTPHNRLDRANSNSF---YSKAKI-ESLSQHQEAIGTLLN 338 +L KS +Y RKR D + G +N DR N N F YSK ++ +S SQ+Q I TLLN Sbjct: 877 DLGKSDTAYIRKRKDPSGSGLIFNNESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLLN 936 Query: 339 RNKEYQSLMILSASNCSRIGLFKNSKHPNAIKEWNPRIPILEI---FGPLGAIVASISHF 509 RNKE QSL+ILSASNC +I LF + K N IKE + + P++ I GPLGA I +F Sbjct: 937 RNKERQSLIILSASNCLQIDLFNDVKDYNVIKESSKKDPLISIRNSLGPLGA-APQIVNF 995 Query: 510 SSSYYLLTHNKILLKKYLFVDNLKQTFQVLQELKYSLIDENKRISNFDS--NIMLDPFLL 683 S YYL+THN I L KYL +DNLKQ FQV LKY L+DEN I N D NI+ + F L Sbjct: 996 YSFYYLITHNPISLTKYLQLDNLKQIFQV---LKYYLMDENGGILNSDPCINIVFNTFNL 1052 Query: 684 N 686 N Sbjct: 1053 N 1053
>RPOC2_LOTJA (Q9BBS7) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1332 Score = 187 bits (475), Expect = 3e-47 Identities = 122/244 (50%), Positives = 155/244 (63%), Gaps = 16/244 (6%) Frame = +3 Query: 3 FYLXENSKLTQRIYHTNSQFVRTCLVVNWEQEEK----EKAGASLVEVRANDLIRDFLRI 170 F L N K + I T+ Q VRTCLV+NW ++EK E+A AS VEV N LIR FLRI Sbjct: 787 FILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSSSIEEALASFVEVSTNGLIRYFLRI 846 Query: 171 ELVKSTISYTRKRYDRTSGGPTPHNRLDRANSNSFYSKAK---IESLSQHQEAIGTLLNR 341 +LVKS ISY RKR D +S G +N DR N N F+S K +SLSQ I LLNR Sbjct: 847 DLVKSHISYIRKRNDPSSSGLISYNESDRININPFFSIYKENIQQSLSQKHGTIRMLLNR 906 Query: 342 NKEYQSLMILSASNCSRIGLFKNSKHPNAIKE------WNPRIPILEIFGPLGAIVASIS 503 NKE +S +ILS+SNC ++G F N K+ N IKE N +IPI GPLG + I+ Sbjct: 907 NKENRSFIILSSSNCFQMGPFNNVKYHNGIKEEINQFKRNHKIPIKISLGPLG-VAPQIA 965 Query: 504 HFSSSYYLLTHNKI-LLKKYLFVDNLKQTFQVLQELKYSLIDENKRISNFD--SNIMLDP 674 +F S Y+L+THNKI +KK L ++ K+TFQV +KY L+DEN+RI D +NI+L+P Sbjct: 966 NFFSFYHLITHNKISSIKKNLQLNKFKETFQV---IKYYLMDENERIYKPDLYNNIILNP 1022 Query: 675 FLLN 686 F LN Sbjct: 1023 FHLN 1026
>RPOC2_OENHO (Q9MTM3) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1386 Score = 182 bits (461), Expect = 1e-45 Identities = 118/233 (50%), Positives = 148/233 (63%), Gaps = 10/233 (4%) Frame = +3 Query: 18 NSKLTQRIYHTNSQFVRTCLVVNWEQEEK----EKAGASLVEVRANDLIRDFLRIELVKS 185 N K + I T+ Q VRT ++NW+Q++K E A AS VEVRA LIRDFLRI+LVKS Sbjct: 818 NGKPIREISDTSIQLVRTWFILNWDQDKKSASAEAAHASFVEVRAKGLIRDFLRIDLVKS 877 Query: 186 TISYTRKRYDRTSGGPTPHNRLDRANSNSFYSKAKI-ESLSQHQEAIGTLLNRNKEYQSL 362 I RKR D + G N D N N FYSK K+ +S Q+ I TLLN+NKE SL Sbjct: 878 PILDPRKRNDPSGSGLISDNVSDHTNINPFYSKPKMKQSPRQNHGTIRTLLNQNKECPSL 