ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd23c14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 145 8e-32
2dbj|AP005395.3| Oryza sativa (japonica cultivar-group) genomic D... 145 8e-32
3dbj|AP003766.3| Oryza sativa (japonica cultivar-group) genomic D... 145 8e-32
4dbj|AK100322.1| Oryza sativa (japonica cultivar-group) cDNA clon... 145 8e-32
5dbj|AB071299.1| Oryza sativa OsARF10 mRNA for auxin response fac... 137 2e-29
6emb|AL390789.13| Human DNA sequence from clone RP11-572N15 on ch... 44 0.20
7emb|AL160286.16| Human DNA sequence from clone RP11-545A16 on ch... 42 0.81
8gb|AC096531.2| Homo sapiens chromosome 1 clone RP11-472F19, comp... 42 0.81
9gb|AC026113.25| Homo sapiens 12 BAC RP11-756G20 (Roswell Park Ca... 42 0.81
10gb|AC139211.13| Mus musculus chromosome 6, clone RP23-302O24, co... 40 3.2
11ref|XM_385834.1| Gibberella zeae PH-1 chromosome 3 hypothetical ... 40 3.2
12gb|AC018688.9| Homo sapiens BAC clone RP11-462H3 from UL, comple... 40 3.2
13emb|BX883051.1| Rattus norvegicus chromosome 20, major histocomp... 40 3.2
14gb|AC113581.3| Tetraodon nigroviridis clone GSTNA-45F12, complet... 40 3.2
15gb|AC113580.3| Tetraodon nigroviridis clone GSTNA-28E1, complete... 40 3.2
16gb|AC079766.7| Homo sapiens BAC clone RP11-188P17 from 4, comple... 40 3.2
17gb|AC067890.7| Homo sapiens chromosome 8, clone CTD-2005E13, com... 40 3.2
18dbj|AB168499.1| Macaca fascicularis testis cDNA clone: QtsA-1258... 40 3.2
19gb|AC024323.4|AC024323 Homo sapiens, clone RP11-28O13, complete ... 40 3.2
20gb|AY613075.1| Ourisia coccinea var. elegans voucher Meudt & Lop... 40 3.2
21gb|AY613070.1| Ourisia alpina voucher Meudt et al. 040, TEX exte... 40 3.2
22gb|AC092843.4| Homo sapiens BAC clone RP11-419O4 from 2, complet... 40 3.2
23dbj|AP005627.1| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 3.2 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  145 bits (73), Expect = 8e-32
 Identities = 189/228 (82%)
 Strand = Plus / Plus

                                                                            
Query: 1        ccttaacaaactgcagtcgagtctgtcaccgnacgggcttcaccaggtcgatcacggcgg 60
                |||||||||||||||||||||||| || ||  |||| ||||||||| | |||||||||  
Sbjct: 28205041 ccttaacaaactgcagtcgagtctatcgccccacggccttcaccagcttgatcacggcat 28205100

                                                                            
Query: 61       gcaacagaggatcgccgctgggcttatcattggtcaccagtctgcgcaagacgacatctc 120
                ||| | ||||||||||||||| || || || ||||| | | |||| |  || || |||||
Sbjct: 28205101 gcagccgaggatcgccgctggtctaattatcggtcatccggctgctcgggatgatatctc 28205160

                                                                            
Query: 121      gtgcatgctgaccattggcaatcaccagaacaacaagaagtcagatgtcaagaaggcttc 180
                 ||| || |||||||||| |  | ||||||||||||||| ||||||| |||||||||  |
Sbjct: 28205161 atgcttgttgaccattggtagcccccagaacaacaagaaatcagatggcaagaaggcgcc 28205220

                                                                
Query: 181      accccagctgatgctctttggaaagcccatactcactgagcagcagat 228
                | ||||||||||||| || ||||| ||||||||||| |||||||||||
Sbjct: 28205221 agcccagctgatgcttttcggaaaacccatactcacagagcagcagat 28205268
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>dbj|AP005395.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0623A10
          Length = 156517

 Score =  145 bits (73), Expect = 8e-32
 Identities = 189/228 (82%)
 Strand = Plus / Plus

