ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd23a24 |
|---|---|
| Clone Library Name | barley_pub |
>TOC34_ARATH (Q38906) Translocase of chloroplast 34 (EC 3.6.5.-) (34 kDa| chloroplast outer envelope protein) (GTP-binding protein OEP34) (AtToc34) Length = 313 Score = 202 bits (513), Expect = 9e-52 Identities = 94/177 (53%), Positives = 129/177 (72%) Frame = +1 Query: 4 LDTYRMDTLDEQVIRAITSSLGKAIWRRTLVVLTHAQLSPPDGIDYNDFLARRSESLVRY 183 LD YR+D LD QV+ AIT + GK IW+++ +VLTHAQ SPPDG++YN F+++RS +L++ Sbjct: 128 LDVYRVDDLDRQVVGAITDAFGKEIWKKSALVLTHAQFSPPDGLNYNHFVSKRSNALLKV 187 Query: 184 IRSGAGIGKREYADFPLPIALAENSGRCKTNENGAKILPDGTPWIPNLMKEITIVVSNGS 363 I++GA + K++ F +P+ L ENSGRC NE+ KILP GT WIPNL +IT + NG+ Sbjct: 188 IQTGAQLKKQDLQGFSIPVILVENSGRCHKNESDEKILPCGTSWIPNLFNKITEISFNGN 247 Query: 364 RSIHVDQKLIDGPNPNNRWKKYIPLILAVQYFFVVKGIRRAIHSDISNGKLDDWEQR 534 ++IHVD+KL++GPNPN R KK IPL+ A QY V+K + RAI SD+S WE R Sbjct: 248 KAIHVDKKLVEGPNPNERGKKLIPLMFAFQYLLVMKPLVRAIKSDVSRESKLAWELR 304
>TOC34_PEA (Q41009) Translocase of chloroplast 34 (EC 3.6.5.-) (34 kDa| chloroplast outer envelope protein) (GTP-binding protein OEP34) (GTP-binding protein IAP34) Length = 310 Score = 187 bits (474), Expect = 3e-47 Identities = 91/177 (51%), Positives = 120/177 (67%) Frame = +1 Query: 4 LDTYRMDTLDEQVIRAITSSLGKAIWRRTLVVLTHAQLSPPDGIDYNDFLARRSESLVRY 183 LD YR+D LD+ V +AIT S GK IW + +V LTHAQ SPPDG+ Y++F ++RSE+L++ Sbjct: 129 LDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSKRSEALLQV 188 Query: 184 IRSGAGIGKREYADFPLPIALAENSGRCKTNENGAKILPDGTPWIPNLMKEITIVVSNGS 363 +RSGA + K A +P+ L ENSGRC N++ K+LP+G WIP+L++ IT V N S Sbjct: 189 VRSGASLKKDAQAS-DIPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTITEVALNKS 247 Query: 364 RSIHVDQKLIDGPNPNNRWKKYIPLILAVQYFFVVKGIRRAIHSDISNGKLDDWEQR 534 SI VD+ LIDGPNPN R K +IPLI A+QY F+ K I I DI+ WE R Sbjct: 248 ESIFVDKNLIDGPNPNQRGKLWIPLIFALQYLFLAKPIEALIRRDIATETKPAWETR 304
>MRAY_HAHCH (Q2S9Y9) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC| 2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase) Length = 360 Score = 31.2 bits (69), Expect = 2.8 Identities = 16/38 (42%), Positives = 23/38 (60%) Frame = -1 Query: 437 RGMYFFQRLFGFGPSINF*ST*MDLLPFETTIVISFIK 324 R YF+Q +FGFG ++ T LP ETT+++ F K Sbjct: 131 RWKYFWQSVFGFGAAVLLFKT--AHLPQETTLIVPFFK 166
>CSMD3_HUMAN (Q7Z407) CUB and sushi domain-containing protein 3 precursor (CUB and| sushi multiple domains protein 3) Length = 3670 Score = 30.8 bits (68), Expect = 3.6 Identities = 16/37 (43%), Positives = 22/37 (59%) Frame = +1 Query: 205 GKREYADFPLPIALAENSGRCKTNENGAKILPDGTPW 315 G+R D+PLP +AE GR K E+ +IL G P+ Sbjct: 1361 GERRAWDYPLPSCIAECGGRFK-GESSGRILSPGYPF 1396
