ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd22n02 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB219969.1| Triticum aestivum WAP2 mRNA for aspartic proteinase, complete cds Length = 1560 Score = 470 bits (237), Expect = e-129 Identities = 291/309 (94%) Strand = Plus / Plus Query: 188 accatggggcagaggctcctcttattggtgaccacttgtctgtgggccatttcatgcgcc 247 |||||||||||||||||||| ||| |||||||||| ||||||||||| ||||||||||| Sbjct: 20 accatggggcagaggctcctattactggtgaccacctgtctgtgggctctttcatgcgcc 79 Query: 248 gtgccgcaccatgcttcctcgcgtgacggactgctaaggatcaacctcaacaagaggagc 307 ||||||||||| |||||||||||||| |||||||| ||||||||||||||||||| |||| Sbjct: 80 gtgccgcaccacgcttcctcgcgtgatggactgcttaggatcaacctcaacaagaagagc 139 Query: 308 ttgacccatgagtctctggccgcggcaaaggccgcgaggcagtacggcgccctccgactg 367 ||||||||||| ||||||||||| |||||||||||||||||| ||| |||||||||||| Sbjct: 140 ttgacccatgaatctctggccgcagcaaaggccgcgaggcagcacgatgccctccgactg 199 Query: 368 aagagcggcaattcagacagcgacatcgtgcctcttgtcgactacctcaacacccagtac 427 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 200 aagagcggcaattcagacagcgacatcgtgcctcttgtcgactacctcaacacacagtac 259 Query: 428 tatggggtgatcggcctcggcacgccgccgcagaatttcacggtgatattcgacaccggg 487 |||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct: 260 tatggggtcatcggcctcggcacgccgccgcagaatttcacagtgatatttgacaccggg 319 Query: 488 agctccaac 496 ||||||||| Sbjct: 320 agctccaac 328
>ref|XM_475576.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1491 Score = 127 bits (64), Expect = 4e-26 Identities = 115/132 (87%) Strand = Plus / Plus Query: 365 ctgaagagcggcaattcagacagcgacatcgtgcctcttgtcgactacctcaacacccag 424 ||||||| ||||| ||||||||| || || ||||| || |||||||||||||||||| Sbjct: 169 ctgaagaccggcagttcagacagtgatcctgtccctctggtggactacctcaacacccag 228 Query: 425 tactatggggtgatcggcctcggcacgccgccgcagaatttcacggtgatattcgacacc 484 |||||||||||||| ||||||||| | ||||||||||| |||||||||||||| ||||| Sbjct: 229 tactatggggtgattggcctcggctcaccgccgcagaacttcacggtgatatttgacact 288 Query: 485 gggagctccaac 496 || ||||||||| Sbjct: 289 ggaagctccaac 300 Score = 44.1 bits (22), Expect = 0.43 Identities = 58/70 (82%) Strand = Plus / Plus Query: 198 agaggctcctcttattggtgaccacttgtctgtgggccatttcatgcgccgtgccgcacc 257 |||||| |||||| |||||||| |||||| ||||||| | ||||| ||| ||| || | Sbjct: 8 agaggcacctcttgttggtgacaacttgtttgtgggctctgtcatgtgccttgctgcttc 67 Query: 258 atgcttcctc 267 |||||||||| Sbjct: 68 atgcttcctc 77
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 127 bits (64), Expect = 4e-26 Identities = 115/132 (87%) Strand = Plus / Plus Query: 365 ctgaagagcggcaattcagacagcgacatcgtgcctcttgtcgactacctcaacacccag 424 ||||||| ||||| ||||||||| || || ||||| || |||||||||||||||||| Sbjct: 2115425 ctgaagaccggcagttcagacagtgatcctgtccctctggtggactacctcaacacccag 2115484 Query: 425 tactatggggtgatcggcctcggcacgccgccgcagaatttcacggtgatattcgacacc 484 |||||||||||||| ||||||||| | ||||||||||| |||||||||||||| ||||| Sbjct: 2115485 tactatggggtgattggcctcggctcaccgccgcagaacttcacggtgatatttgacact 2115544 Query: 485 gggagctccaac 496 || ||||||||| Sbjct: 2115545 ggaagctccaac 2115556 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 422 cagtactatggggtgatcggcctcggcacgccgccgcagaatttcacggtgatattcgac 481 ||||||| |||| ||| ||| ||||||| ||||||||||| ||||| || || |||||| Sbjct: 28012517 cagtacttcggggagattggcgtcggcactccgccgcagaaattcaccgtcatcttcgac 28012576 Query: 482 accgggagctccaac 496 || || ||||||||| Sbjct: 28012577 actggcagctccaac 28012591 Score = 44.1 bits (22), Expect = 0.43 Identities = 58/70 (82%) Strand = Plus / Plus Query: 198 agaggctcctcttattggtgaccacttgtctgtgggccatttcatgcgccgtgccgcacc 257 |||||| |||||| |||||||| |||||| ||||||| | ||||| ||| ||| || | Sbjct: 2115264 agaggcacctcttgttggtgacaacttgtttgtgggctctgtcatgtgccttgctgcttc 2115323 Query: 258 atgcttcctc 267 |||||||||| Sbjct: 2115324 atgcttcctc 2115333