                                                                        
Query: 1    ccttaacaaactgcagtcgagtctgtcaccgnacgggcttcaccaggtcgatcacggcgg 60
            |||||||||||||||||||||||| || ||  |||| ||||||||| | |||||||||  
Sbjct: 3070 ccttaacaaactgcagtcgagtctatcgccccacggccttcaccagcttgatcacggcat 3129

                                                                        
Query: 61   gcaacagaggatcgccgctgggcttatcattggtcaccagtctgcgcaagacgacatctc 120
            ||| | ||||||||||||||| || || || ||||| | | |||| |  || || |||||
Sbjct: 3130 gcagccgaggatcgccgctggtctaattatcggtcatccggctgctcgggatgatatctc 3189

                                                                        
Query: 121  gtgcatgctgaccattggcaatcaccagaacaacaagaagtcagatgtcaagaaggcttc 180
             ||| || |||||||||| |  | ||||||||||||||| ||||||| |||||||||  |
Sbjct: 3190 atgcttgttgaccattggtagcccccagaacaacaagaaatcagatggcaagaaggcgcc 3249

                                                            
Query: 181  accccagctgatgctctttggaaagcccatactcactgagcagcagat 228
            | ||||||||||||| || ||||| ||||||||||| |||||||||||
Sbjct: 3250 agcccagctgatgcttttcggaaaacccatactcacagagcagcagat 3297
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>dbj|AP003766.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0009H10
          Length = 175754

 Score =  145 bits (73), Expect = 8e-32
 Identities = 189/228 (82%)
 Strand = Plus / Plus

                                                                          
Query: 1      ccttaacaaactgcagtcgagtctgtcaccgnacgggcttcaccaggtcgatcacggcgg 60
              |||||||||||||||||||||||| || ||  |||| ||||||||| | |||||||||  
Sbjct: 135947 ccttaacaaactgcagtcgagtctatcgccccacggccttcaccagcttgatcacggcat 136006

                                                                          
Query: 61     gcaacagaggatcgccgctgggcttatcattggtcaccagtctgcgcaagacgacatctc 120
              ||| | ||||||||||||||| || || || ||||| | | |||| |  || || |||||
Sbjct: 136007 gcagccgaggatcgccgctggtctaattatcggtcatccggctgctcgggatgatatctc 136066

                                                                          
Query: 121    gtgcatgctgaccattggcaatcaccagaacaacaagaagtcagatgtcaagaaggcttc 180
               ||| || |||||||||| |  | ||||||||||||||| ||||||| |||||||||  |
Sbjct: 136067 atgcttgttgaccattggtagcccccagaacaacaagaaatcagatggcaagaaggcgcc 136126

                                                              
Query: 181    accccagctgatgctctttggaaagcccatactcactgagcagcagat 228
              | ||||||||||||| || ||||| ||||||||||| |||||||||||
Sbjct: 136127 agcccagctgatgcttttcggaaaacccatactcacagagcagcagat 136174
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>dbj|AK100322.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079H12, full
            insert sequence
          Length = 3026

 Score =  145 bits (73), Expect = 8e-32
 Identities = 189/228 (82%)
 Strand = Plus / Plus

                                                                        
Query: 1    ccttaacaaactgcagtcgagtctgtcaccgnacgggcttcaccaggtcgatcacggcgg 60
            |||||||||||||||||||||||| || ||  |||| ||||||||| | |||||||||  
Sbjct: 2051 ccttaacaaactgcagtcgagtctatcgccccacggccttcaccagcttgatcacggcat 2110

                                                                        
Query: 61   gcaacagaggatcgccgctgggcttatcattggtcaccagtctgcgcaagacgacatctc 120
            ||| | ||||||||||||||| || || || ||||| | | |||| |  || || |||||
Sbjct: 2111 gcagccgaggatcgccgctggtctaattatcggtcatccggctgctcgggatgatatctc 2170

                                                                        
Query: 121  gtgcatgctgaccattggcaatcaccagaacaacaagaagtcagatgtcaagaaggcttc 180
             ||| || |||||||||| |  | ||||||||||||||| ||||||| |||||||||  |
Sbjct: 2171 atgcttgttgaccattggtagcccccagaacaacaagaaatcagatggcaagaaggcgcc 2230

