Clone Information

BLAST Search Result

Clone Name	basd23a04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|NM_188471.1\| Oryza sativa (japonica cultivar-group), predic...	502	e-139
2	dbj\|AK100463.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	502	e-139
3	gb\|AY112199.1\| Zea mays CL62683_1 mRNA sequence	232	1e-57
4	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	222	1e-54
5	dbj\|AP002745.2\| Oryza sativa (japonica cultivar-group) genomic D...	222	1e-54
6	dbj\|AP002861.2\| Oryza sativa (japonica cultivar-group) genomic D...	222	1e-54
7	dbj\|AK105855.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	52	0.002
8	dbj\|AK072614.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	52	0.002
9	dbj\|AK060016.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	52	0.002
10	gb\|AF061966.1\|AF061966 Sus scrofa ATP-specific succinyl-CoA synt...	44	0.59
11	gb\|AC146277.2\| Pan troglodytes BAC clone CH251-17J20 from X, com...	42	2.3
12	gb\|AC146276.2\| Pan troglodytes BAC clone CH251-149B14 from X, co...	42	2.3
13	gb\|AC144386.2\| Pan troglodytes BAC clone CH251-313C12 from X, co...	42	2.3
14	emb\|Z70689.2\|HSU19D8 Human DNA sequence from clone LL0XNC01-19D8...	42	2.3
15	emb\|AL590069.5\| Human DNA sequence from clone RP11-353J17 on chr...	42	2.3
16	emb\|AL513023.12\| Human DNA sequence from clone RP11-256A6 on chr...	42	2.3
17	emb\|CR859586.1\| Pongo pygmaeus mRNA; cDNA DKFZp459M174 (from clo...	42	2.3
18	gb\|AC084823.11\| Mus Musculus Strain C57BL6/J chromosome 8 BAC, R...	42	2.3
19	gb\|AC008716.7\| Homo sapiens chromosome 5 clone CTB-85P21, comple...	42	2.3
20	gb\|AC008473.6\| Homo sapiens chromosome 5 clone CTC-375J15, compl...	42	2.3
21	gb\|AE008384.1\| Methanosarcina mazei strain Goe1, complete genome	42	2.3
22	emb\|AL603864.8\| Mouse DNA sequence from clone RP23-478N15 on chr...	42	2.3
23	emb\|AL603837.8\| Mouse DNA sequence from clone RP23-254F2 on chro...	42	2.3
24	ref\|NM_111801.2\| Arabidopsis thaliana unknown protein AT3G09670 ...	40	9.3
25	ref\|NM_188468.1\| Oryza sativa (japonica cultivar-group), predic...	40	9.3
26	ref\|XM_638712.1\| Dictyostelium discoideum hypothetical protein (...	40	9.3
27	gb\|AC161202.15\| Mus musculus chromosome 8, clone RP23-479K12, co...	40	9.3
28	gb\|AC130529.2\| Mus musculus BAC clone RP23-124O11 from chromosom...	40	9.3
29	gb\|AC121119.12\| Mus musculus chromosome 1, clone RP23-395D10, co...	40	9.3
30	gb\|AE014075.1\| Escherichia coli CFT073, complete genome	40	9.3
31	gb\|AC107231.9\| Mus musculus chromosome 14, clone RP23-475A2, com...	40	9.3
32	gb\|AC129542.9\| Mus musculus chromosome 1, clone RP23-249L15, com...	40	9.3
33	gb\|CP000243.1\| Escherichia coli UTI89, complete genome	40	9.3
34	emb\|Z94055.1\|HS24M15 Human DNA sequence from clone RP1-24M15 on ...	40	9.3
35	emb\|AL354795.17\| Human DNA sequence from clone RP11-174B4 on chr...	40	9.3
36	gb\|DQ397622.1\| