ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd23b03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 101 2e-18
2dbj|AP004801.3| Oryza sativa (japonica cultivar-group) genomic D... 101 2e-18
3gb|DQ078760.1| Zea mays clone Zmcoi6.3 cold-inducible unknown mRNA 92 2e-15
4ref|XM_752669.1| Ustilago maydis 521 hypothetical protein (UM016... 42 2.0
5gb|AC148178.35| Medicago truncatula clone mth2-5b21, complete se... 42 2.0
6gb|AC097634.2| Homo sapiens chromosome 3 clone RP11-154H23, comp... 42 2.0
7gb|AC105402.5| Homo sapiens BAC clone RP11-1415G13 from 2, compl... 42 2.0
8gb|AC105073.16| Mus musculus chromosome 1, clone RP23-288J11, co... 42 2.0
9dbj|AP004473.1| Lotus japonicus genomic DNA, chromosome 4, clone... 42 2.0
10gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence 40 7.9
11ref|XM_592406.2| PREDICTED: Bos taurus similar to Protein C16orf... 40 7.9
12ref|NM_015689.2| Homo sapiens DENN/MADD domain containing 2A (DE... 40 7.9
13gb|AY915791.1| Schistosoma japonicum SJCHGC09715 protein mRNA, c... 40 7.9
14gb|AC108870.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.9
15gb|AY223373.1| Schistosoma japonicum clone ZZZ23 mRNA sequence 40 7.9
16gb|AC073264.5| Homo sapiens BAC clone RP11-298A10 from 7, comple... 40 7.9
17gb|BC115004.1| Homo sapiens cDNA clone MGC:131568 IMAGE:7470138,... 40 7.9
18emb|AL731537.8| Human DNA sequence from clone RP11-96B5 on chrom... 40 7.9
19emb|AL662906.4| Human DNA sequence from clone RP11-111I12 on chr... 40 7.9
20gb|AF417589.1| Streptococcus mitis ATCC 49456 GroES gene, comple... 40 7.9
21ref|XM_795372.1| PREDICTED: Strongylocentrotus purpuratus hypoth... 40 7.9
22emb|BX640447.1| Bordetella bronchiseptica strain RB50, complete ... 40 7.9
23emb|BX640428.1| Bordetella parapertussis strain 12822, complete ... 40 7.9
24emb|BX640413.1| Bordetella pertussis strain Tohama I, complete g... 40 7.9
25gb|AC117385.3| Homo sapiens 3 BAC RP11-13I22 (Roswell Park Cance... 40 7.9
26gb|U55211.1|CAU55211 Carassius auratus L1-like cell adhesion mol... 40 7.9
27dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
28gb|AE009618.1| Brucella melitensis 16M chromosome I, section 175... 40 7.9
29dbj|AB033103.2| Homo sapiens mRNA for KIAA1277 protein, partial cds 40 7.9
30gb|AC006452.5| Homo sapiens PAC clone RP4-592P3 from 7, complete... 40 7.9
31gb|AC002504.1| Homo sapiens X PAC RP1-258N20 (Roswell Park Cance... 40 7.9
32gb|DQ020487.1| Sus scrofa clone BAC KNP_375G9, complete sequence 40 7.9
33gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I... 40 7.9
34gb|AY811513.1| Schistosoma japonicum clone SJCHGC01174 unknown mRNA 40 7.9
35gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 7.9
36emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I,... 40 7.9
37emb|AJ343141.1|HSA343141 Homo sapiens genomic sequence surroundi... 40 7.9
38emb|AJ343801.1|HSA343801 Homo sapiens genomic sequence surroundi... 40 7.9
39emb|AJ343785.1|HSA343785 Homo sapiens genomic sequence surroundi... 40 7.9
40emb|AJ343756.1|HSA343756 Homo sapiens genomic sequence surroundi... 40 7.9
41emb|AJ343733.1|HSA343733 Homo sapiens genomic sequence surroundi... 40 7.9
42emb|AJ343723.1|HSA343723 Homo sapiens genomic sequence surroundi... 40 7.9 
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  101 bits (51), Expect = 2e-18
 Identities = 60/63 (95%)
 Strand = Plus / Plus

