ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd22m08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AB109216.1| Triticum aestivum mRNA for cysteine protease, co... 402 e-109
2gb|AY144442.1| Sorghum bicolor BAC 95A23/98N8.1 Rph region, part... 48 0.029
3emb|Z97353.3|HS90L6 Human DNA sequence from clone RP1-90L6 on ch... 44 0.46
4dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 44 0.46
5gb|AY688678.1| Mus musculus plexin D1 (Plxnd1) mRNA, complete cds 42 1.8
6gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.8
7emb|AL732484.13| Mouse DNA sequence from clone RP23-37B7 on chro... 42 1.8
8gb|AF461424.2| Oryza sativa chromosome 3 clone OSJNBa0016B07, co... 42 1.8
9ref|NM_026376.1| Mus musculus plexin D1 (Plxnd1), mRNA 42 1.8
10dbj|AK147513.1| Mus musculus cDNA, RIKEN full-length enriched li... 42 1.8
11gb|AC008875.9| Homo sapiens chromosome 5 clone CTD-2201E18, comp... 42 1.8
12gb|AC008945.6|AC008945 Homo sapiens chromosome 5 clone CTD-2325A... 42 1.8
13dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
14dbj|AK129175.1| Mus musculus mRNA for mKIAA0620 protein 42 1.8
15gb|AC137071.3| Genomic sequence for Oryza sativa, Nipponbare str... 42 1.8
16gb|AC139761.4| Mus musculus BAC clone RP23-223C23 from 6, comple... 42 1.8
17gb|AE010354.1| Methanopyrus kandleri AV19 section 53 of 157 of t... 40 7.2
18ref|XM_470991.1| Oryza sativa (japonica cultivar-group), predic... 40 7.2
19ref|XM_476390.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.2
20ref|NM_001024510.1| Bos taurus coronin, actin binding protein, 1... 40 7.2
21gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 7.2
22ref|XM_545531.2| PREDICTED: Canis familiaris similar to Wiskott-... 40 7.2
23ref|XM_533732.2| PREDICTED: Canis familiaris similar to plexin D... 40 7.2
24ref|XM_571678.1| Cryptococcus neoformans var. neoformans JEC21 4... 40 7.2
25ref|XM_808517.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 7.2
26gb|AC015751.10| Homo sapiens chromosome 17, clone RP11-1J8, comp... 40 7.2
27ref|XM_501915.1| Yarrowia lipolytica CLIB122, YALI0C16709g predi... 40 7.2
28gb|AC025105.10| Homo sapiens chromosome 18, clone RP11-695P1, co... 40 7.2
29gb|BC103376.1| Bos taurus coronin, actin binding protein, 1B, mR... 40 7.2
30dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.2
31dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.2
32gb|AC022078.12|AC022078 Homo sapiens 12p BAC RP11-498P8 (Roswell... 40 7.2
33dbj|AP004342.5| Oryza sativa (japonica cultivar-group) genomic D... 40 7.2
34gb|BT021806.1| Bos taurus coronin, actin binding protein, 1B (CO... 40 7.2
35dbj|AK110974.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.2
36gb|AF184956.1|AF184956 Bacillus subtilis mycosubtilin operon, co... 40 7.2
37emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid compl... 40 7.2
38dbj|AP003759.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.2
39gb|AY110841.1| Zea mays CL908_1 mRNA sequence 40 7.2
40emb|AL606620.3|OSJN00065 Oryza sativa genomic DNA, chromosome 4,... 40 7.2
41emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB1... 40 7.2
42dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 40 7.2 
>dbj|AB109216.1| Triticum aestivum mRNA for cysteine protease, complete cds
          Length = 1260

 Score =  402 bits (203), Expect = e-109
 Identities = 289/315 (91%), Gaps = 2/315 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   ctcttccgctcgttgcctctcctcgtcctcctagtcgctctgtccagcaccacattacct 61
           ||||||||||||||| |||||||||||||||||||| | ||||||||||||||||| || 
Sbjct: 46  ctcttccgctcgttggctctcctcgtcctcctagtcaccctgtccagcaccacattgccc 105

                                                                       
Query: 62  tcctcccgttctacgtccgtcgatggagaccaccatgacctgctgatgctgggtaggttc 121
           ||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 106 tcctcccgtgctacgtccggcgatggagacgaccatgacctgctgatgctgggtaggttc 165

                                                                       
Query: 122 caccgatggatgtcgtggcatggccggacgtatccgagtgccgccgagaagctgcggcgg 181
           ||||| ||||||||   ||||||||||||||| |  |||||||| |||||| ||||||||
Sbjct: 166 caccggtggatgtcagcgcatggccggacgtaccatagtgccgctgagaag-tgcggcgg 224

