ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd23c17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MT2C_RABIT (P80290) Metallothionein-2C (MT-2C) (Metallothionein-... 30 2.7
2MT1G_HUMAN (P13640) Metallothionein-1G (MT-1G) (Metallothionein-... 29 4.5
3MT_ARIAR (P55946) Metallothionein (MT) 29 5.9
4MT4_DROME (Q8I9B4) Metallothionein-4 (MT-4) (Metallothionein D) 28 7.7
5MT2A_RABIT (P18055) Metallothionein-2A (MT-2A) (Metallothionein-... 28 7.7
6NACH_DROVI (Q9NJP2) Sodium channel protein Nach (Fragment) 28 7.7
7TCOF_HUMAN (Q13428) Treacle protein (Treacher Collins syndrome p... 28 7.7

>MT2C_RABIT (P80290) Metallothionein-2C (MT-2C) (Metallothionein-IIC) (MT-IIC)|
          Length = 62

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 169 PNCQAQATSVSSCSCHQSCMCKLWK 243
           PNC   AT+  SC+C  SC CK  K
Sbjct: 3   PNCSC-ATAGDSCTCANSCTCKACK 26



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>MT1G_HUMAN (P13640) Metallothionein-1G (MT-1G) (Metallothionein-IG) (MT-IG)|
           (Metallothionein-1K) (MT-1K)
          Length = 62

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +1

Query: 169 PNCQAQATSVSSCSCHQSCMCK 234
           PNC   A  VS C+C  SC CK
Sbjct: 3   PNCSCAAAGVS-CTCASSCKCK 23



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>MT_ARIAR (P55946) Metallothionein (MT)|
          Length = 66

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 175 CQAQATSVSSCSCHQSCMCK 234
           C  + T  +SC C+ SC CK
Sbjct: 47  CGKECTGAASCKCNSSCSCK 66



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>MT4_DROME (Q8I9B4) Metallothionein-4 (MT-4) (Metallothionein D)|
          Length = 44

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = +1

Query: 163 CLPNCQAQATSVS-SCSCHQSCMC 231
           C  NCQ  AT    +C+C Q C C
Sbjct: 6   CGTNCQCSATKCGDNCACSQQCQC 29



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>MT2A_RABIT (P18055) Metallothionein-2A (MT-2A) (Metallothionein-IIA) (MT-IIA)|
          Length = 62

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +1

Query: 169 PNCQAQATSVSSCSCHQSCMCKLWK 243
           PNC   A    SC+C  SC CK  K
Sbjct: 3   PNCSCAAAG-DSCTCANSCTCKACK 26



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>NACH_DROVI (Q9NJP2) Sodium channel protein Nach (Fragment)|
          Length = 384

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 136 HYSDPMFPTCLPNCQAQATSVSSCSCH 216
           ++SD ++P C  NC+A+   V  C CH
Sbjct: 183 YFSDYVYPNCELNCRAK-NMVKLCGCH 208



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>TCOF_HUMAN (Q13428) Treacle protein (Treacher Collins syndrome protein)|
          Length = 1411

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -3

Query: 184 ALGNLANMSGTWGRCSGWPQQAGRTLLTVRIQKQRTSSRSKEQ 56
           +LGN+     T     G PQ+AG   + V+ +K   +S S E+
Sbjct: 494 SLGNILQAKPTSSPAKGPPQKAGPVAVQVKAEKPMDNSESSEE 536


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,636,045
Number of Sequences: 219361
Number of extensions: 817841
Number of successful extensions: 2448
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2445
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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