>dbj|AK065206.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002F13, full insert sequence Length = 1900 Score = 127 bits (64), Expect = 4e-26 Identities = 115/132 (87%) Strand = Plus / Plus Query: 365 ctgaagagcggcaattcagacagcgacatcgtgcctcttgtcgactacctcaacacccag 424 ||||||| ||||| ||||||||| || || ||||| || |||||||||||||||||| Sbjct: 321 ctgaagaccggcagttcagacagtgatcctgtccctctggtggactacctcaacacccag 380 Query: 425 tactatggggtgatcggcctcggcacgccgccgcagaatttcacggtgatattcgacacc 484 |||||||||||||| ||||||||| | ||||||||||| |||||||||||||| ||||| Sbjct: 381 tactatggggtgattggcctcggctcaccgccgcagaacttcacggtgatatttgacact 440 Query: 485 gggagctccaac 496 || ||||||||| Sbjct: 441 ggaagctccaac 452 Score = 44.1 bits (22), Expect = 0.43 Identities = 58/70 (82%) Strand = Plus / Plus Query: 198 agaggctcctcttattggtgaccacttgtctgtgggccatttcatgcgccgtgccgcacc 257 |||||| |||||| |||||||| |||||| ||||||| | ||||| ||| ||| || | Sbjct: 160 agaggcacctcttgttggtgacaacttgtttgtgggctctgtcatgtgccttgctgcttc 219 Query: 258 atgcttcctc 267 |||||||||| Sbjct: 220 atgcttcctc 229
>dbj|D12777.1|RICASPPRO Oryza sativa (japonica cultivar-group) mRNA for aspartic proteinase, complete cds Length = 1774 Score = 127 bits (64), Expect = 4e-26 Identities = 115/132 (87%) Strand = Plus / Plus Query: 365 ctgaagagcggcaattcagacagcgacatcgtgcctcttgtcgactacctcaacacccag 424 ||||||| ||||| ||||||||| || || ||||| || |||||||||||||||||| Sbjct: 250 ctgaagaccggcagttcagacagtgatcctgtccctctggtggactacctcaacacccag 309 Query: 425 tactatggggtgatcggcctcggcacgccgccgcagaatttcacggtgatattcgacacc 484 |||||||||||||| ||||||||| | ||||||||||| |||||||||||||| ||||| Sbjct: 310 tactatggggtgattggcctcggctcaccgccgcagaacttcacggtgatatttgacact 369 Query: 485 gggagctccaac 496 || ||||||||| Sbjct: 370 ggaagctccaac 381
>gb|AC093490.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1127_B08, complete sequence Length = 112268 Score = 127 bits (64), Expect = 4e-26 Identities = 115/132 (87%) Strand = Plus / Plus Query: 365 ctgaagagcggcaattcagacagcgacatcgtgcctcttgtcgactacctcaacacccag 424 ||||||| ||||| ||||||||| || || ||||| || |||||||||||||||||| Sbjct: 82266 ctgaagaccggcagttcagacagtgatcctgtccctctggtggactacctcaacacccag 82325 Query: 425 tactatggggtgatcggcctcggcacgccgccgcagaatttcacggtgatattcgacacc 484 |||||||||||||| ||||||||| | ||||||||||| |||||||||||||| ||||| Sbjct: 82326 tactatggggtgattggcctcggctcaccgccgcagaacttcacggtgatatttgacact 82385 Query: 485 gggagctccaac 496 || ||||||||| Sbjct: 82386 ggaagctccaac 82397
>ref|NM_192504.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1560 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Plus Query: 408 actacctcaacacccagtactatggggtgatcggcctcggcacgccgccgcagaatttca 467 ||||||||||| | |||||||| || | ||||| | |||||||||||||||||| |||| Sbjct: 275 actacctcaacgcgcagtactacggcgagatcgccatcggcacgccgccgcagatgttca 334 Query: 468 cggtgatattcgacaccgggagctccaac 496 | || || ||||||||||||||||||||| Sbjct: 335 ccgtcatcttcgacaccgggagctccaac 363