937 Query: 363 MILSASNCSRIGLFKNSKHPNAIKEWNPRIPILEI---FGPLGAIVASISHFSSSYYLLT 533 MILSASN R+G F + K N IKE + I++I GPLG + + +F S YY +T Sbjct: 938 MILSASNWFRMGPFNDVKSQNVIKESIKKDAIIQIRNSIGPLGTAL-QVVNFDSFYYFIT 996 Query: 534 HNKILLKKYLFVDNLKQTFQVLQELKYSLIDENKRISNFD--SNIMLDPFLLN 686 HN++LL KYL V+NLKQTFQVLQ Y L+DE+ RI N D SNI+L+ F L+ Sbjct: 997 HNQVLLTKYLQVENLKQTFQVLQ---YYLMDESGRIYNPDPRSNIVLNSFNLS 1046
>RPOC2_PEA (P12227) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) (Fragment) Length = 1163 Score = 162 bits (411), Expect = 7e-40 Identities = 111/238 (46%), Positives = 145/238 (60%), Gaps = 10/238 (4%) Frame = +3 Query: 3 FYLXENSKLTQRIYHTNSQFVRTCLVVNWEQEEK----EKAGASLVEVRANDLIRDFLRI 170 + L N K + I T Q VRTCLV NW+ + E+A AS +EVR N LI FLRI Sbjct: 607 YILYGNGKSIRGISDTRIQLVRTCLVFNWDDGKNSSSIEEAPASFIEVRTNGLIEYFLRI 666 Query: 171 ELVKSTISYTRKRYDRTSGGPTPHNRLDRANS-NSFYSKAKI-ESLSQHQEAIGTLLNRN 344 +LVKS SY RKR + + G N+ DR N S +SK KI +SLSQ+ I LLNRN Sbjct: 667 DLVKSNTSYIRKRNEPSGFGLIGDNKSDRINPFFSIHSKGKIQQSLSQNHGTIRMLLNRN 726 Query: 345 KEYQSLMILSASNCSRIGLFKNSKHPNAIKEWNPRIPILEI--FGPLGAIVASISHFSSS 518 KE +S +ILS+SNC ++ F N K N IK + PI+ I GPLG I +++F S Sbjct: 727 KECRSWIILSSSNCFQMRPFNNEKSHNGIK----KDPIISINNNGPLG-IALQVANFYSL 781 Query: 519 YYLLTHNKILLKKYLFVDNLKQTFQVLQELKYSLIDENKRISNFD--SNIMLDPFLLN 686 Y+L+THN+I + K L +D L + FQV +KY L+DEN +I D SNI+L+PF LN Sbjct: 782 YHLITHNQISIIKNLQLDKLTEIFQV---IKYYLMDENDKICKPDLYSNIILNPFHLN 836
>RPOC2_SOYBN (Q8HVY3) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1386 Score = 162 bits (409), Expect = 1e-39 Identities = 110/244 (45%), Positives = 146/244 (59%), Gaps = 16/244 (6%) Frame = +3 Query: 3 FYLXENSKLTQRIYHTNSQFVRTCLVVNWEQEEK----EKAGASLVEVRANDLIRDFLRI 170 + L N K + I T+ Q VRTCLV+NW+Q++K E A AS VE+ L+R FLRI Sbjct: 813 YILSGNGKSIRGISDTSIQLVRTCLVLNWDQDKKFSSIENAHASFVEISIKGLVRYFLRI 872 Query: 171 ELVKSTISYTRKRYDRTSGGPTPHNRLDRANSNSFY---SKAKI-ESLSQHQEAIGTLLN 338 +LVKS ISY RKR + N DR N F+ S+ KI +SLS++ I LLN Sbjct: 873 DLVKSHISYIRKRNNPPGSRFILDNESDRTTINPFFSIDSREKIQQSLSKNHGTIRMLLN 932 Query: 339 RNKEYQSLMILSASNCSRIGLFKNSKHPNAIKEW------NPRIPILEIFGPLGAIVASI 500 RN++ +SL+ILS+SNC +I F + K+ N IKE + IPI GPLG I + Sbjct: 933 RNEKCRSLIILSSSNCFQIRSFNHGKYYNGIKEGINQIQRDAMIPIKNSLGPLG-IAPQV 991 Query: 501 SHFSSSYYLLTHNKILLKKYLFVDNLKQTFQVLQELKYSLIDENKRISNFD--SNIMLDP 674 +HF Y L+THN+I + K +D LK+TFQV Q Y +DEN+RI D SNI+L+P Sbjct: 992 AHF-DFYRLITHNQISIIKNGQLDKLKETFQVFQ---YYFLDENERIYKPDLCSNIILNP 1047 Query: 675 FLLN 686 F LN Sbjct: 1048 FYLN 1051
