ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd23a19 |
|---|---|
| Clone Library Name | barley_pub |
>GPAT6_ARATH (O80437) Glycerol-3-phosphate acyltransferase 6 (EC 2.3.1.15)| (AtGPAT6) Length = 501 Score = 197 bits (500), Expect = 2e-50 Identities = 93/155 (60%), Positives = 117/155 (75%) Frame = +3 Query: 27 KFKPVEDCSSEGRSEQTVAADFDGTLLRSSNAFPYYLLVALEAGXXXXXXXXXXXXPFVY 206 +F+ + C + RS TVAAD DGTLL S +AFPYY LVALEAG PFVY Sbjct: 9 RFEQISKCDVKDRSNHTVAADLDGTLLISRSAFPYYFLVALEAGSLLRALILLVSVPFVY 68 Query: 207 VTYIFFSESLAISTLVYISVAGLKVRSIEMAARSVLPKFYAQDVHPESWRVFRSFGKRYI 386 +TY+ SE+LAI+ V+I+ AGLK+R +E+ RSVLP+FYA+DV P++WR+F +FGKRYI Sbjct: 69 LTYLTISETLAINVFVFITFAGLKIRDVELVVRSVLPRFYAEDVRPDTWRIFNTFGKRYI 128 Query: 387 ITASPRIMVEPFAREFLGADRVVGTELEVGKSGKA 491 ITASPRIMVEPF + FLG D+V+GTELEV KSG+A Sbjct: 129 ITASPRIMVEPFVKTFLGVDKVLGTELEVSKSGRA 163
>GPAT8_ARATH (Q5XF03) Probable glycerol-3-phosphate acyltransferase 8 (EC| 2.3.1.15) Length = 500 Score = 147 bits (370), Expect = 2e-35 Identities = 71/151 (47%), Positives = 106/151 (70%) Frame = +3 Query: 21 SLKFKPVEDCSSEGRSEQTVAADFDGTLLRSSNAFPYYLLVALEAGXXXXXXXXXXXXPF 200 S F P+ +C +G + ++AAD DGTLL S ++FPY++LVA+EAG PF Sbjct: 7 SQNFPPITECR-DGEYD-SIAADLDGTLLLSRSSFPYFMLVAVEAGSLLRGLILLLSLPF 64 Query: 201 VYVTYIFFSESLAISTLVYISVAGLKVRSIEMAARSVLPKFYAQDVHPESWRVFRSFGKR 380 V ++Y+F SESL I L++IS AGLK+R IE+ +R+VLP+FYA DV +S+ VF ++ Sbjct: 65 VIISYLFVSESLGIQILIFISFAGLKIRDIELVSRAVLPRFYAADVRKDSFEVFDKCKRK 124 Query: 381 YIITASPRIMVEPFAREFLGADRVVGTELEV 473 ++TA+P +MVE F +++LG D+V+GTE+EV Sbjct: 125 VVVTANPIVMVEAFVKDYLGGDKVLGTEIEV 155
>GPAT4_ARATH (Q9LMM0) Glycerol-3-phosphate acyltransferase 4 (EC 2.3.1.15)| (AtGPAT4) Length = 503 Score = 146 bits (368), Expect = 3e-35 Identities = 72/155 (46%), Positives = 105/155 (67%), Gaps = 1/155 (0%) Frame = +3 Query: 12 AMASLKFKPVEDCSSEGRSEQTVAADFDGTLLRSSNAFPYYLLVALEAGXXXXXXXXXXX 191 A S F P+ +C S R ++AAD DGTLL S ++FPY++LVA+EAG Sbjct: 4 AKKSRSFPPISECKS--REYDSIAADLDGTLLLSRSSFPYFMLVAIEAGSLFRGLILLLS 61 Query: 192 XPFVYVTYIFFSESLAISTLVYISVAGLKVRSIEMAARSVLPKFYAQDVHPESWRVFRSF 371 P V + Y+F SESL I L++IS AG+K+++IE+ +R+VL +FYA DV +S+ VF Sbjct: 62 LPIVIIAYLFVSESLGIQILIFISFAGIKIKNIELVSRAVLTRFYAADVRKDSFEVFDKC 121 Query: 372 GKR-YIITASPRIMVEPFAREFLGADRVVGTELEV 473 KR ++TA+P +MVEPF +++LG D+V+GTE+EV Sbjct: 122 KKRKVVVTANPIVMVEPFVKDYLGGDKVLGTEIEV 156