                                                            
Query: 181  accccagctgatgctctttggaaagcccatactcactgagcagcagat 228
            | ||||||||||||| || ||||| ||||||||||| |||||||||||
Sbjct: 2231 agcccagctgatgcttttcggaaaacccatactcacagagcagcagat 2278
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>dbj|AB071299.1| Oryza sativa OsARF10 mRNA for auxin response factor 10, partial cds
          Length = 2100

 Score =  137 bits (69), Expect = 2e-29
 Identities = 188/228 (82%)
 Strand = Plus / Plus

                                                                        
Query: 1    ccttaacaaactgcagtcgagtctgtcaccgnacgggcttcaccaggtcgatcacggcgg 60
            |||||||||||||||||||||||| || ||  ||||  |||||||| | |||||||||  
Sbjct: 1422 ccttaacaaactgcagtcgagtctatcgccccacggctttcaccagcttgatcacggcat 1481

                                                                        
Query: 61   gcaacagaggatcgccgctgggcttatcattggtcaccagtctgcgcaagacgacatctc 120
            ||| | ||||||||||||||| || || || ||||| | | |||| |  || || |||||
Sbjct: 1482 gcagccgaggatcgccgctggtctaattatcggtcatccggctgctcgggatgatatctc 1541

                                                                        
Query: 121  gtgcatgctgaccattggcaatcaccagaacaacaagaagtcagatgtcaagaaggcttc 180
             ||| || |||||||||| |  | ||||||||||||||| ||||||| |||||||||  |
Sbjct: 1542 atgcttgttgaccattggtagcccccagaacaacaagaaatcagatggcaagaaggcgcc 1601

                                                            
Query: 181  accccagctgatgctctttggaaagcccatactcactgagcagcagat 228
            | ||||||||||||| || ||||| ||||||||||| |||||||||||
Sbjct: 1602 agcccagctgatgcttttcggaaaacccatactcacagagcagcagat 1649
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>emb|AL390789.13| Human DNA sequence from clone RP11-572N15 on chromosome 6, complete
             sequence
          Length = 147434

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 185   cagctgatgctctttggaaagc 206
             ||||||||||||||||||||||
Sbjct: 52701 cagctgatgctctttggaaagc 52722
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>emb|AL160286.16| Human DNA sequence from clone RP11-545A16 on chromosome 1q25.1-31.1
             Contains the 3' end of a novel gene, a novel gene, the
             NPHS2 gene for idiopathic steroid-resistant nephrosis 2
             protein (podocin), a centaurin gamma 2 (CENTG2) pseudogene
             and the 5' end of a novel gene, complete sequence
          Length = 155416

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 185   cagctgatgctctttggaaag 205
             |||||||||||||||||||||
Sbjct: 48316 cagctgatgctctttggaaag 48296
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>gb|AC096531.2| Homo sapiens chromosome 1 clone RP11-472F19, complete sequence
          Length = 172281

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 185   cagctgatgctctttggaaag 205
             |||||||||||||||||||||
Sbjct: 47430 cagctgatgctctttggaaag 47450
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>gb|AC026113.25| Homo sapiens 12 BAC RP11-756G20 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 94556

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 185   cagctgatgctctttggaaag 205
             |||||||||||||||||||||
Sbjct: 45245 cagctgatgctctttggaaag 45225
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>gb|AC139211.13| Mus musculus chromosome 6, clone RP23-302O24, complete sequence
          Length = 154129

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 168   tcaagaaggcttcaccccag 187
             ||||||||||||||||||||
Sbjct: 70584 tcaagaaggcttcaccccag 70565



 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 168   tcaagaaggcttcaccccag 187
             ||||||||||||||||||||
Sbjct: 68917 tcaagaaggcttcaccccag 68898
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>ref|XM_385834.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG05658.1)
           partial mRNA
          Length = 1509