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Minus Query: 408 actacctcaacacccagtactatggggtgatcggcctcggcacgccgccgcagaatttca 467 ||||||||||| | |||||||| || | ||||| | |||||||||||||||||| |||| Sbjct: 27084799 actacctcaacgcgcagtactacggcgagatcgccatcggcacgccgccgcagatgttca 27084740 Query: 468 cggtgatattcgacaccgggagctccaac 496 | || || ||||||||||||||||||||| Sbjct: 27084739 ccgtcatcttcgacaccgggagctccaac 27084711 Score = 65.9 bits (33), Expect = 1e-07 Identities = 75/89 (84%) Strand = Plus / Minus Query: 408 actacctcaacacccagtactatggggtgatcggcctcggcacgccgccgcagaatttca 467 ||||||| |||| ||||||| ||| | ||||||| ||||||| || || ||||| |||| Sbjct: 10492895 actacctggacacgcagtactttggagagatcggcatcggcactccaccacagaacttca 10492836 Query: 468 cggtgatattcgacaccgggagctccaac 496 | |||||||||||||| || ||||||||| Sbjct: 10492835 ctgtgatattcgacactggaagctccaac 10492807 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 455 ccgcagaatttcacggtgatattcgacaccgggagctccaac 496 ||||||||||| |||||| | || |||||||||||||||||| Sbjct: 25287893 ccgcagaattttacggtggtctttgacaccgggagctccaac 25287934 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 444 tcggcacgccgccgcagaatttcac 468 |||||||||||||||||||| |||| Sbjct: 36262597 tcggcacgccgccgcagaatgtcac 36262573
>dbj|AP003284.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0671D01 Length = 163006 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Minus Query: 408 actacctcaacacccagtactatggggtgatcggcctcggcacgccgccgcagaatttca 467 ||||||||||| | |||||||| || | ||||| | |||||||||||||||||| |||| Sbjct: 143630 actacctcaacgcgcagtactacggcgagatcgccatcggcacgccgccgcagatgttca 143571 Query: 468 cggtgatattcgacaccgggagctccaac 496 | || || ||||||||||||||||||||| Sbjct: 143570 ccgtcatcttcgacaccgggagctccaac 143542
>dbj|AK072645.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023131B07, full insert sequence Length = 1576 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Plus Query: 408 actacctcaacacccagtactatggggtgatcggcctcggcacgccgccgcagaatttca 467 ||||||||||| | |||||||| || | ||||| | |||||||||||||||||| |||| Sbjct: 45 actacctcaacgcgcagtactacggcgagatcgccatcggcacgccgccgcagatgttca 104 Query: 468 cggtgatattcgacaccgggagctccaac 496 | || || ||||||||||||||||||||| Sbjct: 105 ccgtcatcttcgacaccgggagctccaac 133
>dbj|AK072283.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023016B15, full insert sequence Length = 1862 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Plus Query: 408 actacctcaacacccagtactatggggtgatcggcctcggcacgccgccgcagaatttca 467 ||||||||||| | |||||||| || | ||||| | |||||||||||||||||| |||| Sbjct: 391 actacctcaacgcgcagtactacggcgagatcgccatcggcacgccgccgcagatgttca 450 Query: 468 cggtgatattcgacaccgggagctccaac 496 | || || ||||||||||||||||||||| Sbjct: 451 ccgtcatcttcgacaccgggagctccaac 479
>dbj|AB219968.1| Triticum aestivum WAP1 mRNA for aspartic proteinase, complete cds Length = 1527 Score = 77.8 bits (39), Expect = 3e-11 Identities = 66/75 (88%) Strand = Plus / Plus Query: 422 cagtactatggggtgatcggcctcggcacgccgccgcagaatttcacggtgatattcgac 481 ||||||| |||| ||||||| ||||||||||||||||||| ||||| || || |||||| Sbjct: 244 cagtacttcggggagatcggcgtcggcacgccgccgcagaagttcaccgtcatcttcgac 303 Query: 482 accgggagctccaac 496 ||||| ||||||||| Sbjct: 304 accggcagctccaac 318
>emb|X56136.1|HVASPROT Barley mRNA for aspartic proteinase Length = 1800 Score = 73.8 bits (37), Expect = 5e-10 Identities = 67/77 (87%) Strand = Plus / Plus Query: 420 cccagtactatggggtgatcggcctcggcacgccgccgcagaatttcacggtgatattcg 479 ||||||||| |||| ||||||| |||||||||| |||||||| ||||| || || |||| Sbjct: 280 cccagtacttcggggagatcggcgtcggcacgcctccgcagaagttcaccgtcatcttcg 339 Query: 480 acaccgggagctccaac 496 ||||||| ||||||||| Sbjct: 340 acaccggcagctccaac 356