>GPAT5_ARATH (Q9CAY3) Glycerol-3-phosphate acyltransferase 5 (EC 2.3.1.15)| (AtGPAT5) Length = 502 Score = 117 bits (293), Expect = 2e-26 Identities = 56/142 (39%), Positives = 89/142 (62%) Frame = +3 Query: 60 GRSEQTVAADFDGTLLRSSNAFPYYLLVALEAGXXXXXXXXXXXXPFVYVTYIFFSESLA 239 G + +V ++F+GT+L+++++F Y++LVA EA P + + +F ++ A Sbjct: 7 GTTSYSVVSEFEGTILKNADSFSYFMLVAFEAAGLIRFAILLFLWPVITLLDVFSYKNAA 66 Query: 240 ISTLVYISVAGLKVRSIEMAARSVLPKFYAQDVHPESWRVFRSFGKRYIITASPRIMVEP 419 + ++++ GL+ IE AR+VLPKFY DV ++WRVF S KR ++T PR+MVE Sbjct: 67 LKLKIFVATVGLREPEIESVARAVLPKFYMDDVSMDTWRVFSSCKKRVVVTRMPRVMVER 126 Query: 420 FAREFLGADRVVGTELEVGKSG 485 FA+E L AD V+GTEL V + G Sbjct: 127 FAKEHLRADEVIGTELIVNRFG 148
>GPAT7_ARATH (Q9LHS7) Putative glycerol-3-phosphate acyltransferase 7 (EC| 2.3.1.15) (AtGPAT7) Length = 500 Score = 106 bits (265), Expect = 3e-23 Identities = 51/146 (34%), Positives = 84/146 (57%) Frame = +3 Query: 54 SEGRSEQTVAADFDGTLLRSSNAFPYYLLVALEAGXXXXXXXXXXXXPFVYVTYIFFSES 233 S + +V ++ +GTLL++ F Y++LVA EA P + + + + Sbjct: 3 SSTTTSYSVVSELEGTLLKNPKPFAYFMLVAFEASGLIRFATLLFLWPIIALLDVLGYRN 62 Query: 234 LAISTLVYISVAGLKVRSIEMAARSVLPKFYAQDVHPESWRVFRSFGKRYIITASPRIMV 413 ++ +++++ AGL IE AR+VLPKF+ D+ ++WR F S KR ++T PR+MV Sbjct: 63 GSLKLMIFVATAGLHESEIESVARAVLPKFFMDDISMDAWRAFGSCDKRVVVTRMPRVMV 122 Query: 414 EPFAREFLGADRVVGTELEVGKSGKA 491 E FA++ L AD V+GTE+ V + G A Sbjct: 123 ERFAKDHLSADEVIGTEIVVNRFGYA 148
>GPAT2_ARATH (Q9FZ22) Probable glycerol-3-phosphate acyltransferase 2 (EC| 2.3.1.15) (AtGPAT2) Length = 530 Score = 82.8 bits (203), Expect = 5e-16 Identities = 43/136 (31%), Positives = 80/136 (58%) Frame = +3 Query: 66 SEQTVAADFDGTLLRSSNAFPYYLLVALEAGXXXXXXXXXXXXPFVYVTYIFFSESLAIS 245 S T+ + +G LL+S++ FPY+++VA EAG PF+ + S + + Sbjct: 49 SNHTLIFNVEGALLKSNSLFPYFMVVAFEAGGVIRSLFLLVLYPFISL----MSYEMGLK 104 Query: 246 TLVYISVAGLKVRSIEMAARSVLPKFYAQDVHPESWRVFRSFGKRYIITASPRIMVEPFA 425 T+V +S G+K S + +SVLPK++ +DV E ++V + GKR ++ P++M++ F Sbjct: 105 TMVMLSFFGVKKESFRVG-KSVLPKYFLEDVGLEMFQVLKRGGKRVAVSDLPQVMIDVFL 163 Query: 426 REFLGADRVVGTELEV 473 R++L + VVG ++++ Sbjct: 164 RDYLEIEVVVGRDMKM 179