>CSMD3_MOUSE (Q80T79) CUB and sushi domain-containing protein 3 (CUB and sushi| multiple domains protein 3) (Fragment) Length = 2796 Score = 30.8 bits (68), Expect = 3.6 Identities = 16/37 (43%), Positives = 22/37 (59%) Frame = +1 Query: 205 GKREYADFPLPIALAENSGRCKTNENGAKILPDGTPW 315 G+R D+PLP +AE GR K E+ +IL G P+ Sbjct: 557 GERRAWDYPLPSCIAECGGRFK-GESSGRILSPGYPF 592
>HMDH2_GOSHI (O64967) 3-hydroxy-3-methylglutaryl-coenzyme A reductase 2 (EC| 1.1.1.34) (HMG-CoA reductase 2) Length = 628 Score = 30.4 bits (67), Expect = 4.7 Identities = 33/105 (31%), Positives = 44/105 (41%), Gaps = 23/105 (21%) Frame = +1 Query: 31 DEQVIRAIT----------SSLGK-----AIWRRTLVVLTHAQLS--PPDGIDYNDFLAR 159 DE++I+++ S LG AI R L LT LS P DG DY L + Sbjct: 214 DEEIIKSVVAGTLPSYSLESKLGDCKRAAAIRREALQRLTGRSLSGLPLDGFDYESILGQ 273 Query: 160 RSESLVRYIRSGAGI------GKREYADFPLPIALAENSGRCKTN 276 E V Y++ GI REY+ +P+A E TN Sbjct: 274 CCEMPVGYVQIPVGIAGPLLLNGREYS---VPMATTEGCLVASTN 315
>HMDH_CAMAC (P48021) 3-hydroxy-3-methylglutaryl-coenzyme A reductase (EC| 1.1.1.34) (HMG-CoA reductase) Length = 593 Score = 30.0 bits (66), Expect = 6.2 Identities = 32/112 (28%), Positives = 45/112 (40%), Gaps = 20/112 (17%) Frame = +1 Query: 31 DEQVIR----------AITSSLGK-----AIWRRTLVVLTHAQLS--PPDGIDYNDFLAR 159 DE++I+ A+ S LG AI R L +T L+ P DG DY+ L + Sbjct: 179 DEEIIKSVVEGTTPSYALESKLGDSHRAAAIRREALQRMTKKSLAGLPLDGFDYDSILGQ 238 Query: 160 RSESLVRYIRSGAGIGKREYAD---FPLPIALAENSGRCKTNENGAKILPDG 306 E V Y++ GI D + +P+A E TN I G Sbjct: 239 CCEMPVGYVQIPVGIAGPLLLDGREYSVPMATTEGCLVASTNRGCKAIFACG 290
>ENK17_HUMAN (P61570) HERV-K_11q22.1 provirus ancestral Env polyprotein| precursor (Envelope polyprotein) [Contains: Surface protein (SU); Transmembrane protein (TM)] Length = 661 Score = 30.0 bits (66), Expect = 6.2 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 8/102 (7%) Frame = +1 Query: 313 WIPNLMKEITIVVSNGSRSIHVDQKLIDGPNPNNRWKKYIPLILAVQYFFV-------VK 471 WIP M S SIH+ +++ G NR K++I ++AV + V Sbjct: 434 WIPVSMDRPW----EASPSIHILTEVLKGVL--NRSKRFIFTLIAVIMGLIAVTATGAVA 487 Query: 472 GIRRAIHSDISNGK-LDDWEQRYRDLVGSGNPVDQKVSSSRN 594 G+ A+HS + + ++DW++ L S + +DQK+++ N Sbjct: 488 GV--ALHSSVQSVNFVNDWQKNSTRLWNSQSSIDQKLANQIN 527
>TREA_YEAST (P32356) Neutral trehalase (EC 3.2.1.28) (Alpha,alpha-trehalase)| (Alpha,alpha-trehalose glucohydrolase) Length = 751 Score = 30.0 bits (66), Expect = 6.2 Identities = 17/43 (39%), Positives = 25/43 (58%) Frame = +1 Query: 304 GTPWIPNLMKEITIVVSNGSRSIHVDQKLIDGPNPNNRWKKYI 432 GT + NL++E+TI S G I +D+ I+ NP NR + I Sbjct: 148 GTYMLSNLLQELTIAKSFGRHQIFLDEARIN-ENPVNRLSRLI 189