>RPOC2_SILLA (Q589B8) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1373 Score = 156 bits (394), Expect = 6e-38 Identities = 104/240 (43%), Positives = 148/240 (61%), Gaps = 12/240 (5%) Frame = +3 Query: 3 FYLXENSKLTQRIYHTNSQFVRTCLVVNWEQEEK----EKAGASLVEVRANDLIRDFLRI 170 + L N K+T+ IY T+ Q VRTCLV+NW Q++K E+A AS VEVR N +IR FL+I Sbjct: 807 YILYGNGKVTRGIYDTSIQLVRTCLVLNWNQDKKDSSIEEARASFVEVRTNGIIRYFLKI 866 Query: 171 ELVKSTISYTRKRYDRTSGGPTPHNRLDRANSNSF---YSKAKI-ESLSQHQEAIGTLLN 338 L+ +SY K R + + L+ N N F YSK K+ ++ + +Q + L+ Sbjct: 867 GLMNRALSYIGK---RNNPPLFSDDGLEYTNMNPFFSIYSKPKLQQAFNPNQGTVRMLVG 923 Query: 339 RNKEYQSLMILSASNCSRIGLF--KNSKHPNAIKEWNPRIPILEIFGPLGAIVASISHFS 512 +NKE QS +ILS+SNC R+G F K+P + + I I FGPLG ++ ++ F Sbjct: 924 KNKECQSFIILSSSNCFRMGPFTLNGVKYPKESIKKDRLILIKNSFGPLGTVLNFVNFF- 982 Query: 513 SSYYLLTHNKILLKKYLFVDNLKQTFQVLQELKYSLIDENKRISN--FDSNIMLDPFLLN 686 Y+L+THN+IL+ YL +DNLKQT QVL + +Y L+DEN I N F SNI+L+PF L+ Sbjct: 983 FFYHLITHNQILVNNYLQLDNLKQTCQVL-KYQYYLMDENGIIYNPDFCSNIILNPFNLH 1041
>RPOC2_ARATH (P56764) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1376 Score = 154 bits (389), Expect = 2e-37 Identities = 106/234 (45%), Positives = 135/234 (57%), Gaps = 6/234 (2%) Frame = +3 Query: 3 FYLXENSKLTQRIYHTNSQFVRTCLVVNWEQEEK-EKAGASLVEVRANDLIRDFLRIELV 179 + L N K T+ I T+ Q VRTCLV+NW++ E+ A VEV LI+DF+RI LV Sbjct: 813 YILYGNGKPTRGISDTSIQLVRTCLVLNWDKNSSLEEVRAFFVEVSTKGLIQDFIRIGLV 872 Query: 180 KSTISYTRKRYDRTSGGPTPHNRLDRANSNSFYSKAKIESLSQHQEAIGTLLNRNKEYQS 359 KS ISY RKR + G + ++ S S S +SL Q+ I LNRNKE QS Sbjct: 873 KSHISYIRKRNNSPDSGLISADHMNPFYSISPKSGILQQSLRQNHGTIRMFLNRNKESQS 932 Query: 360 LMILSASNCSRIGLFKNSKHPNAIKE---WNPRIPILEIFGPLGAIVASISHFSSSYYLL 530 L+ILS+SNC R+G F + KH N I + N I I GPLG IS+F S LL Sbjct: 933 LLILSSSNCFRMGPFNHVKHHNVINQSIKKNTLITIKNSSGPLGT-ATPISNFYSFLPLL 991 Query: 531 THNKILLKKYLFVDNLKQTFQVLQELKYSLIDENKRISNFD--SNIMLDPFLLN 686 T+N+I L KY +DNLK F Q++ LIDEN I N D SN++L+PF LN Sbjct: 992 TYNQISLIKYFQLDNLKYIF---QKINSYLIDENGIILNLDPYSNVVLNPFKLN 1042
>RPOC2_SINAL (Q9THV5) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1384 Score = 119 bits (298), Expect = 9e-27 Identities = 96/242 (39%), Positives = 127/242 (52%), Gaps = 14/242 (5%) Frame = +3 Query: 3 FYLXENSKLTQRIYHTNSQFVRTCLVVNWEQEEK----EKAGASLVEVRANDLIRDFLRI 170 + L N K T+ I T+ Q VRTCLV+NW+Q+ K E+ A VEV LIRDF+RI Sbjct: 818 YILYGNGKPTRGISDTSIQLVRTCLVLNWDQDNKNSSLEEVRAFFVEVNTKGLIRDFIRI 877 Query: 171 ELVKSTISYTRKRYDRTSGGPTPHNRLDRANSNSFYS---KAKI--ESLSQHQEAIGTLL 335 LVKS ISY RKR + +S + + N FYS KA I +SL Q+ I L Sbjct: 878 GLVKSHISYIRKRNNPSSEKKEGSDH----SMNPFYSISPKAGILHQSLRQNHGTIRMFL 933 Query: 336 NRNKEYQSLMILSASNCSRIGLFKNSKHPNAIKEWNPRIP---ILEIFGPLGAIVASISH 506 NRN+ L+ILS+SNC RIG F + K+ N I + + I P G + + Sbjct: 934 NRNRN-PILLILSSSNCFRIGPFNHVKYHNVINQSIKKKTSNYIKNCRAPYGTAIQILIF 992 Query: 507 FSSSYYLLTHNKILLKKYLFVDNLKQTFQVLQELKYSLIDENKRISNFD--SNIMLDPFL 680 ++ L N+I KYL + F V+ LIDEN RI N D SN++L+PF Sbjct: 993 IHFAFTKLI-NQISCIKYLHLQTSNVFFPVIHSY---LIDENGRIFNLDPYSNLVLNPFK 1048 Query: 681 LN 686 LN Sbjct: 1049 LN 1050
>RPOC2_PINKO (Q85X62) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1209 Score = 99.8 bits (247), Expect = 7e-21 Identities = 73/220 (33%), Positives = 113/220 (51%), Gaps = 5/220 (2%) Frame = +3 Query: 9 LXENSKLTQRIYHTNSQFVRTCLVVNWEQEE--KEKAGASLVEVRANDLIRDFLRIELVK 182 L E+ + Q + T+ VRTCL +WEQ + + +A SL+ VR N ++ + ++I L+K Sbjct: 661 LYEDGERIQVMSDTSIPLVRTCLGFDWEQIDSIESEAYVSLISVRTNKIVNNMVQISLMK 720 Query: 183 STISYTRKRYDRTSGGPTPHNRLDRANSNSFYSKAKIESLSQHQEAIGTLLNRNKEYQSL 362 + +R ++ S HN LD ++N F S + +S+HQ I +L N ++ S Sbjct: 721 YPPFFMGRRDNKASSNLMFHNNLD--HTNLFSSNGASQLISKHQGTICSLSNGEEDSGSF 778 Query: 363 MILSASNCSRIGLFKNSK---HPNAIKEWNPRIPILEIFGPLGAIVASISHFSSSYYLLT 533 M+LS S+C RI LF +SK N +P I+E G LG + + S F SS + +T Sbjct: 779 MVLSPSDCFRIVLFNDSKCYDTGNKSNRKDPMRKIIEFSGLLGHLHSITSRFPSSQF-IT 837 Query: 534 HNKILLKKYLFVDNLKQTFQVLQELKYSLIDENKRISNFD 653 K+L KK+ N +DEN RIS+FD Sbjct: 838 DKKVLSKKHSIFHNY-------------FMDENMRISHFD 864
>RPOC2_PINTH (P41606) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1224 Score = 99.8 bits (247), Expect = 7e-21 Identities = 74/218 (33%), Positives = 117/218 (53%), Gaps = 5/218 (2%) Frame = +3 Query: 15 ENSKLTQRIYHTNSQFVRTCLVVNWEQEE--KEKAGASLVEVRANDLIRDFLRIELVKST 188 E+ + Q + + VRTC+ +WEQ + + +A SL+ VR N ++ + ++I L+K Sbjct: 665 EDGERIQVMSDISIPLVRTCIGFDWEQIDSIESEAYVSLISVRTNKIVNNMVQISLMKYP 724 Query: 189 ISYTRKRYDRTSGGPTPHNRLDRANSNSFYSKAKIESLSQHQEAIGTLLNRNKEYQSLMI 368 + +R ++TS HN LD N S S + +S+HQ I +L N ++ S M+ Sbjct: 725 