>GPAT3_ARATH (Q9SYJ2) Probable glycerol-3-phosphate acyltransferase 3 (EC| 2.3.1.15) (AtGPAT3) Length = 520 Score = 79.3 bits (194), Expect = 5e-15 Identities = 45/137 (32%), Positives = 75/137 (54%), Gaps = 1/137 (0%) Frame = +3 Query: 66 SEQTVAADFDGTLLRSSNAFPYYLLVALEAGXXXXXXXXXXXXPFVYVTYIFFSESLAIS 245 S T+ + +G LL+S + FPY++LVA EAG P + + S + + Sbjct: 43 SRHTLIFNVEGALLKSDSLFPYFMLVAFEAGGVIRSFLLFILYPLISL----MSHEMGVK 98 Query: 246 TLVYISVAGLKVRSIEMAARSVLPKFYAQDVHPESWRVFRSFGKRYIITAS-PRIMVEPF 422 +V +S G+K A R+VLPK++ +DV E + V + GK+ ++ P++M+E F Sbjct: 99 VMVMVSFFGIKKEGFR-AGRAVLPKYFLEDVGLEMFEVLKRGGKKIGVSDDLPQVMIEGF 157 Query: 423 AREFLGADRVVGTELEV 473 R++L D VVG E++V Sbjct: 158 LRDYLEIDVVVGREMKV 174
>GPAT1_ARATH (Q9SHJ5) Glycerol-3-phosphate acyltransferase 1 (EC 2.3.1.15)| (AtGPAT1) Length = 585 Score = 78.2 bits (191), Expect = 1e-14 Identities = 46/149 (30%), Positives = 81/149 (54%), Gaps = 8/149 (5%) Frame = +3 Query: 48 CS-SEGRSEQTVAADFDGTLLRSSNA------FPYYLLVALEAGXXXXXXXXXXXXPFVY 206 CS S T D DG LLR ++ FPY++LVA E G F++ Sbjct: 95 CSVSSDHYRDTFFCDIDGVLLRQHSSKHFHTFFPYFMLVAFEGGSIIRAILLLLSCSFLW 154 Query: 207 VTYIFFSESLAISTLVYISVAGLKVRSIEMAARSVLPKFYAQDVHPESWRVF-RSFGKRY 383 + + L +I+ +GL+V+ ++ +RSVLPKF+ ++++ + + ++ R+ + Sbjct: 155 T----LQQETKLRVLSFITFSGLRVKDMDNVSRSVLPKFFLENLNIQVYDIWARTEYSKV 210 Query: 384 IITASPRIMVEPFAREFLGADRVVGTELE 470 + T+ P+++VE F RE L AD V+GT+L+ Sbjct: 211 VFTSLPQVLVERFLREHLNADDVIGTKLQ 239
>CICA_CAUCR (O87707) Protein cicA| Length = 222 Score = 48.5 bits (114), Expect = 1e-05 Identities = 49/150 (32%), Positives = 67/150 (44%), Gaps = 7/150 (4%) Frame = +3 Query: 60 GRSEQTVAADFDGTLL--RSSNAFPYYLLVALEAGXXXXXXXXXXXXPFVYVTYIFFSES 233 G VA DFDGTL S NAF + AG + Y+F Sbjct: 22 GHEPLLVAFDFDGTLTVKDSFNAF-----LKWRAGPRWSFGVLRLTPALI--AYVFDRNR 74 Query: 234 LAI-STLVYISVAGLKVRSIEMAARSVLPKFYAQDVHPES---WRVFRSFG-KRYIITAS 398 + + V + G V IE AR+ F + P++ WR +R+ G K I+TAS Sbjct: 75 GKLKAAAVRQFLKGATVAQIENDARAFAEAFAPSLLRPDAVAVWRGWRAKGAKMVIVTAS 134 Query: 399 PRIMVEPFAREFLGADRVVGTELEVGKSGK 488 P ++V PFAR LGAD ++GT L G+ Sbjct: 135 PDLIVAPFARG-LGADLLIGTRLRCSDDGR 163
>CBPY_SCHPO (O13849) Carboxypeptidase Y precursor (EC 3.4.16.5) (CPY)| Length = 1002 Score = 36.2 bits (82), Expect = 0.049 Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 3/86 (3%) Frame = -2 Query: 455 HHPVGTEELPGEGLHHDPGAGRDDVPLAEGP-EH--PPALRVDILRVELGQHRPRRHLDA 285 HH G E +P +HH+PG P+ P EH PP + H P H+ Sbjct: 291 HHEPG-EHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPM----------HHEPGEHMPP 339 Query: 284 PHLEPGHGDVHQGADGQRLGEEDVGH 207 P + + H+G + R G ED H Sbjct: 340 PPFKHHELEEHEGPEHHR-GPEDKEH 364 Score = 34.7 bits (78), Expect = 0.14 Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 5/74 (6%) Frame = -2 Query: 473 DLQLRAHHPVGTEELPGEGLHHDPGAGRDDVPLAEGP-EH--PPALRVDILRVELGQHRP 303 D + AHH G E +P +HH PG P+ P EH PP + H P Sbjct: 194 DREFPAHHEPG-EHMPPPPMHHKPGEHMPPPPMHHEPGEHMPPPPM----------HHEP 242 Query: 302 RRHLDAP--HLEPG 267 H+ P H EPG Sbjct: 243 GEHMPPPPMHHEPG 256 Score = 32.7 bits (73), Expect = 0.54 Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 5/68 (7%) Frame = -2 Query: 455 HHPVGTEELPGEGLHHDPGAGRDDVPLAEGP-EH--PPALRVDILRVELGQHRPRRHLDA 285 HH G E +P +HH+PG P+ P EH PP + H P H+ Sbjct: 265 HHEPG-EHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPM----------HHEPGEHMPP 313 Query: 284 P--HLEPG 267 P H EPG Sbjct: 314 PPMHHEPG 321 Score = 32.7 bits (73), Expect = 0.54 Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 5/68 (7%) Frame = -2 Query: 455 HHPVGTEELPGEGLHHDPGAGRDDVPLAEGP-EH--PPALRVDILRVELGQHRPRRHLDA 285 HH G E +P +HH+PG P+ P EH PP + H P H+ Sbjct: 252 HHEPG-EHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPM----------HHEPGEHMPP 300 Query: 284 P--HLEPG 267 P H EPG Sbjct: 301 PPMHHEPG 308 Score = 32.7 bits (73), Expect = 0.54 Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 5/68 (7%) Frame = -2 Query: 455 HHPVGTEELPGEGLHHDPGAGRDDVPLAEGP-EH--PPALRVDILRVELGQHRPRRHLDA 285 HH G E +P +HH+PG P+ P EH PP + H P H+ Sbjct: 239 HHEPG-EHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPM----------HHEPGEHMPP 287 Query: 284 P--HLEPG 267 P H EPG Sbjct: 288 PPMHHEPG 295 Score = 32.7 bits (73), Expect = 0.54 Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 5/68 (7%) Frame = -2 Query: 455 HHPVGTEELPGEGLHHDPGAGRDDVPLAEGP-EH--PPALRVDILRVELGQHRPRRHLDA 285 HH G E +P +HH+PG P+ P EH PP + H P H+ Sbjct: 226 HHEPG-EHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPM----------HHEPGEHMPP 274 Query: 284 P--HLEPG 267 P H EPG Sbjct: 275 PPMHHEPG 282 Score = 32.7 bits (73), Expect = 0.54 Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 5/68 (7%) Frame = -2 Query: 455 HHPVGTEELPGEGLHHDPGAGRDDVPLAEGP-EH--PPALRVDILRVELGQHRPRRHLDA 285 HH G E +P +HH+PG P+ P EH PP + H P H+ Sbjct: 213 HHKPG-EHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPM----------HHEPGEHMPP 261 Query: 284 P--HLEPG 267 P H EPG Sbjct: 262 PPMHHEPG 269
