Clone Information

BLAST Search Result

Clone Name	basd23c17
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|BC087548.1\| Xenopus laevis cDNA clone IMAGE:3397679, partial cds	46	0.096
2	gb\|L04278.1\|XELSTAGE Xenopus laevis mRNA sequence	46	0.096
3	gb\|AC129065.3\| Didelphis virginiana clone LB3-118L8, complete se...	44	0.38
4	gb\|DP000023.1\| Didelphis virginiana target 1 genomic scaffold	44	0.38
5	gb\|AY318871.1\| Canarypox virus strain ATCC VR-111, complete genome	42	1.5
6	ref\|XM_466887.1\| Oryza sativa (japonica cultivar-group), mRNA	40	5.9
7	gb\|AC158542.2\| Pan troglodytes BAC clone CH251-262O17 from chrom...	40	5.9
8	gb\|AC102361.13\| Mus musculus chromosome 18, clone RP23-37I2, com...	40	5.9
9	gb\|AC069292.12\| Homo sapiens BAC clone RP11-648L18 from 7, compl...	40	5.9
10	gb\|AC142300.1\| Pan troglodytes BAC clone RP43-127J18 from 7, com...	40	5.9
11	gb\|AC083893.33\| Mus musculus strain C57BL/6J clone rp23-21l18 ma...	40	5.9
12	emb\|AL606758.15\| Human DNA sequence from clone RP11-288I21 on ch...	40	5.9
13	emb\|BX510655.18\| Zebrafish DNA sequence from clone DKEY-94J16 in...	40	5.9
14	emb\|BX640496.10\| Mouse DNA sequence from clone RP23-379O23 on ch...	40	5.9
15	dbj\|BS000567.1\| Pan troglodytes chromosome Y clone:PTFY-001J22, ...	40	5.9
16	emb\|BX957226.10\| Zebrafish DNA sequence from clone CH211-110P13 ...	40	5.9
17	gb\|DP000054.1\| Pan troglodytes chromosome Y, partial sequence	40	5.9
18	gb\|DP000055.1\| Pan troglodytes chromosome Y chry_random_1 genomi...	40	5.9
19	gb\|DP000056.1\| Pan troglodytes chromosome Y chry_random_3 genomi...	40	5.9
20	gb\|AC164571.3\| Pan troglodytes BAC clone CH251-967O8 from chromo...	40	5.9
21	gb\|AC008416.8\| Homo sapiens chromosome 5 clone CTC-284H5, comple...	40	5.9
22	dbj\|AK032191.1\| Mus musculus adult male olfactory brain cDNA, RI...	40	5.9
23	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.9
24	gb\|AC175060.2\| Pan troglodytes BAC clone CH251-724O9 from chromo...	40	5.9
25	gb\|AC146266.4\| Pan troglodytes BAC clone RP43-30L11 from chromos...	40	5.9
26	gb\|AC011510.7\|AC011510 Homo sapiens chromosome 19 clone CTD-2195...	40	5.9
27	gb\|AC022173.7\|AC022173 Homo sapiens chromosome 7 clone RP11-29B3...	40	5.9
28	gb\|AC163766.3\| Pan troglodytes BAC clone CH251-115P4 from chromo...	40	5.9
29	gb\|AC163726.3\| Pan troglodytes BAC clone CH251-653B19 from chrom...	40	5.9
30	dbj\|AP006452.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.9
31	dbj\|AK105924.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	5.9
32	dbj\|AK072947.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	5.9
33	gb\|AC163728.4\| Pan troglodytes BAC clone CH251-589C1 from chromo...	40	5.9
34	gb\|AC163716.3\| Pan troglodytes BAC clone CH251-828J24 from chrom...	40	5.9
35	gb\|AC163727.3\| Pan troglodytes BAC clone CH251-1132L6 from chrom...	40	5.9
36	emb\|AL592188.60\| Human DNA sequence from clone RP11-337M7 on chr...	40	5.9
37	emb\|AL121992.24\|HSDJ680D5 Human DNA sequence from clone RP4-680D...	40	5.9
38	gb\|AC005325.1\|AC005325 Homo sapiens chromosome 17, clone hRPK.60...	40	5.9
39	ref\|NM_174196.1\| Bos taurus thrombospondin (THBS), mRNA	40	5.9
40	dbj\|AB005287.2\| Bos taurus mRNA for thrombospondin 1, complete cds	40	5.9