PFFMGRRDNKTSPNLMFHNNLDHTNLLS--SNGASQLISKHQGIICSLSNGEEDSGSFMV 782 Query: 369 LSASNCSRIGLFKNSKHPNAIKEWNPRIP---ILEIFGPLGAIVASISHFSSSYYLLTHN 539 LS S+ RI LF +SK + + N + P I+E G LG + + + F SS++ LT+ Sbjct: 783 LSPSDYFRIVLFNDSKCYDTGNQSNRKDPMRKIIEFSGLLGNLHSITNRFPSSHF-LTYK 841 Query: 540 KILLKKYLFVDNLKQTFQVLQELKYSLIDENKRISNFD 653 K+L KK+ N TFQV KY +DEN I +FD Sbjct: 842 KVLSKKHSIFHNSFNTFQV---PKYYFMDENMIIYHFD 876
>RPOC2_MARPO (P06274) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1386 Score = 72.4 bits (176), Expect = 1e-12 Identities = 64/246 (26%), Positives = 116/246 (47%), Gaps = 32/246 (13%) Frame = +3 Query: 3 FYLXENSKLTQRIYHTNSQFVRTCLVVNWEQEEKEK-AGASLVEVRANDLIRDFLRIELV 179 + L E+ + Q I N Q ++TCL+V+W+++ K A S ++++ + + FL+I L+ Sbjct: 792 YLLYEDDEQIQIINEKNIQLIQTCLLVHWKKKYFFKEANVSFLKIKTKNNFKTFLQISLI 851 Query: 180 KSTISYTRKRYDRTSGGPTPHNRLDRANSNSFYSKAKIESLSQHQEAIGTLLNRNKEYQS 359 + S K+ ++T N L + + F+S +K E ++ Q I + N+N QS Sbjct: 852 E--YSNLEKKKEKTIS----KNVLKKNYYDHFFSISKNELKNKKQGVIRIISNQNNGMQS 905 Query: 360 LMILSASNCSRIGLFKNSKHPNAIK-----------EWNPRIPIL--------------- 461 +ILS+S+ + FK +IK E+N IL Sbjct: 906 FIILSSSDLVKTFKFKKLTKNISIKTNTNTSTAKFFEFNKNFKILNKKKKLNLTKKNFSI 965 Query: 462 -----EIFGPLGAIVASISHFSSSYYLLTHNKILLKKYLFVDNLKQTFQVLQELKYSLID 626 + G LG + +++ SS+YL+ + K++ KY + + T Q K+ LID Sbjct: 966 GLLLFKKLGFLGNLHNIVTNSFSSFYLINYTKLISNKYSIITKFQHT---CQNPKWYLID 1022 Query: 627 ENKRIS 644 E+K+I+ Sbjct: 1023 ESKKIN 1028
>RPOC2_PHYPA (P60290) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1330 Score = 57.8 bits (138), Expect = 3e-08 Identities = 58/240 (24%), Positives = 108/240 (45%), Gaps = 24/240 (10%) Frame = +3 Query: 3 FYLXENSKLTQRIYHTNSQFVRTCLVVNWEQEE-KEKAGASLVEVRANDLIRDFLRIELV 179 + L E+S+ + T+ Q ++TCL++NWE + ++A S +++R N +I++F +I L+ Sbjct: 761 YILYEDSEEVEINPDTDIQLIQTCLILNWETKVFIKEAHISFIKIRINKIIKNFFQINLI 820 Query: 180 KSTISYTRKRYDRTSGGPTPHNRLDRANSNSFYSK--AKIESLSQHQEAIGTLLNRNKEY 353 ++ +K+ + N L + K KI LS+ I T N+N+E Sbjct: 821 ENINLMNKKKNNNII-----LNYLFKKKRYIINQKDCEKILLLSKTWGIIRTPSNKNQEK 875 Query: 354 QSLMILSASNCSRIGLFKNSKHPNAIKE-------WNPR--------------IPILEIF 470 +ILS N + LF +K I+ + P+ + L + Sbjct: 876 SFFLILSPFNLFQTILFDKTKQNLKIENNVEKLFTYEPKKIIKTFNIEKRKNFVEFLGLL 935 Query: 471 GPLGAIVASISHFSSSYYLLTHNKILLKKYLFVDNLKQTFQVLQELKYSLIDENKRISNF 650 G L I S FS + +K + + +DNLK+ ++ K+ ++ENK++ F Sbjct: 936 GYLQNITKSFQLFSCKKF---SDKSIPINFSIIDNLKKKIKI---SKWFFLNENKKVQKF 989