>KE4L_CAEEL (Q9XTQ7) Hypothetical Ke4-like protein H13N06.5 in chromosome X| Length = 462 Score = 31.6 bits (70), Expect = 1.2 Identities = 16/45 (35%), Positives = 18/45 (40%) Frame = +2 Query: 275 QGEEHRDGGAVGAAQVLRAGCPPGELEGVQVLRQAVHHHGQPQDH 409 QG H GG G A GCP + + A H HG DH Sbjct: 41 QGHGHAHGGH-GHAHDADGGCPYAKAAAAEAATAAAHDHGHAHDH 84
>IMD_STRCN (O33611) Inhibition of morphological differentiation protein| Length = 277 Score = 31.2 bits (69), Expect = 1.6 Identities = 17/34 (50%), Positives = 21/34 (61%) Frame = +3 Query: 384 IITASPRIMVEPFAREFLGADRVVGTELEVGKSG 485 I++ S +VEP E LGADRVV T + VG G Sbjct: 122 IVSTSGAEVVEPIG-ELLGADRVVATRMVVGDDG 154
>CO8A2_HUMAN (P25067) Collagen alpha-2(VIII) chain precursor (Endothelial| collagen) Length = 703 Score = 31.2 bits (69), Expect = 1.6 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 4/53 (7%) Frame = -2 Query: 491 GLAGLADLQLRAHHPVGTEELPG----EGLHHDPGAGRDDVPLAEGPEHPPAL 345 G +G+ LQ A P+G + LPG GL PG GR P GP PP + Sbjct: 460 GPSGIPGLQGPAG-PIGPQGLPGLKGEPGLPGPPGEGRAGEPGTAGPTGPPGV 511
>PRM2_RATFU (Q91VE1) Protamine-2 (Protamine-P2) (Sperm histone P2)| Length = 105 Score = 30.0 bits (66), Expect = 3.5 Identities = 16/44 (36%), Positives = 18/44 (40%) Frame = -2 Query: 428 PGEGLHHDPGAGRDDVPLAEGPEHPPALRVDILRVELGQHRPRR 297 P EG H PG + +G E P D R G HR RR Sbjct: 9 PSEGPHQGPGQDHEREEQGQGQELSPERVEDYGRTHRGHHRHRR 52
>CO8A2_MOUSE (P25318) Collagen alpha-2(VIII) chain precursor (Endothelial| collagen) Length = 699 Score = 30.0 bits (66), Expect = 3.5 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 4/53 (7%) Frame = -2 Query: 491 GLAGLADLQLRAHHPVGTEELPG----EGLHHDPGAGRDDVPLAEGPEHPPAL 345 G +G+ LQ A P+G + LPG GL PG G+ P + GP PP + Sbjct: 456 GPSGIPGLQGPAG-PIGPQGLPGLKGEPGLPGPPGEGKVGEPGSAGPTGPPGV 507
>MEGL_PSEPU (P13254) Methionine gamma-lyase (EC 4.4.1.11) (L-methioninase)| Length = 398 Score = 29.6 bits (65), Expect = 4.6 Identities = 11/16 (68%), Positives = 13/16 (81%) Frame = +2 Query: 374 QAVHHHGQPQDHGGAL 421 +A+HH PQDHGGAL Sbjct: 13 RAIHHGYDPQDHGGAL 28
>TIG_BURPS (Q63V42) Trigger factor (TF)| Length = 449 Score = 29.3 bits (64), Expect = 6.0 Identities = 13/22 (59%), Positives = 14/22 (63%) Frame = +2 Query: 254 VHLRGRAQGEEHRDGGAVGAAQ 319 VH R +G EH DGGA AAQ Sbjct: 150 VHFHARGEGGEHGDGGADTAAQ 171