                                                                           
Query: 102     ggtttgcctgtcacaattggtcttgctgcagctactggtttgggaatacttgcctacgca 161
               ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||
Sbjct: 8873570 ggtttgcctgtcacacttgggcttgctgcagctactggtttgggaatacttgcctacaca 8873629

                  
Query: 162     gag 164
               |||
Sbjct: 8873630 gag 8873632



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 73/84 (86%)
 Strand = Plus / Plus

                                                                           
Query: 238     aggaccgaaagaagaccctgcaacagattgatgacttctttaacaagaagattgcaccaa 297
               ||||||||||||  |||||  ||||||| ||||| ||||| ||||| ||| |||| ||||
Sbjct: 8873874 aggaccgaaagagaacccttaaacagatcgatgatttcttcaacaaaaaggttgctccaa 8873933

                                       
Query: 298     aggagcttgttgatgaaattaagg 321
               ||||||||||||||||||| ||||
Sbjct: 8873934 aggagcttgttgatgaaataaagg 8873957



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 66/78 (84%)
 Strand = Plus / Plus

                                                                           
Query: 163     agatagaaaccgtgctgcagtttctgggttcagctgccattgtccaggttgtggcaagca 222
               ||||||| || ||||| |||||| |||| |||||||||||||||||| | || |||||||
Sbjct: 8873716 agatagagactgtgcttcagtttttggggtcagctgccattgtccagctagttgcaagca 8873775

                                 
Query: 223     agctcgtctatgccgagg 240
               | ||| | ||||| ||||
Sbjct: 8873776 aactcatatatgctgagg 8873793



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                            
Query: 20      gcagagcagtgatcttccctggattgctcccaagaagggattcag 64
               ||||||||||  |||||||||||  ||||||||||||||||||||
Sbjct: 8873342 gcagagcagtagtcttccctggacagctcccaagaagggattcag 8873386
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>dbj|AP004801.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0613F08
          Length = 142937

 Score =  101 bits (51), Expect = 2e-18
 Identities = 60/63 (95%)
 Strand = Plus / Plus

                                                                         
Query: 102   ggtttgcctgtcacaattggtcttgctgcagctactggtttgggaatacttgcctacgca 161
             ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||
Sbjct: 78588 ggtttgcctgtcacacttgggcttgctgcagctactggtttgggaatacttgcctacaca 78647

                
Query: 162   gag 164
             |||
Sbjct: 78648 gag 78650



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 73/84 (86%)
 Strand = Plus / Plus

                                                                         
Query: 238   aggaccgaaagaagaccctgcaacagattgatgacttctttaacaagaagattgcaccaa 297
             ||||||||||||  |||||  ||||||| ||||| ||||| ||||| ||| |||| ||||
Sbjct: 78892 aggaccgaaagagaacccttaaacagatcgatgatttcttcaacaaaaaggttgctccaa 78951

                                     
Query: 298   aggagcttgttgatgaaattaagg 321
             ||||||||||||||||||| ||||
Sbjct: 78952 aggagcttgttgatgaaataaagg 78975



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 66/78 (84%)
 Strand = Plus / Plus

                                                                         
Query: 163   agatagaaaccgtgctgcagtttctgggttcagctgccattgtccaggttgtggcaagca 222
             ||||||| || ||||| |||||| |||| |||||||||||||||||| | || |||||||
Sbjct: 78734 agatagagactgtgcttcagtttttggggtcagctgccattgtccagctagttgcaagca 78793

                               
Query: 223   agctcgtctatgccgagg 240
             | ||| | ||||| ||||
Sbjct: 78794 aactcatatatgctgagg 78811



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                          
Query: 20    gcagagcagtgatcttccctggattgctcccaagaagggattcag 64
             ||||||||||  |||||||||||  ||||||||||||||||||||
Sbjct: 78360 gcagagcagtagtcttccctggacagctcccaagaagggattcag 78404
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>gb|DQ078760.1| Zea mays clone Zmcoi6.3 cold-inducible unknown mRNA
          Length = 321

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 112/134 (83%)
 Strand = Plus / Plus

                                                                       
Query: 15  ggatggcagagcagtgatcttccctggattgctcccaagaagggattcagtttggacttc 74
           |||||| |||||||| | ||||||||||  |||||    || |||||||| || ||||| 
Sbjct: 188 ggatggaagagcagtaaccttccctggaaggctccgccaaaaggattcagctttgacttg 247

                                                                       
Query: 75  ggtgagctatttggggatggttctcaaggtttgcctgtcacaattggtcttgctgcagct 134
           || ||  ||||||||||||||||  | ||||||||||  ||||||||||| |||||||||
Sbjct: 248 ggcgaattatttggggatggttcagatggtttgcctgcgacaattggtctcgctgcagct 307

                         
Query: 135 actggtttgggaat 148
           ||||||||||||||
Sbjct: 308 actggtttgggaat 321
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>ref|XM_752669.1| Ustilago maydis 521 hypothetical protein (UM01615.1) partial mRNA
          Length = 1710

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 482  cccagctgcagaagccagcac 502
            |||||||||||||||||||||
Sbjct: 1257 cccagctgcagaagccagcac 1277
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>gb|AC148178.35| Medicago truncatula clone mth2-5b21, complete sequence
          Length = 115185

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 266   tgatgacttctttaacaagaagatt 290
             ||||||||||||||| |||||||||
Sbjct: 38139 tgatgacttctttaagaagaagatt 38115
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>gb|AC097634.2| Homo sapiens chromosome 3 clone RP11-154H23, complete sequence
          Length = 193553

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 127    ctgcagctactggtttgggaatact 151
              ||||||||||||||||| |||||||
Sbjct: 160304 ctgcagctactggtttgagaatact 160280
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>gb|AC105402.5| Homo sapiens BAC clone RP11-1415G13 from 2, complete sequence
          Length = 65449

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 473   accagcagccccagctgcaga 493
             |||||||||||||||||||||
Sbjct: 17324 accagcagccccagctgcaga 17304
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>gb|AC105073.16| Mus musculus chromosome 1, clone RP23-288J11, complete sequence
          Length = 210509

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 194    agctgccattgtccaggttgt 214
              |||||||||||||||||||||
Sbjct: 108400 agctgccattgtccaggttgt 108380
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>dbj|AP004473.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT10J15, TM0007,
             complete sequence
          Length = 92741

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 69    gacttcggtgagctatttggg 89
             |||||||||||||||||||||
Sbjct: 72931 gacttcggtgagctatttggg 72911
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>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence
          Length = 2107794

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 540    tcaccatttgcaaattatcc 559
              ||||||||||||||||||||
Sbjct: 106506 tcaccatttgcaaattatcc 106487
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>ref|XM_592406.2| PREDICTED: Bos taurus similar to Protein C16orf7 homolog (5-day
            ovary-specific transcript 1 protein) (LOC514538), mRNA
          Length = 2488

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 469  cagaaccagcagccccagct 488
            ||||||||||||||||||||
Sbjct: 1587 cagaaccagcagccccagct 1568
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>ref|NM_015689.2| Homo sapiens DENN/MADD domain containing 2A (DENND2A), mRNA
          Length = 3737

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 482 cccagctgcagaagccagca 501
           ||||||||||||||||||||
Sbjct: 454 cccagctgcagaagccagca 473
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>gb|AY915791.1| Schistosoma japonicum SJCHGC09715 protein mRNA, complete cds
          Length = 1030

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 458 tgcaccagtagcagaaccag 477
           ||||||||||||||||||||
Sbjct: 804 tgcaccagtagcagaaccag 785
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>gb|AC108870.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone P0682E05,
              complete sequence
          Length = 162223

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 473    accagcagccccagctgcag 492
              ||||||||||||||||||||
Sbjct: 104665 accagcagccccagctgcag 104684
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>gb|AY223373.1| Schistosoma japonicum clone ZZZ23 mRNA sequence
          Length = 838