                                                                       
Query: 182 tttgaggcgtaccgtcgcaacgtggacctcatcgacgcctccaacagggacgccgagagg 241
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 tttgaggtgtaccgtcgcaacgtggacctcatcgacgcctccaacagggacgccgagagg 284

                                                                       
Query: 242 -ctgggctatgagctcggtgagaacgagttcaccgaccttaccaacgaggagttcatgac 300
            || |||||||||||||| |||||||||||||||||||| || ||||||||||||||| |
Sbjct: 285 cctcggctatgagctcggcgagaacgagttcaccgacctcactaacgaggagttcatggc 344

                          
Query: 301 acggtatatcggtgg 315
            |||||| |||||||
Sbjct: 345 gcggtatgtcggtgg 359



 Score =  206 bits (104), Expect = 5e-50
 Identities = 191/220 (86%)
 Strand = Plus / Plus

                                                                       
Query: 311 ggtggagccggtgctggtggtggtctcatcactactttggccggagatgtcgtggaaggg 370
           ||||||||||||| |||||||||||||||||||||||| || |||||||| || || |||
Sbjct: 367 ggtggagccggtgatggtggtggtctcatcactactttagctggagatgttgtcgagggg 426

                                                                       
Query: 371 gtggtatcatccaagaacactatcgaggggggcggtaatttgacgatgtccacctccgac 430
           | || ||||||||||||| | ||||||| ||   |||||||||||||| |  |||| |||
Sbjct: 427 gcggcatcatccaagaacgccatcgaggaggatcgtaatttgacgatgactgcctctgac 486

                                                                       
Query: 431 cctcctcggcagtttgactggagggagcatggcgctgtcacgcctgcaaagcaacaaggg 490
           ||||| |||||||| ||||||||||| ||||| |  ||||||||||| ||||||||||| 
Sbjct: 487 cctccccggcagttcgactggagggaacatggtgtcgtcacgcctgctaagcaacaagga 546

                                                   
Query: 491 gcatgcggatgctgctgggcgtttgctgcggcggcgacgg 530
           ||||| |||||||||||||| |||||||| ||||||||||
Sbjct: 547 gcatgtggatgctgctgggcatttgctgcagcggcgacgg 586
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>gb|AY144442.1| Sorghum bicolor BAC 95A23/98N8.1 Rph region, partial sequence
          Length = 268433

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                              
Query: 251    gagctcggtgagaacgagttcaccgaccttaccaacgaggagttcatg 298
              |||||||||||||  |||| ||||||||| |||| ||| |||||||||
Sbjct: 152275 gagctcggtgagacggagtacaccgacctcaccaccgacgagttcatg 152322
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>emb|Z97353.3|HS90L6 Human DNA sequence from clone RP1-90L6 on chromosome 22q11.21-11.23,
              complete sequence
          Length = 190837

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 449    tggagggagcatggcgctgtca 470
              ||||||||||||||||||||||
Sbjct: 185682 tggagggagcatggcgctgtca 185661
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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 314     ggagccggtgctggtggtggtc 335
               ||||||||||||||||||||||
Sbjct: 2310159 ggagccggtgctggtggtggtc 2310180
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>gb|AY688678.1| Mus musculus plexin D1 (Plxnd1) mRNA, complete cds
          Length = 5938

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 202  cgtggacctcatcgacgcctc 222
            |||||||||||||||||||||
Sbjct: 4561 cgtggacctcatcgacgcctc 4581
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 310      cggtggagccggtgctggtggtggt 334
                |||||||||||||| ||||||||||
Sbjct: 11004629 cggtggagccggtggtggtggtggt 11004653



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 310      cggtggagccggtgctggtggtggt 334
                |||||||||||||| ||||||||||
Sbjct: 11004479 cggtggagccggtggtggtggtggt 11004503
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>emb|AL732484.13| Mouse DNA sequence from clone RP23-37B7 on chromosome 2, complete
             sequence
          Length = 201265

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 250   tgagctcggtgagaacgagttcacc 274
             |||||||||||||||| ||||||||
Sbjct: 68197 tgagctcggtgagaacaagttcacc 68173
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>gb|AF461424.2| Oryza sativa chromosome 3 clone OSJNBa0016B07, complete sequence
          Length = 167588

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 310    cggtggagccggtgctggtggtggt 334
              |||||||||||||| ||||||||||
Sbjct: 128643 cggtggagccggtggtggtggtggt 128619



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 310    cggtggagccggtgctggtggtggt 334
              |||||||||||||| ||||||||||
Sbjct: 128493 cggtggagccggtggtggtggtggt 128469
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>ref|NM_026376.1| Mus musculus plexin D1 (Plxnd1), mRNA
          Length = 5938