>TIG_BURMA (Q62JK6) Trigger factor (TF)| Length = 449 Score = 29.3 bits (64), Expect = 6.0 Identities = 13/22 (59%), Positives = 14/22 (63%) Frame = +2 Query: 254 VHLRGRAQGEEHRDGGAVGAAQ 319 VH R +G EH DGGA AAQ Sbjct: 150 VHFHARGEGGEHGDGGADTAAQ 171
>IF2_AZOSE (Q5NZS1) Translation initiation factor IF-2| Length = 945 Score = 29.3 bits (64), Expect = 6.0 Identities = 14/25 (56%), Positives = 16/25 (64%) Frame = +2 Query: 8 RGNGVSEIQARRGLQLRGEVGADGG 82 RG+ E RRGL+ RGEVGA G Sbjct: 310 RGDTAGESAKRRGLKTRGEVGATTG 334
>PRM2_RAT (P11248) Protamine-2 (Protamine-P2) (Sperm histone P2)| Length = 104 Score = 29.3 bits (64), Expect = 6.0 Identities = 16/50 (32%), Positives = 18/50 (36%) Frame = -2 Query: 428 PGEGLHHDPGAGRDDVPLAEGPEHPPALRVDILRVELGQHRPRRHLDAPH 279 P EG H PG + +G E P D R E G H R H Sbjct: 9 PSEGQHQGPGQDHEREEQGQGQELSPERVEDYGRTERGHHHRHRRCKRLH 58
>LTBP1_RAT (Q00918) Latent transforming growth factor beta-binding protein 1| precursor (LTBP-1) (Transforming growth factor beta-1-binding protein 1) (TGF-beta-1-BP-1) (Transforming growth factor beta-1-masking protein, large subunit) Length = 1712 Score = 28.9 bits (63), Expect = 7.8 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 4/70 (5%) Frame = -2 Query: 449 PVGTEELPGEGL----HHDPGAGRDDVPLAEGPEHPPALRVDILRVELGQHRPRRHLDAP 282 P+ +E P E L H PG +V A + P+L + R+E GQ P Sbjct: 765 PLPAKEEPVEALTSSREHGPGVAEPEVVTAPPEKEIPSLDQEKTRLEPGQ---------P 815 Query: 281 HLEPGHGDVH 252 L PG +H Sbjct: 816 QLSPGVSTIH 825
>IF2_PROAC (Q6A7M5) Translation initiation factor IF-2| Length = 964 Score = 28.9 bits (63), Expect = 7.8 Identities = 19/58 (32%), Positives = 23/58 (39%) Frame = -2 Query: 440 TEELPGEGLHHDPGAGRDDVPLAEGPEHPPALRVDILRVELGQHRPRRHLDAPHLEPG 267 T P GL GA P A PE P + GQ+ P+ H AP +PG Sbjct: 119 TSATPRPGLIKSSGASSQQEPPAAKPESKPTPKP-------GQNVPKPHAPAPKPKPG 169 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,442,669 Number of Sequences: 219361 Number of extensions: 1134331 Number of successful extensions: 4112 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 3972 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4103 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3478785780 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