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 175 ggcttcaccccagctgatgc 194
           ||||||||||||||||||||
Sbjct: 666 ggcttcaccccagctgatgc 647
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>gb|AC018688.9| Homo sapiens BAC clone RP11-462H3 from UL, complete sequence
          Length = 170204

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 83    cttatcattggtcaccagtc 102
             ||||||||||||||||||||
Sbjct: 88492 cttatcattggtcaccagtc 88511
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>emb|BX883051.1| Rattus norvegicus chromosome 20, major histocompatibility complex,
              assembled from 40 BACs, strain Brown Norway (BN/ssNHsd),
              RT1n haplotype; segment 10/11
          Length = 348946

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 149    aacaacaagaagtcagatgt 168
              ||||||||||||||||||||
Sbjct: 347030 aacaacaagaagtcagatgt 347049
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>gb|AC113581.3| Tetraodon nigroviridis clone GSTNA-45F12, complete sequence
          Length = 115385

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 152   aacaagaagtcagatgtcaa 171
             ||||||||||||||||||||
Sbjct: 23034 aacaagaagtcagatgtcaa 23053
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>gb|AC113580.3| Tetraodon nigroviridis clone GSTNA-28E1, complete sequence
          Length = 127223

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 152    aacaagaagtcagatgtcaa 171
              ||||||||||||||||||||
Sbjct: 114456 aacaagaagtcagatgtcaa 114475
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>gb|AC079766.7| Homo sapiens BAC clone RP11-188P17 from 4, complete sequence
          Length = 129874

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 185    cagctgatgctctttggaaagccc 208
              ||||||||||||| ||||||||||
Sbjct: 127386 cagctgatgctctctggaaagccc 127409
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>gb|AC067890.7| Homo sapiens chromosome 8, clone CTD-2005E13, complete sequence
          Length = 120816

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 193   gctctttggaaagcccatac 212
             ||||||||||||||||||||
Sbjct: 54017 gctctttggaaagcccatac 53998
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>dbj|AB168499.1| Macaca fascicularis testis cDNA clone: QtsA-12581, similar to human
           zinc finger protein 285 (ZNF285), mRNA, RefSeq:
           NM_152354.2
          Length = 2828

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 83  cttatcattggtcaccagtc 102
           ||||||||||||||||||||
Sbjct: 140 cttatcattggtcaccagtc 121
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>gb|AC024323.4|AC024323 Homo sapiens, clone RP11-28O13, complete sequence
          Length = 137242

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 193   gctctttggaaagcccatac 212
             ||||||||||||||||||||
Sbjct: 67519 gctctttggaaagcccatac 67500
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>gb|AY613075.1| Ourisia coccinea var. elegans voucher Meudt & Lopez 007, TEX
           external transcribed spacer and 18S ribosomal RNA gene,
           partial sequence
          Length = 445

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 110 gacgacatctcgtgcatgct 129
           ||||||||||||||||||||
Sbjct: 9   gacgacatctcgtgcatgct 28
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>gb|AY613070.1| Ourisia alpina voucher Meudt et al. 040, TEX external transcribed
           spacer and 18S ribosomal RNA gene, partial sequence
          Length = 446

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 110 gacgacatctcgtgcatgct 129
           ||||||||||||||||||||
Sbjct: 9   gacgacatctcgtgcatgct 28
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>gb|AC092843.4| Homo sapiens BAC clone RP11-419O4 from 2, complete sequence
          Length = 83412

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 165  atgtcaagaaggcttcaccc 184
            ||||||||||||||||||||
Sbjct: 3844 atgtcaagaaggcttcaccc 3863
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>dbj|AP005627.1| Homo sapiens genomic DNA, chromosome 8q23, clone:KB229B8, complete
            sequence
          Length = 95577

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 193  gctctttggaaagcccatac 212
            ||||||||||||||||||||
Sbjct: 8500 gctctttggaaagcccatac 8519


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,938,034
Number of Sequences: 3902068
Number of extensions: 1938034
Number of successful extensions: 30562
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30526
Number of HSP's gapped (non-prelim): 31
length of query: 247
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 225
effective length of database: 17,147,199,772
effective search space: 3858119948700
effective search space used: 3858119948700
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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