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 202  cgtggacctcatcgacgcctc 222
            |||||||||||||||||||||
Sbjct: 4561 cgtggacctcatcgacgcctc 4581
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>dbj|AK147513.1| Mus musculus cDNA, RIKEN full-length enriched library,
            clone:M5C1058N16 product:plexin D1, full insert sequence
          Length = 6907

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 202  cgtggacctcatcgacgcctc 222
            |||||||||||||||||||||
Sbjct: 4602 cgtggacctcatcgacgcctc 4622
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>gb|AC008875.9| Homo sapiens chromosome 5 clone CTD-2201E18, complete sequence
          Length = 167100

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 83     gatggagaccaccatgacctgctga 107
              ||||||| |||||||||||||||||
Sbjct: 164068 gatggaggccaccatgacctgctga 164092
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>gb|AC008945.6|AC008945 Homo sapiens chromosome 5 clone CTD-2325A15, complete sequence
          Length = 193254

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 83    gatggagaccaccatgacctgctga 107
             ||||||| |||||||||||||||||
Sbjct: 50679 gatggaggccaccatgacctgctga 50703
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 310      cggtggagccggtgctggtggtggt 334
                |||||||||||||| ||||||||||
Sbjct: 11001392 cggtggagccggtggtggtggtggt 11001416



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 310      cggtggagccggtgctggtggtggt 334
                |||||||||||||| ||||||||||
Sbjct: 11001242 cggtggagccggtggtggtggtggt 11001266
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>dbj|AK129175.1| Mus musculus mRNA for mKIAA0620 protein
          Length = 6178

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 202  cgtggacctcatcgacgcctc 222
            |||||||||||||||||||||
Sbjct: 3866 cgtggacctcatcgacgcctc 3886
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>gb|AC137071.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0042B10, from chromosome 3, complete sequence
          Length = 144205

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 310   cggtggagccggtgctggtggtggt 334
             |||||||||||||| ||||||||||
Sbjct: 48114 cggtggagccggtggtggtggtggt 48138



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 310   cggtggagccggtgctggtggtggt 334
             |||||||||||||| ||||||||||
Sbjct: 47964 cggtggagccggtggtggtggtggt 47988
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>gb|AC139761.4| Mus musculus BAC clone RP23-223C23 from 6, complete sequence
          Length = 187169

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 202   cgtggacctcatcgacgcctc 222
             |||||||||||||||||||||
Sbjct: 16149 cgtggacctcatcgacgcctc 16129
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>gb|AE010354.1| Methanopyrus kandleri AV19 section 53 of 157 of the complete genome
          Length = 10290

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 352  cggagatgtcgtggaagggg 371
            ||||||||||||||||||||
Sbjct: 3112 cggagatgtcgtggaagggg 3093
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>ref|XM_470991.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1152

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 268 gttcaccgaccttaccaacgaggagttc 295
           |||||||||||| ||| |||||||||||
Sbjct: 312 gttcaccgacctcacccacgaggagttc 339
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>ref|XM_476390.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1059

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 199 caacgtggacctcatcgacgcctccaac 226
           |||||||||||||||||||  |||||||
Sbjct: 204 caacgtggacctcatcgaccgctccaac 231
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>ref|NM_001024510.1| Bos taurus coronin, actin binding protein, 1B (CORO1B), mRNA
          Length = 1865

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 225 acagggacgccgagaggctg 244
           ||||||||||||||||||||
Sbjct: 47  acagggacgccgagaggctg 28
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>gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 6, complete
               sequence
          Length = 1438950

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 274     cgaccttaccaacgaggagttcat 297
               ||||||| ||||||||||||||||
Sbjct: 1124381 cgacctttccaacgaggagttcat 1124404
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>ref|XM_545531.2| PREDICTED: Canis familiaris similar to Wiskott-Aldrich syndrome
           protein interacting protein (LOC488409), mRNA
          Length = 1690

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 314 ggagccggtgctggtggtgg 333
           ||||||||||||||||||||
Sbjct: 235 ggagccggtgctggtggtgg 254
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>ref|XM_533732.2| PREDICTED: Canis familiaris similar to plexin D1 (LOC476526), mRNA
          Length = 5781

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 203  gtggacctcatcgacgcctc 222
            ||||||||||||||||||||
Sbjct: 4405 gtggacctcatcgacgcctc 4424
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>ref|XM_571678.1| Cryptococcus neoformans var. neoformans JEC21 40s ribosomal protein
           s15 (CNF03840) partial mRNA
          Length = 740

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 274 cgaccttaccaacgaggagttcat 297
           ||||||| ||||||||||||||||
Sbjct: 138 cgacctttccaacgaggagttcat 161
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>ref|XM_808517.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053506975.20) partial mRNA
          Length = 1125