>RPOC2_ANTFO (Q85C71) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1445 Score = 57.0 bits (136), Expect = 5e-08 Identities = 65/285 (22%), Positives = 111/285 (38%), Gaps = 68/285 (23%) Frame = +3 Query: 3 FYLXENSKLTQRIYHTNSQFVRTCLVVNWEQEEK-EKAGASLVEVRANDLIRDFLRIELV 179 + L E+ + + T Q ++T LV++W+++ +K ASL E+ N L + FL+I L+ Sbjct: 810 YLLYEDGEEVEVTNKTGIQLIQTGLVLDWKEDSSIKKVYASLTEIETNGLSKKFLQISLI 869 Query: 180 KSTISYTRKRYDRTSGGPTPHNRLDRANSNSFYSKAKIESLSQHQEAIGTLLNRNKEYQS 359 + I K+ + + N ++ ++ + Y ++ I N N+E +S Sbjct: 870 EHPIFEIEKKKNNVNLKYLFTNEINYSSHSFNYENGLFNG---YRGIIRISSNENQEDKS 926 Query: 360 LMILSASNCSRIGLFKNSK----------------------------------------- 416 L ILS + +I L KNS+ Sbjct: 927 LPILSPFDFVQIFLSKNSEEYTPEMKDEGNFNLDTNSIFYAKSFVKKFNQNSITSSQNSS 986 Query: 417 ----------HPNAIKEWNPR----------------IPILEIFGPLGAIVASISHFSSS 518 H N +E+N R I +L G LG + S F S Sbjct: 987 GTFINKEFYNHNNINQEFNSRKIIRNFFLSIERNFMEILLLRKLGLLGNSHSLPSPFQFS 1046 Query: 519 YYLLTHNKILLKKYLFVDNLKQTFQVLQELKYSLIDENKRISNFD 653 + THN+ ++ +Y ++NL+ FQV K+ DENK+ D Sbjct: 1047 CWANTHNQPIINRYSILENLRDVFQV---PKWYFFDENKKTHKLD 1088
>RPOC2_PSINU (Q8WI26) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1408 Score = 45.4 bits (106), Expect = 2e-04 Identities = 39/146 (26%), Positives = 73/146 (50%), Gaps = 7/146 (4%) Frame = +3 Query: 3 FYLXENSKLTQRIYHTNSQFVRTCLVVNWEQEEKEKAG-ASLVEVRANDLIRDFLRIELV 179 + L E+ + Q + + Q V+TCL+++WE++ KA S++E+R N +I+ FL+I L+ Sbjct: 803 YMLYEDGEEIQIKNNMSIQLVQTCLLLDWEKKSPIKAAKTSILELRINKIIKTFLQISLL 862 Query: 180 KSTISYTR-KRYDRTSGGPTPHNRLDRANSNSFYSKAKIESLS-----QHQEAIGTLLNR 341 S Y + ++ R N SF + + ++L +HQ I ++ NR Sbjct: 863 NSFDFYVKGSKFKRFFN-----------NKKSFVADSIPKTLESQLSIKHQGTIRSVSNR 911 Query: 342 NKEYQSLMILSASNCSRIGLFKNSKH 419 S ++LS S+ + L N ++ Sbjct: 912 K---TSFLVLSPSDSFQNSLSTNFQY 934
>RPOC2_ADICA (Q85FM9) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1420 Score = 35.0 bits (79), Expect = 0.22 Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 11/99 (11%) Frame = +3 Query: 3 FYLXENSKLTQRIYHTNSQFVRTCLVVNW-----EQEEKEKAGASLVEVRANDLIRDFLR 167 F +N + + I +Q VR CL++ W E +++ SL+ V+ + L + FL+ Sbjct: 805 FICCKNGEKIEVINDVPTQLVRLCLIIEWQKYLHETLPRKRNYFSLISVKISYLFKTFLQ 864 Query: 168 IELVKSTISYTRKRYD---RTS---GGPTPHNRLDRANS 266 + + S + R D RTS G P+P +LD ANS Sbjct: 865 VNPMVSPPTQRGVRVDEIFRTSTPLGKPSP-PQLDLANS 902