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 458 tgcaccagtagcagaaccag 477
           ||||||||||||||||||||
Sbjct: 579 tgcaccagtagcagaaccag 560
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>gb|AC073264.5| Homo sapiens BAC clone RP11-298A10 from 7, complete sequence
          Length = 200123

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 483   ccagctgcagaagccagcac 502
             ||||||||||||||||||||
Sbjct: 46523 ccagctgcagaagccagcac 46504
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>gb|BC115004.1| Homo sapiens cDNA clone MGC:131568 IMAGE:7470138, complete cds
          Length = 3762

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 482 cccagctgcagaagccagca 501
           ||||||||||||||||||||
Sbjct: 364 cccagctgcagaagccagca 383
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>emb|AL731537.8| Human DNA sequence from clone RP11-96B5 on chromosome 10 Contains a novel
              pseudogene, the 5' end of the PRKG1 gene for protein kinase
              cGMP-dependent type I, a novel gene and two CpG islands,
              complete sequence
          Length = 189082

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 59     attcagtttggacttcggtgagct 82
              |||||||| |||||||||||||||
Sbjct: 185455 attcagttgggacttcggtgagct 185478
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>emb|AL662906.4| Human DNA sequence from clone RP11-111I12 on chromosome 1 Contains a
             novel gene, complete sequence
          Length = 134028

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 126   gctgcagctactggtttggg 145
             ||||||||||||||||||||
Sbjct: 75510 gctgcagctactggtttggg 75529
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>gb|AF417589.1| Streptococcus mitis ATCC 49456 GroES gene, complete cds; and GroEL
            gene, partial cds
          Length = 1974

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 469  cagaaccagcagccccagct 488
            ||||||||||||||||||||
Sbjct: 1937 cagaaccagcagccccagct 1956
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>ref|XM_795372.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein
           LOC587579 (LOC587579), mRNA
          Length = 411

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 462 ccagtagcagaaccagcagc 481
           ||||||||||||||||||||
Sbjct: 127 ccagtagcagaaccagcagc 146
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>emb|BX640447.1| Bordetella bronchiseptica strain RB50, complete genome; segment 11/16
          Length = 349442

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 253    ccctgcaacagattgatgac 272
              ||||||||||||||||||||
Sbjct: 213706 ccctgcaacagattgatgac 213725
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>emb|BX640428.1| Bordetella parapertussis strain 12822, complete genome; segment 6/14
          Length = 348525

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 253   ccctgcaacagattgatgac 272
             ||||||||||||||||||||
Sbjct: 24578 ccctgcaacagattgatgac 24559
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>emb|BX640413.1| Bordetella pertussis strain Tohama I, complete genome; segment 3/12
          Length = 349028

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 253    ccctgcaacagattgatgac 272
              ||||||||||||||||||||
Sbjct: 311554 ccctgcaacagattgatgac 311535
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>gb|AC117385.3| Homo sapiens 3 BAC RP11-13I22 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 168186

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                             
Query: 468   gcagaaccagcagccccagctgcagaagccag 499
             ||||||||| ||||||||||| ||||||||||
Sbjct: 27492 gcagaaccaccagccccagct-cagaagccag 27462
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>gb|U55211.1|CAU55211 Carassius auratus L1-like cell adhesion molecule antigen E587 mRNA,
           complete cds
          Length = 3801

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 481 ccccagctgcagaagccagc 500
           ||||||||||||||||||||
Sbjct: 625 ccccagctgcagaagccagc 644
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 473      accagcagccccagctgcag 492
                ||||||||||||||||||||
Sbjct: 25614618 accagcagccccagctgcag 25614637
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>gb|AE009618.1| Brucella melitensis 16M chromosome I, section 175 of 195 of the
            complete sequence
          Length = 11869

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 540  tcaccatttgcaaattatcc 559
            ||||||||||||||||||||
Sbjct: 5383 tcaccatttgcaaattatcc 5402
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>dbj|AB033103.2| Homo sapiens mRNA for KIAA1277 protein, partial cds
          Length = 3737