>ref|NM_183594.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1488 Score = 65.9 bits (33), Expect = 1e-07 Identities = 75/89 (84%) Strand = Plus / Plus Query: 408 actacctcaacacccagtactatggggtgatcggcctcggcacgccgccgcagaatttca 467 ||||||| |||| ||||||| ||| | ||||||| ||||||| || || ||||| |||| Sbjct: 209 actacctggacacgcagtactttggagagatcggcatcggcactccaccacagaacttca 268 Query: 468 cggtgatattcgacaccgggagctccaac 496 | |||||||||||||| || ||||||||| Sbjct: 269 ctgtgatattcgacactggaagctccaac 297
>dbj|AP002480.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0469E05 Length = 160769 Score = 65.9 bits (33), Expect = 1e-07 Identities = 75/89 (84%) Strand = Plus / Minus Query: 408 actacctcaacacccagtactatggggtgatcggcctcggcacgccgccgcagaatttca 467 ||||||| |||| ||||||| ||| | ||||||| ||||||| || || ||||| |||| Sbjct: 137855 actacctggacacgcagtactttggagagatcggcatcggcactccaccacagaacttca 137796 Query: 468 cggtgatattcgacaccgggagctccaac 496 | |||||||||||||| || ||||||||| Sbjct: 137795 ctgtgatattcgacactggaagctccaac 137767
>dbj|AK100420.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023088B02, full insert sequence Length = 1853 Score = 65.9 bits (33), Expect = 1e-07 Identities = 75/89 (84%) Strand = Plus / Plus Query: 408 actacctcaacacccagtactatggggtgatcggcctcggcacgccgccgcagaatttca 467 ||||||| |||| ||||||| ||| | ||||||| ||||||| || || ||||| |||| Sbjct: 320 actacctggacacgcagtactttggagagatcggcatcggcactccaccacagaacttca 379 Query: 468 cggtgatattcgacaccgggagctccaac 496 | |||||||||||||| || ||||||||| Sbjct: 380 ctgtgatattcgacactggaagctccaac 408
>dbj|AK072264.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023005B17, full insert sequence Length = 1778 Score = 65.9 bits (33), Expect = 1e-07 Identities = 75/89 (84%) Strand = Plus / Plus Query: 408 actacctcaacacccagtactatggggtgatcggcctcggcacgccgccgcagaatttca 467 ||||||| |||| ||||||| ||| | ||||||| ||||||| || || ||||| |||| Sbjct: 293 actacctggacacgcagtactttggagagatcggcatcggcactccaccacagaacttca 352 Query: 468 cggtgatattcgacaccgggagctccaac 496 | |||||||||||||| || ||||||||| Sbjct: 353 ctgtgatattcgacactggaagctccaac 381
>dbj|AK066523.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013071P15, full insert sequence Length = 2061 Score = 65.9 bits (33), Expect = 1e-07 Identities = 75/89 (84%) Strand = Plus / Plus Query: 408 actacctcaacacccagtactatggggtgatcggcctcggcacgccgccgcagaatttca 467 ||||||| |||| ||||||| ||| | ||||||| ||||||| || || ||||| |||| Sbjct: 374 actacctggacacgcagtactttggagagatcggcatcggcactccaccacagaacttca 433 Query: 468 cggtgatattcgacaccgggagctccaac 496 | |||||||||||||| || ||||||||| Sbjct: 434 ctgtgatattcgacactggaagctccaac 462
>gb|AY103982.1| Zea mays PCO140262 mRNA sequence Length = 1929 Score = 65.9 bits (33), Expect = 1e-07 Identities = 75/89 (84%) Strand = Plus / Plus Query: 408 actacctcaacacccagtactatggggtgatcggcctcggcacgccgccgcagaatttca 467 ||||||| |||||||||||| ||| |||| || |||||||||| || ||||| |||| Sbjct: 373 actacctggacacccagtactttggacagatcagcatcggcacgccaccacagaacttca 432 Query: 468 cggtgatattcgacaccgggagctccaac 496 | |||||||||||||| || ||||||||| Sbjct: 433 cagtgatattcgacactggaagctccaac 461
>gb|AC120986.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1781_H11, complete sequence Length = 204649 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 422 cagtactatggggtgatcggcctcggcacgccgccgcagaatttcacggtgatattcgac 481 ||||||| |||| ||| ||| ||||||| ||||||||||| ||||| || || |||||| Sbjct: 92682 cagtacttcggggagattggcgtcggcactccgccgcagaaattcaccgtcatcttcgac 92741 Query: 482 accgggagctccaac 496 || || ||||||||| Sbjct: 92742 actggcagctccaac 92756
>dbj|AK104838.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-E12, full insert sequence Length = 1777 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 422 cagtactatggggtgatcggcctcggcacgccgccgcagaatttcacggtgatattcgac 481 ||||||| |||| ||| ||| ||||||| ||||||||||| ||||| || || |||||| Sbjct: 313 cagtacttcggggagattggcgtcggcactccgccgcagaaattcaccgtcatcttcgac 372 Query: 482 accgggagctccaac 496 || || ||||||||| Sbjct: 373 actggcagctccaac 387
>dbj|AK103421.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033128K05, full insert sequence Length = 1818 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 422 cagtactatggggtgatcggcctcggcacgccgccgcagaatttcacggtgatattcgac 481 ||||||| |||| ||| ||| ||||||| ||||||||||| ||||| || || |||||| Sbjct: 314 cagtacttcggggagattggcgtcggcactccgccgcagaaattcaccgtcatcttcgac 373 Query: 482 accgggagctccaac 496 || || ||||||||| Sbjct: 374 actggcagctccaac 388
>dbj|AK098911.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002H22, full insert sequence Length = 1844 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 422 cagtactatggggtgatcggcctcggcacgccgccgcagaatttcacggtgatattcgac 481 ||||||| |||| ||| ||| ||||||| ||||||||||| ||||| || || |||||| Sbjct: 316 cagtacttcggggagattggcgtcggcactccgccgcagaaattcaccgtcatcttcgac 375 Query: 482 accgggagctccaac 496 || || ||||||||| Sbjct: 376 actggcagctccaac 390
>dbj|AK098906.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002D14, full insert sequence Length = 1843 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 422 cagtactatggggtgatcggcctcggcacgccgccgcagaatttcacggtgatattcgac 481 ||||||| |||| ||| ||| ||||||| ||||||||||| ||||| || || |||||| Sbjct: 311 cagtacttcggggagattggcgtcggcactccgccgcagaaattcaccgtcatcttcgac 370 Query: 482 accgggagctccaac 496 || || ||||||||| Sbjct: 371 actggcagctccaac 385
>dbj|AK067742.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116C15, full insert sequence Length = 1869 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 422 cagtactatggggtgatcggcctcggcacgccgccgcagaatttcacggtgatattcgac 481 ||||||| |||| ||| ||| ||||||| ||||||||||| ||||| || || |||||| Sbjct: 314 cagtacttcggggagattggcgtcggcactccgccgcagaaattcaccgtcatcttcgac 373 Query: 482 accgggagctccaac 496 || || ||||||||| Sbjct: 374 actggcagctccaac 388
>dbj|AK066453.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059L24, full insert sequence Length = 2543 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 422 cagtactatggggtgatcggcctcggcacgccgccgcagaatttcacggtgatattcgac 481 ||||||| |||| ||| ||| ||||||| ||||||||||| ||||| || || |||||| Sbjct: 945 cagtacttcggggagattggcgtcggcactccgccgcagaaattcaccgtcatcttcgac 1004 Query: 482 accgggagctccaac 496 || || ||||||||| Sbjct: 1005 actggcagctccaac 1019
>dbj|D32165.1|RICAP Rice gene for aspartic protease, complete cds Length = 6782 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 422 cagtactatggggtgatcggcctcggcacgccgccgcagaatttcacggtgatattcgac 481 ||||||| |||| ||| ||| ||||||| ||||||||||| ||||| || || |||||| Sbjct: 2040 cagtacttcggggagattggcgtcggcactccgccgcagaaattcaccgtcatcttcgac 2099 Query: 482 accgggagctccaac 496 || || ||||||||| Sbjct: 2100 actggcagctccaac 2114