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 205 ggacctcatcgacgcctccaacag 228
           ||||||||||||||||||| ||||
Sbjct: 111 ggacctcatcgacgcctccgacag 88
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>gb|AC015751.10| Homo sapiens chromosome 17, clone RP11-1J8, complete sequence
          Length = 104948

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 88    agaccaccatgacctgctgatgct 111
             ||||||||| ||||||||||||||
Sbjct: 84230 agaccaccaagacctgctgatgct 84253
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>ref|XM_501915.1| Yarrowia lipolytica CLIB122, YALI0C16709g predicted mRNA
          Length = 4011

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 97   tgacctgctgatgctgggta 116
            ||||||||||||||||||||
Sbjct: 2446 tgacctgctgatgctgggta 2427
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>gb|AC025105.10| Homo sapiens chromosome 18, clone RP11-695P1, complete sequence
          Length = 201027

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 356   gatgtcgtggaaggggtggt 375
             ||||||||||||||||||||
Sbjct: 15154 gatgtcgtggaaggggtggt 15173
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>gb|BC103376.1| Bos taurus coronin, actin binding protein, 1B, mRNA (cDNA clone
           MGC:127322 IMAGE:7952173), complete cds
          Length = 1951

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 225 acagggacgccgagaggctg 244
           ||||||||||||||||||||
Sbjct: 59  acagggacgccgagaggctg 40
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4,
              complete sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 268    gttcaccgaccttaccaacgaggagttc 295
              |||||||||||| ||| |||||||||||
Sbjct: 463088 gttcaccgacctcacccacgaggagttc 463061
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
              complete sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 199    caacgtggacctcatcgacgcctccaac 226
              |||||||||||||||||||  |||||||
Sbjct: 463486 caacgtggacctcatcgaccgctccaac 463513
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>gb|AC022078.12|AC022078 Homo sapiens 12p BAC RP11-498P8 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 169416

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 96     atgacctgctgatgctgggt 115
              ||||||||||||||||||||
Sbjct: 146303 atgacctgctgatgctgggt 146322
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>dbj|AP004342.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0585H11
          Length = 149371

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 199   caacgtggacctcatcgacgcctccaac 226
             |||||||||||||||||||  |||||||
Sbjct: 65650 caacgtggacctcatcgaccgctccaac 65677
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>gb|BT021806.1| Bos taurus coronin, actin binding protein, 1B (CORO1B), mRNA,
           complete cds
          Length = 1865

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 225 acagggacgccgagaggctg 244
           ||||||||||||||||||||
Sbjct: 47  acagggacgccgagaggctg 28
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>dbj|AK110974.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-174-C02, full
           insert sequence
          Length = 1377

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 268 gttcaccgaccttaccaacgaggagttc 295
           |||||||||||| ||| |||||||||||
Sbjct: 337 gttcaccgacctcacccacgaggagttc 364
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>gb|AF184956.1|AF184956 Bacillus subtilis mycosubtilin operon, complete sequence
          Length = 46860

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 304   gtatatcggtggagccggtg 323
             ||||||||||||||||||||
Sbjct: 12997 gtatatcggtggagccggtg 13016
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>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 317     gccggtgctggtggtggtct 336
               ||||||||||||||||||||
Sbjct: 1271088 gccggtgctggtggtggtct 1271069
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>dbj|AP003759.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1567_G09
          Length = 121388

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 199   caacgtggacctcatcgacgcctccaac 226
             |||||||||||||||||||  |||||||
Sbjct: 17398 caacgtggacctcatcgaccgctccaac 17425
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>gb|AY110841.1| Zea mays CL908_1 mRNA sequence
          Length = 916

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 268 gttcaccgaccttaccaacgaggagttc 295
           |||||||||||| |||| ||||||||||
Sbjct: 23  gttcaccgacctcaccagcgaggagttc 50
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>emb|AL606620.3|OSJN00065 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0085F13,
              complete sequence
          Length = 130249

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 268    gttcaccgaccttaccaacgaggagttc 295
              |||||||||||| ||| |||||||||||
Sbjct: 101840 gttcaccgacctcacccacgaggagttc 101813
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>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica
          Length = 3272609

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 97      tgacctgctgatgctgggta 116
               ||||||||||||||||||||
Sbjct: 2354498 tgacctgctgatgctgggta 2354517
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 492    catgcggatgctgctgggcg 511
              ||||||||||||||||||||
Sbjct: 630755 catgcggatgctgctgggcg 630774


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,107,123
Number of Sequences: 3902068
Number of extensions: 3107123
Number of successful extensions: 69305
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68938
Number of HSP's gapped (non-prelim): 365
length of query: 530
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 507
effective length of database: 17,143,297,704
effective search space: 8691651935928
effective search space used: 8691651935928
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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