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 482 cccagctgcagaagccagca 501
           ||||||||||||||||||||
Sbjct: 454 cccagctgcagaagccagca 473
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>gb|AC006452.5| Homo sapiens PAC clone RP4-592P3 from 7, complete sequence
          Length = 121705

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 482   cccagctgcagaagccagca 501
             ||||||||||||||||||||
Sbjct: 40632 cccagctgcagaagccagca 40613
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>gb|AC002504.1| Homo sapiens X PAC RP1-258N20 (Roswell Park Cancer Institute Human PAC
             Library) complete sequence
          Length = 134970

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 81    ctatttggggatggttctcaaggt 104
             ||||||||||||||||||| ||||
Sbjct: 15382 ctatttggggatggttctctaggt 15359
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>gb|DQ020487.1| Sus scrofa clone BAC KNP_375G9, complete sequence
          Length = 142071

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 327    gggcaggctctcctgccttc 346
              ||||||||||||||||||||
Sbjct: 133278 gggcaggctctcctgccttc 133297
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>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence
          Length = 2124241

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 540    tcaccatttgcaaattatcc 559
              ||||||||||||||||||||
Sbjct: 107864 tcaccatttgcaaattatcc 107845
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>gb|AY811513.1| Schistosoma japonicum clone SJCHGC01174 unknown mRNA
          Length = 575

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 458 tgcaccagtagcagaaccag 477
           ||||||||||||||||||||
Sbjct: 437 tgcaccagtagcagaaccag 418
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 473      accagcagccccagctgcag 492
                ||||||||||||||||||||
Sbjct: 25933288 accagcagccccagctgcag 25933307
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>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence,
              strain 2308
          Length = 2121359

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 540    tcaccatttgcaaattatcc 559
              ||||||||||||||||||||
Sbjct: 104232 tcaccatttgcaaattatcc 104213
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>emb|AJ343141.1|HSA343141 Homo sapiens genomic sequence surrounding NotI site, clone
           NR1-PH23RS
          Length = 576

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 126 gctgcagctactggtttggg 145
           ||||||||||||||||||||
Sbjct: 27  gctgcagctactggtttggg 8
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>emb|AJ343801.1|HSA343801 Homo sapiens genomic sequence surrounding NotI site, clone
           NR1-PB4RS
          Length = 753

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 126 gctgcagctactggtttggg 145
           ||||||||||||||||||||
Sbjct: 27  gctgcagctactggtttggg 8
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>emb|AJ343785.1|HSA343785 Homo sapiens genomic sequence surrounding NotI site, clone
           NR5-DB3RS
          Length = 798

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 126 gctgcagctactggtttggg 145
           ||||||||||||||||||||
Sbjct: 27  gctgcagctactggtttggg 8
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>emb|AJ343756.1|HSA343756 Homo sapiens genomic sequence surrounding NotI site, clone
           NR1-WP19R
          Length = 715

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 126 gctgcagctactggtttggg 145
           ||||||||||||||||||||
Sbjct: 27  gctgcagctactggtttggg 8
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>emb|AJ343733.1|HSA343733 Homo sapiens genomic sequence surrounding NotI site, clone
           NR5-IM14RS
          Length = 722

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 126 gctgcagctactggtttggg 145
           ||||||||||||||||||||
Sbjct: 27  gctgcagctactggtttggg 8
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>emb|AJ343723.1|HSA343723 Homo sapiens genomic sequence surrounding NotI site, clone
           NR5-IP21R
          Length = 634

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 126 gctgcagctactggtttggg 145
           ||||||||||||||||||||
Sbjct: 27  gctgcagctactggtttggg 8


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,820,576
Number of Sequences: 3902068
Number of extensions: 4820576
Number of successful extensions: 95990
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 95842
Number of HSP's gapped (non-prelim): 149
length of query: 579
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 556
effective length of database: 17,143,297,704
effective search space: 9531673523424
effective search space used: 9531673523424
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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