>dbj|D32144.1|RICAPA Rice mRNA for aspartic protease, complete cds Length = 2030 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 422 cagtactatggggtgatcggcctcggcacgccgccgcagaatttcacggtgatattcgac 481 ||||||| |||| ||| ||| ||||||| ||||||||||| ||||| || || |||||| Sbjct: 303 cagtacttcggggagattggcgtcggcactccgccgcagaaattcaccgtcatcttcgac 362 Query: 482 accgggagctccaac 496 || || ||||||||| Sbjct: 363 actggcagctccaac 377
>ref|NM_192943.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1533 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 455 ccgcagaatttcacggtgatattcgacaccgggagctccaac 496 ||||||||||| |||||| | || |||||||||||||||||| Sbjct: 292 ccgcagaattttacggtggtctttgacaccgggagctccaac 333
>dbj|AP003681.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1158C05 Length = 145514 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 455 ccgcagaatttcacggtgatattcgacaccgggagctccaac 496 ||||||||||| |||||| | || |||||||||||||||||| Sbjct: 84937 ccgcagaattttacggtggtctttgacaccgggagctccaac 84978
>gb|DQ417605.1| Bombyx mori aspartic protease (CatD) gene, complete cds Length = 6201 Score = 50.1 bits (25), Expect = 0.007 Identities = 55/65 (84%) Strand = Plus / Plus Query: 422 cagtactatggggtgatcggcctcggcacgccgccgcagaatttcacggtgatattcgac 481 |||||||| || |||||| | ||||||||||||||||| |||| |||| |||||||| Sbjct: 2279 cagtactacggagtgatcagtatcggcacgccgccgcagtcgttcaaggtggtattcgac 2338 Query: 482 accgg 486 ||||| Sbjct: 2339 accgg 2343
>gb|AY297160.1| Bombyx mori cathepsin D mRNA, complete cds Length = 1366 Score = 50.1 bits (25), Expect = 0.007 Identities = 55/65 (84%) Strand = Plus / Plus Query: 422 cagtactatggggtgatcggcctcggcacgccgccgcagaatttcacggtgatattcgac 481 |||||||| || |||||| | ||||||||||||||||| |||| |||| |||||||| Sbjct: 334 cagtactacggagtgatcagtatcggcacgccgccgcagtcgttcaaggtggtattcgac 393 Query: 482 accgg 486 ||||| Sbjct: 394 accgg 398
>gb|DQ010007.1| Bombyx mori CathD mRNA, complete cds Length = 1543 Score = 50.1 bits (25), Expect = 0.007 Identities = 55/65 (84%) Strand = Plus / Plus Query: 422 cagtactatggggtgatcggcctcggcacgccgccgcagaatttcacggtgatattcgac 481 |||||||| || |||||| | ||||||||||||||||| |||| |||| |||||||| Sbjct: 371 cagtactacggagtgatcagtatcggcacgccgccgcagtcgttcaaggtggtattcgac 430 Query: 482 accgg 486 ||||| Sbjct: 431 accgg 435
>ref|NM_001009299.1| Ovis aries renin (REN), mRNA Length = 1417 Score = 46.1 bits (23), Expect = 0.11 Identities = 38/43 (88%) Strand = Plus / Plus Query: 408 actacctcaacacccagtactatggggtgatcggcctcggcac 450 ||||||| |||||||||||||||| | ||||||| ||||||| Sbjct: 265 actacctggacacccagtactatggtgagatcggcatcggcac 307
>gb|AY181028.1| Ancylostoma ceylanicum cathepsin D-like aspartic protease mRNA, complete cds Length = 1442 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Plus Query: 456 cgcagaatttcacggtgatattcgacaccgg 486 ||||||||||||| ||||| ||||||||||| Sbjct: 331 cgcagaatttcacagtgattttcgacaccgg 361
>gb|U34888.1|ACU34888 Ancylostoma caninum aspartic protease (Acasp1) mRNA, partial cds Length = 1413 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Plus Query: 456 cgcagaatttcacggtgatattcgacaccgg 486 ||||||||||||| ||||| ||||||||||| Sbjct: 293 cgcagaatttcacagtgattttcgacaccgg 323
>gb|L43524.1|SHPRENI Ovis aries renin mRNA, complete cds Length = 1417 Score = 46.1 bits (23), Expect = 0.11 Identities = 38/43 (88%) Strand = Plus / Plus Query: 408 actacctcaacacccagtactatggggtgatcggcctcggcac 450 ||||||| |||||||||||||||| | ||||||| ||||||| Sbjct: 265 actacctggacacccagtactatggtgagatcggcatcggcac 307
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 326 gccgcggcaaaggccgcgaggc 347 |||||||||||||||||||||| Sbjct: 2487706 gccgcggcaaaggccgcgaggc 2487727
>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB Length = 1683333 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 137 cgccgacgcagcggcgcaggcg 158 |||||||||||||||||||||| Sbjct: 312026 cgccgacgcagcggcgcaggcg 312005
>ref|NM_190573.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1329 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 444 tcggcacgccgccgcagaatttcac 468 |||||||||||||||||||| |||| Sbjct: 215 tcggcacgccgccgcagaatgtcac 239
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 323 ctggccgcggcaaaggccgcg 343 ||||||||||||||||||||| Sbjct: 3659211 ctggccgcggcaaaggccgcg 3659231
>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome Length = 2560265 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 409 ctacctcaacacccagtacta 429 ||||||||||||||||||||| Sbjct: 229077 ctacctcaacacccagtacta 229057
>gb|AC131746.3| Mus musculus BAC clone RP23-62F20 from 3, complete sequence Length = 201620 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 220 cacttgtctgtgggccatttc 240 ||||||||||||||||||||| Sbjct: 87402 cacttgtctgtgggccatttc 87382
>emb|BX842582.1| Mycobacterium tuberculosis H37Rv complete genome; segment 11/13 Length = 349563 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 323 ctggccgcggcaaaggccgcg 343 ||||||||||||||||||||| Sbjct: 196712 ctggccgcggcaaaggccgcg 196732
>emb|BX248345.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 12/14 Length = 308050 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 323 ctggccgcggcaaaggccgcg 343 ||||||||||||||||||||| Sbjct: 175900 ctggccgcggcaaaggccgcg 175920
>gb|AC153661.4| Mus musculus BAC clone RP23-152L5 from chromosome 3, complete sequence Length = 203476 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 220 cacttgtctgtgggccatttc 240 ||||||||||||||||||||| Sbjct: 186088 cacttgtctgtgggccatttc 186068
>dbj|AP003251.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0446B05 Length = 149145 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 444 tcggcacgccgccgcagaatttcac 468 |||||||||||||||||||| |||| Sbjct: 12474 tcggcacgccgccgcagaatgtcac 12450
>dbj|AP003240.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0406G08 Length = 144233 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 444 tcggcacgccgccgcagaatttcac 468 |||||||||||||||||||| |||| Sbjct: 139610 tcggcacgccgccgcagaatgtcac 139586
>gb|DQ216452.1| Taeniopygia guttata clone 0058P0014E08 prepro-cathepsin D-like mRNA, complete sequence Length = 1382 Score = 40.1 bits (20), Expect = 6.7 Identities = 53/64 (82%) Strand = Plus / Plus Query: 420 cccagtactatggggtgatcggcctcggcacgccgccgcagaatttcacggtgatattcg 479 ||||||| | ||| |||||||| |||| || ||||| ||||||||||| ||||| || | Sbjct: 270 cccagtattttggtgtgatcggtatcggaacaccgccccagaatttcaccgtgatctttg 329 Query: 480 acac 483 |||| Sbjct: 330 acac 333
>ref|XM_654430.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN1918.2), mRNA Length = 1671 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 tgtcgactacctcaacaccc 422 |||||||||||||||||||| Sbjct: 354 tgtcgactacctcaacaccc 373
>ref|XM_501928.1| Yarrowia lipolytica CLIB122, YALI0C16995g predicted mRNA Length = 1671 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 tgtcgactacctcaacaccc 422 |||||||||||||||||||| Sbjct: 351 tgtcgactacctcaacaccc 370