>gb|BC087548.1| Xenopus laevis cDNA clone IMAGE:3397679, partial cds
          Length = 4199

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 135 ccactacagcgaccccatgttcc 157
           |||||||||||||||||||||||
Sbjct: 851 ccactacagcgaccccatgttcc 873

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>gb|L04278.1|XELSTAGE Xenopus laevis mRNA sequence
          Length = 3522

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 135  ccactacagcgaccccatgttcc 157
            |||||||||||||||||||||||
Sbjct: 2010 ccactacagcgaccccatgttcc 2032

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>gb|AC129065.3| Didelphis virginiana clone LB3-118L8, complete sequence
          Length = 166731

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 54    ttttgttcttttgaacgagaac 75
             ||||||||||||||||||||||
Sbjct: 29024 ttttgttcttttgaacgagaac 29045

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>gb|DP000023.1| Didelphis virginiana target 1 genomic scaffold
          Length = 1751794

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 54      ttttgttcttttgaacgagaac 75
               ||||||||||||||||||||||
Sbjct: 1614087 ttttgttcttttgaacgagaac 1614108

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>gb|AY318871.1| Canarypox virus strain ATCC VR-111, complete genome
          Length = 359853

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 349   acattttacatgatatagctt 369
             |||||||||||||||||||||
Sbjct: 38519 acattttacatgatatagctt 38499

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>ref|XM_466887.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1293

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 231 caagctttggaagaatgctt 250
           ||||||||||||||||||||
Sbjct: 461 caagctttggaagaatgctt 442

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>gb|AC158542.2| Pan troglodytes BAC clone CH251-262O17 from chromosome y, complete
              sequence
          Length = 174274

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 356    acatgatatagcttcttgct 375
              ||||||||||||||||||||
Sbjct: 165767 acatgatatagcttcttgct 165748

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>gb|AC102361.13| Mus musculus chromosome 18, clone RP23-37I2, complete sequence
          Length = 213628

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 199    tcctcctgcagctgtcacca 218
              ||||||||||||||||||||
Sbjct: 140278 tcctcctgcagctgtcacca 140259

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>gb|AC069292.12| Homo sapiens BAC clone RP11-648L18 from 7, complete sequence
          Length = 159624

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 80     cctctgtttctgaattctga 99
              ||||||||||||||||||||
Sbjct: 138480 cctctgtttctgaattctga 138461

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>gb|AC142300.1| Pan troglodytes BAC clone RP43-127J18 from 7, complete sequence
          Length = 142598

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 80    cctctgtttctgaattctga 99
             ||||||||||||||||||||
Sbjct: 41370 cctctgtttctgaattctga 41351

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>gb|AC083893.33| Mus musculus strain C57BL/6J clone rp23-21l18 map 4, complete sequence
          Length = 244349

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 80    cctctgtttctgaattctga 99
             ||||||||||||||||||||
Sbjct: 57981 cctctgtttctgaattctga 57962

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>emb|AL606758.15| Human DNA sequence from clone RP11-288I21 on chromosome 1 Contains
            part of the gene for a novel RUN and PH domain-containing
            protein (KIAA0842), complete sequence
          Length = 20541

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 362  tatagcttcttgcttgtttt 381
            ||||||||||||||||||||
Sbjct: 1879 tatagcttcttgcttgtttt 1860

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>emb|BX510655.18| Zebrafish DNA sequence from clone DKEY-94J16 in linkage group 5, complete
              sequence
          Length = 205761

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 350    cattttacatgatatagctt 369
              ||||||||||||||||||||
Sbjct: 129202 cattttacatgatatagctt 129183

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>emb|BX640496.10| Mouse DNA sequence from clone RP23-379O23 on chromosome 4, complete
             sequence
          Length = 172320