>TREB_YEAST (P35172) Probable trehalase (EC 3.2.1.28) (Alpha,alpha-trehalase)| (Alpha,alpha-trehalose glucohydrolase) Length = 780 Score = 30.0 bits (66), Expect = 6.2 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Frame = +1 Query: 274 NENGAK-ILPDGTPWIPNLMKEITIVVSNGSRSIHVDQKLIDGPNPNNRWKKYI 432 N NG K + GT + NL++E+TI S G I +D+ I+ NP +R + I Sbjct: 166 NSNGFKHVNVRGTYMLSNLLQELTIAKSFGRHQIFLDEARIN-ENPVDRLSRLI 218
>ENK12_HUMAN (P61567) HERV-K_1q22 provirus ancestral Env polyprotein (Envelope| polyprotein) (HERV-K102 envelope protein) (HERV-K(III) envelope protein) [Contains: Surface protein (SU); Transmembrane protein (TM)] Length = 588 Score = 29.6 bits (65), Expect = 8.0 Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 8/102 (7%) Frame = +1 Query: 313 WIPNLMKEITIVVSNGSRSIHVDQKLIDGPNPNNRWKKYIPLILAVQYFFV-------VK 471 WIP M S S+H+ +++ G NR K++I ++AV + V Sbjct: 323 WIPVSMDRPW----EASPSVHILTEVLKGVL--NRSKRFIFTLIAVIMGLIAVTATAAVA 376 Query: 472 GIRRAIHSDISNGK-LDDWEQRYRDLVGSGNPVDQKVSSSRN 594 G+ A+HS + + ++DW++ L S + +DQK+++ N Sbjct: 377 GV--ALHSSVQSVNFVNDWQKNSTRLWNSQSSIDQKLANQIN 416
>ENK10_HUMAN (P10267) HERV-K_5q33.3 provirus ancestral Env polyprotein (Envelope| polyprotein) (HERV-K10 envelope protein) (HERV-K107 envelope protein) [Contains: Surface protein (SU); Transmembrane protein (TM)] Length = 587 Score = 29.6 bits (65), Expect = 8.0 Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 8/102 (7%) Frame = +1 Query: 313 WIPNLMKEITIVVSNGSRSIHVDQKLIDGPNPNNRWKKYIPLILAVQYFFV-------VK 471 WIP M S S+H+ +++ G NR K++I ++AV + V Sbjct: 322 WIPVSMDRPW----EASPSVHILTEVLKGVL--NRSKRFIFTLIAVIMGLIAVTATAAVA 375 Query: 472 GIRRAIHSDISNGK-LDDWEQRYRDLVGSGNPVDQKVSSSRN 594 G+ A+HS + + ++DW++ L S + +DQK+++ N Sbjct: 376 GV--ALHSSVQSVNFVNDWQKNSTRLWNSQSSIDQKLANQIN 415
>MTNP_LEPIN (Q8CXR2) Probable 5'-methylthioadenosine phosphorylase (EC| 2.4.2.28) (MTA phosphorylase) Length = 287 Score = 29.6 bits (65), Expect = 8.0 Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 8/104 (7%) Frame = +1 Query: 115 LSPPDGIDYNDFLARRS---ESLVRYIRSGAGIGKREYADFPLPIALAENSGRCKTNENG 285 LSPP+ ++ + A + E +V + G+ + + DF LP + + + + G Sbjct: 62 LSPPEVPNHANICALKQLGVEEIVAFSSVGSLREEIKPLDFVLPSQIIDRTRFRNSTYFG 121 Query: 286 AKIL---PDGTPWIPNLMKEITIVVSNGSRSIHVDQKLI--DGP 402 ++ P P+ PNL K I IH+D+ L+ +GP Sbjct: 122 NGVVAHAPFAEPFSPNLSKRIAQTAKKIGLEIHLDKTLVCMEGP 165
>MTNP_LEPIC (Q72LZ4) Probable 5'-methylthioadenosine phosphorylase (EC| 2.4.2.28) (MTA phosphorylase) Length = 287 Score = 29.6 bits (65), Expect = 8.0 Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 8/104 (7%) Frame = +1 Query: 115 LSPPDGIDYNDFLARRS---ESLVRYIRSGAGIGKREYADFPLPIALAENSGRCKTNENG 285 LSPP+ ++ + A + E +V + G+ + + DF LP + + + + G Sbjct: 62 LSPPEVPNHANICALKQLGVEEIVAFSSVGSLREEIKPLDFVLPSQIIDRTRFRNSTYFG 121 Query: 286 AKIL---PDGTPWIPNLMKEITIVVSNGSRSIHVDQKLI--DGP 402 ++ P P+ PNL K I IH+D+ L+ +GP Sbjct: 122 NGVVAHAPFAEPFSPNLSKRIAQTAKKIGLEIHLDKTLVCMEGP 165