>COX3_APILI (P34843) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide III) Length = 259 Score = 31.6 bits (70), Expect = 2.4 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 3/69 (4%) Frame = +3 Query: 420 PNAIKEWNP-RIPILEIFGPLGA-IVASISHFSSSYYLLTHNKILLKKYLFVDNLKQT-F 590 P IK +NP IP+L F + + ++SH YYL+ +N L K YL + L F Sbjct: 117 PKNIKFFNPMEIPLLNSFILVSSGFTVTLSH----YYLIINNLKLSKSYLLLTILLGIYF 172 Query: 591 QVLQELKYS 617 +LQ ++YS Sbjct: 173 TILQTIEYS 181
>SYFB_HELPY (P56145) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 764 Score = 31.6 bits (70), Expect = 2.4 Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 3/131 (2%) Frame = +3 Query: 93 QEEKEKAGASLVEVRANDLIRDFLRIELVKS-TISYTRKRYDRTSGGPTPHNRLDRANSN 269 Q +K+ + L+E D I L++ +K T+ R++ G P N D N Sbjct: 299 QVQKDLSECLLLEASYTDPISLSLKLHALKDKTLQKDNALIYRSARGSNP-NLSDGLNFL 357 Query: 270 SFYSKAKIESLSQHQEAIG--TLLNRNKEYQSLMILSASNCSRIGLFKNSKHPNAIKEWN 443 S + KA I Q + ++ TL + ++ ++ L+ G+ KN ++KE N Sbjct: 358 SAHLKATILESKQTEHSLKDRTLTFQLEDITEILGLAVEKEKIQGILKNLGFKVSVKEPN 417 Query: 444 PRIPILEIFGP 476 + ILE+ P Sbjct: 418 SKPQILEVIAP 428
>MURA_PROM9 (Q319I9) UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC| 2.5.1.7) (Enoylpyruvate transferase) (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT) Length = 456 Score = 30.8 bits (68), Expect = 4.1 Identities = 14/48 (29%), Positives = 31/48 (64%) Frame = +3 Query: 525 LLTHNKILLKKYLFVDNLKQTFQVLQELKYSLIDENKRISNFDSNIML 668 LLT+ KI+L+ ++ ++++ +L+ L +LID+N ++ +NI + Sbjct: 45 LLTNEKIILENIPYLTDIEKMGNILKNLGVNLIDKNDQLEIDPTNISI 92
>YMI4_YEAST (Q04521) Hypothetical protein YML084W precursor| Length = 102 Score = 29.6 bits (65), Expect = 9.1 Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 3/33 (9%) Frame = +3 Query: 498 ISHFSSSYYLLTHNKI---LLKKYLFVDNLKQT 587 I+ F SSYY LT N LLKKY + +LKQ+ Sbjct: 49 INSFRSSYYSLTINGSTISLLKKYFLLQDLKQS 81 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 90,766,295 Number of Sequences: 219361 Number of extensions: 1801425 Number of successful extensions: 4556 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 4331 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4452 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6882837918 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