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 80    cctctgtttctgaattctga 99
             ||||||||||||||||||||
Sbjct: 21570 cctctgtttctgaattctga 21589

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>dbj|BS000567.1| Pan troglodytes chromosome Y clone:PTFY-001J22, complete sequences
          Length = 31289

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 356 acatgatatagcttcttgct 375
           ||||||||||||||||||||
Sbjct: 317 acatgatatagcttcttgct 336

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>emb|BX957226.10| Zebrafish DNA sequence from clone CH211-110P13 in linkage group 5,
              complete sequence
          Length = 149414

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 350    cattttacatgatatagctt 369
              ||||||||||||||||||||
Sbjct: 111815 cattttacatgatatagctt 111796

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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 356      acatgatatagcttcttgct 375
                ||||||||||||||||||||
Sbjct: 10189140 acatgatatagcttcttgct 10189121

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>gb|DP000055.1| Pan troglodytes chromosome Y chry_random_1 genomic scaffold
          Length = 276070

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 356    acatgatatagcttcttgct 375
              ||||||||||||||||||||
Sbjct: 103209 acatgatatagcttcttgct 103190

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>gb|DP000056.1| Pan troglodytes chromosome Y chry_random_3 genomic scaffold
          Length = 331329

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 356    acatgatatagcttcttgct 375
              ||||||||||||||||||||
Sbjct: 166513 acatgatatagcttcttgct 166494

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>gb|AC164571.3| Pan troglodytes BAC clone CH251-967O8 from chromosome y, complete
              sequence
          Length = 225200

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 356    acatgatatagcttcttgct 375
              ||||||||||||||||||||
Sbjct: 182255 acatgatatagcttcttgct 182236

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>gb|AC008416.8| Homo sapiens chromosome 5 clone CTC-284H5, complete sequence
          Length = 98597

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 184   caagccaccagcgtctcctc 203
             ||||||||||||||||||||
Sbjct: 46566 caagccaccagcgtctcctc 46547

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>dbj|AK032191.1| Mus musculus adult male olfactory brain cDNA, RIKEN full-length
            enriched library, clone:6430409O06 product:hypothetical
            protein, full insert sequence
          Length = 4023

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 199  tcctcctgcagctgtcacca 218
            ||||||||||||||||||||
Sbjct: 2842 tcctcctgcagctgtcacca 2823

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 231      caagctttggaagaatgctt 250
                ||||||||||||||||||||
Sbjct: 25272253 caagctttggaagaatgctt 25272272

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>gb|AC175060.2| Pan troglodytes BAC clone CH251-724O9 from chromosome y, complete
             sequence
          Length = 196548

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 356   acatgatatagcttcttgct 375
             ||||||||||||||||||||
Sbjct: 23670 acatgatatagcttcttgct 23651

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>gb|AC146266.4| Pan troglodytes BAC clone RP43-30L11 from chromosome 7, complete
             sequence
          Length = 187603

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 49    actctttttgttcttttgaa 68
             ||||||||||||||||||||
Sbjct: 17692 actctttttgttcttttgaa 17673

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>gb|AC011510.7|AC011510 Homo sapiens chromosome 19 clone CTD-2195B23, complete sequence
          Length = 129402

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 40    gccccagctactctttttgttcttttga 67
             |||||||||||||||||| || ||||||
Sbjct: 98525 gccccagctactctttttttttttttga 98552

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>gb|AC022173.7|AC022173 Homo sapiens chromosome 7 clone RP11-29B3, complete sequence
          Length = 155136

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 49     actctttttgttcttttgaa 68
              ||||||||||||||||||||
Sbjct: 103222 actctttttgttcttttgaa 103241

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>gb|AC163766.3| Pan troglodytes BAC clone CH251-115P4 from chromosome y, complete
             sequence
          Length = 185225

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 356   acatgatatagcttcttgct 375
             ||||||||||||||||||||
Sbjct: 42012 acatgatatagcttcttgct 42031

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>gb|AC163726.3| Pan troglodytes BAC clone CH251-653B19 from chromosome y, complete
             sequence
          Length = 207364

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 356   acatgatatagcttcttgct 375
             ||||||||||||||||||||
Sbjct: 42562 acatgatatagcttcttgct 42543

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>dbj|AP006452.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:B1250G12
          Length = 144590

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 231   caagctttggaagaatgctt 250
             ||||||||||||||||||||
Sbjct: 39404 caagctttggaagaatgctt 39423

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>dbj|AK105924.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-A07, full
           insert sequence
          Length = 1293

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 231 caagctttggaagaatgctt 250
           ||||||||||||||||||||
Sbjct: 461 caagctttggaagaatgctt 442

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>dbj|AK072947.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023145J08, full
            insert sequence
          Length = 2485

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 231  caagctttggaagaatgctt 250
            ||||||||||||||||||||
Sbjct: 1033 caagctttggaagaatgctt 1014

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>gb|AC163728.4| Pan troglodytes BAC clone CH251-589C1 from chromosome y, complete
             sequence
          Length = 206451

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 356   acatgatatagcttcttgct 375
             ||||||||||||||||||||
Sbjct: 38595 acatgatatagcttcttgct 38576

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>gb|AC163716.3| Pan troglodytes BAC clone CH251-828J24 from chromosome y, complete
              sequence
          Length = 165274

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 356    acatgatatagcttcttgct 375
              ||||||||||||||||||||
Sbjct: 127977 acatgatatagcttcttgct 127996

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>gb|AC163727.3| Pan troglodytes BAC clone CH251-1132L6 from chromosome y, complete
              sequence
          Length = 191546

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 356    acatgatatagcttcttgct 375
              ||||||||||||||||||||
Sbjct: 103198 acatgatatagcttcttgct 103179

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>emb|AL592188.60| Human DNA sequence from clone RP11-337M7 on chromosome 22, complete
             sequence
          Length = 161802

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 356   acatgatatagcttcttgct 375
             ||||||||||||||||||||
Sbjct: 57447 acatgatatagcttcttgct 57466

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>emb|AL121992.24|HSDJ680D5 Human DNA sequence from clone RP4-680D5 on chromosome 1p36.13-36.31
              Contains the 3' end of the gene for a novel DnaJ
              domain-containing protein (KIAA0962, FLJ13743, FLJ12468),
              the AGMAT gene for agmatine ureohydrolase (agmatinase), a
              novel gene (FLJ34180), a novel pseudogene similar to Mus
              musculus ethanol induced 6 (Etohi6), a CD24 antigen (small
              cell lung carcinoma cluster 4 antigen) (CD24) pseudogene,
              the gene for DNA-damage inducible protein 2 (DDI2), the
              RSC1A1 gene for regulatory solute carrier protein family 1
              member 1 and the 5' end of the gene for a novel RUN and PH
              domain-containing protein (KIAA0842), complete sequence
          Length = 170399

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 362    tatagcttcttgcttgtttt 381
              ||||||||||||||||||||
Sbjct: 170278 tatagcttcttgcttgtttt 170259

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>gb|AC005325.1|AC005325 Homo sapiens chromosome 17, clone hRPK.60_A_24, complete sequence
          Length = 165228

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 41    ccccagctactctttttgttcttttgaa 68
             |||||||| || ||||||||||||||||
Sbjct: 38098 ccccagctgctttttttgttcttttgaa 38125

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>ref|NM_174196.1| Bos taurus thrombospondin (THBS), mRNA
          Length = 5269

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 135  ccactacagcgaccccatgt 154
            ||||||||||||||||||||
Sbjct: 2148 ccactacagcgaccccatgt 2167

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>dbj|AB005287.2| Bos taurus mRNA for thrombospondin 1, complete cds
          Length = 5269

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 135  ccactacagcgaccccatgt 154
            ||||||||||||||||||||
Sbjct: 2148 ccactacagcgaccccatgt 2167


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,977,681
Number of Sequences: 3902068
Number of extensions: 3977681
Number of successful extensions: 69827
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69715
Number of HSP's gapped (non-prelim): 112
length of query: 441
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 419
effective length of database: 17,147,199,772
effective search space: 7184676704468
effective search space used: 7184676704468
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result