>emb|AJ586914.1| Physcomitrella patens mRNA for putative vacuolar aspartic proteinase (ORF1) Length = 1940 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 476 ttcgacaccgggagctccaa 495 |||||||||||||||||||| Sbjct: 668 ttcgacaccgggagctccaa 687
>gb|AY113207.1| Drosophila melanogaster AT05209 full insert cDNA Length = 1442 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 449 acgccgccgcagaatttcacggtgatattcga 480 ||||||||||||| |||| |||||||||||| Sbjct: 291 acgccgccgcagacattcaaggtgatattcga 322
>dbj|AB226268.1| Aspergillus oryzae cDNA, contig sequence: AoEST3128 Length = 2249 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 tgtcgactacctcaacaccc 422 |||||||||||||||||||| Sbjct: 671 tgtcgactacctcaacaccc 690
>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 Length = 4170692 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 tgtcgactacctcaacaccc 422 |||||||||||||||||||| Sbjct: 471588 tgtcgactacctcaacaccc 471607
>ref|NM_137117.1| Drosophila melanogaster CG10104-RA (CG10104), mRNA Length = 1541 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 449 acgccgccgcagaatttcacggtgatattcga 480 ||||||||||||| |||| |||||||||||| Sbjct: 291 acgccgccgcagacattcaaggtgatattcga 322
>gb|AY049067.1| Emericella nidulans phosphoenolpyruvate carboxykinase (acuF) gene, complete cds Length = 4709 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 tgtcgactacctcaacaccc 422 |||||||||||||||||||| Sbjct: 3114 tgtcgactacctcaacaccc 3133
>gb|AC182808.1| Gasterosteus aculeatus clone VMRC28-105K03, complete sequence Length = 124886 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 298 caagaggagcttgacccatgagtc 321 ||||||| |||||||||||||||| Sbjct: 22687 caagaggtgcttgacccatgagtc 22710
>gb|AC008229.3|AC008229 Drosophila melanogaster, chromosome 2R, region 51E-51F, BAC clone BACR16C17, complete sequence Length = 180425 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 449 acgccgccgcagaatttcacggtgatattcga 480 ||||||||||||| |||| |||||||||||| Sbjct: 158965 acgccgccgcagacattcaaggtgatattcga 158996
>gb|AE003814.3| Drosophila melanogaster chromosome 2R, section 36 of 73 of the complete sequence Length = 254438 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 449 acgccgccgcagaatttcacggtgatattcga 480 ||||||||||||| |||| |||||||||||| Sbjct: 14402 acgccgccgcagacattcaaggtgatattcga 14433
>gb|AF036319.1|AF036319 Sparus aurata cathepsin D mRNA, complete cds Length = 1837 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 420 cccagtactatggggtgatc 439 |||||||||||||||||||| Sbjct: 299 cccagtactatggggtgatc 318
>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica Length = 3272609 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 tgtcgactacctcaacaccc 422 |||||||||||||||||||| Sbjct: 2406636 tgtcgactacctcaacaccc 2406655 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,275,110 Number of Sequences: 3902068 Number of extensions: 2275110 Number of successful extensions: 41416 Number of sequences better than 10.0: 63 Number of HSP's better than 10.0 without gapping: 66 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41034 Number of HSP's gapped (non-prelim): 382 length of query: 496 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 474 effective length of database: 17,147,199,772 effective search space: 8127772691928 effective search space used: 8127772691928 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
