ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd23c15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SLAF6_MOUSE (Q9ET39) SLAM family member 6 precursor (Lymphocyte ... 31 1.5
2CVRA_VIBPA (Q87KV8) Cell volume regulation protein A homolog 29 7.6
3R13L4_ARATH (Q38834) Putative disease resistance RPP13-like prot... 29 7.6

>SLAF6_MOUSE (Q9ET39) SLAM family member 6 precursor (Lymphocyte antigen 108)|
          Length = 351

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
 Frame = -3

Query: 283 VISFSCGVLRYYEHSCGLVNNKRTHIL--GEDHIRMVCGIATQAKQLA-KWRENGNSQIC 113
           VI+F   +LR +E    L     T +L  G   I + C +  Q++ ++ +W+  GN  + 
Sbjct: 132 VITFKY-ILRVFERLGNLETTNYTLLLENGTCQIHLACVLKNQSQTVSVEWQATGNISLG 190

Query: 112 MSCVSPFPDPNTHSSSMRLCSMLNAMS 32
              V+ F DP        +C   NA+S
Sbjct: 191 GPNVTIFWDPRNSGDQTYVCRAKNAVS 217



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>CVRA_VIBPA (Q87KV8) Cell volume regulation protein A homolog|
          Length = 581

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 183 WCVGSPLRPSSWPNGAR 133
           WC+G PLR  S P G R
Sbjct: 427 WCIGEPLRSLSMPEGTR 443



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>R13L4_ARATH (Q38834) Putative disease resistance RPP13-like protein 4|
          Length = 852

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 14/65 (21%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
 Frame = -1

Query: 363 KITVLSLVQICTRASLKLRHLFWGRME*Y--LFRVVFYATTNIRVDW*TI-NGLTFLEKI 193
           K+ +L  + IC+   +K++  FWG    +  +  ++  + +++ +DW  +   + +L  +
Sbjct: 762 KLPMLRYMSICSGNLVKMQEPFWGNENTHWRIEGLMLSSLSDLDMDWEVLQQSMPYLRTV 821

Query: 192 TFVWC 178
           T  WC
Sbjct: 822 TANWC 826


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,139,182
Number of Sequences: 219361
Number of extensions: 1469081
Number of successful extensions: 4213
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4212
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3362826254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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