>MTHR1_YEAST (P46151) Methylenetetrahydrofolate reductase 1 (EC 1.5.1.20)| Length = 657 Score = 29.6 bits (65), Expect = 8.0 Identities = 10/29 (34%), Positives = 17/29 (58%) Frame = -2 Query: 148 NHYSRFHQVGRVGHGSIQPRFFSKWPSQV 62 N Y FH+ ++ H SI P S++P ++ Sbjct: 222 NSYLLFHRAAKLSHASIPPAILSRFPPEI 250
>POK12_HUMAN (P63135) HERV-K_1q22 provirus ancestral Pol protein (HERV-K102 Pol| protein) (HERV-K(III) Pol protein) [Includes: Reverse transcriptase (RT) (EC 2.7.7.49); Ribonuclease H (EC 3.1.26.4) (RNase H); Integrase (IN)] Length = 1459 Score = 29.6 bits (65), Expect = 8.0 Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 8/102 (7%) Frame = +1 Query: 313 WIPNLMKEITIVVSNGSRSIHVDQKLIDGPNPNNRWKKYIPLILAVQYFFV-------VK 471 WIP M S S+H+ +++ G NR K++I ++AV + V Sbjct: 1194 WIPVSMDRPW----EASPSVHILTEVLKGVL--NRSKRFIFTLIAVIMGLIAVTATAAVA 1247 Query: 472 GIRRAIHSDISNGK-LDDWEQRYRDLVGSGNPVDQKVSSSRN 594 G+ A+HS + + ++DW++ L S + +DQK+++ N Sbjct: 1248 GV--ALHSSVQSVNFVNDWQKNSTRLWNSQSSIDQKLANQIN 1287
>QUEA_AZOSE (Q5P721) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC| 5.-.-.-) (Queuosine biosynthesis protein queA) Length = 345 Score = 29.6 bits (65), Expect = 8.0 Identities = 15/22 (68%), Positives = 16/22 (72%) Frame = -2 Query: 613 GPLRP*GCGMTKLFGLPGYRFQ 548 GPL G G T+LF LPGYRFQ Sbjct: 266 GPLEA-GTGETELFILPGYRFQ 286
>ENK2_HUMAN (Q69384) HERV-K_7p22.1 provirus ancestral Env polyprotein precursor| (Envelope polyprotein) (HERV-K(HML-2.HOM) envelope protein) (HERV-K108 envelope protein) (HERV-K(C7) envelope protein) (EnvK2 protein) [Contains: Surface protein (SU); Transme Length = 699 Score = 29.6 bits (65), Expect = 8.0 Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 8/102 (7%) Frame = +1 Query: 313 WIPNLMKEITIVVSNGSRSIHVDQKLIDGPNPNNRWKKYIPLILAVQYFFV-------VK 471 WIP M S S+H+ +++ G NR K++I ++AV + V Sbjct: 434 WIPVSMDRPW----EASPSVHILTEVLKGVL--NRSKRFIFTLIAVIMGLIAVTATAAVA 487 Query: 472 GIRRAIHSDISNGK-LDDWEQRYRDLVGSGNPVDQKVSSSRN 594 G+ A+HS + + ++DW++ L S + +DQK+++ N Sbjct: 488 GV--ALHSSVQSVNFVNDWQKNSTRLWNSQSSIDQKLANQIN 527 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 103,521,312 Number of Sequences: 219361 Number of extensions: 2357272 Number of successful extensions: 6227 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 6050 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6225 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6086476506 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
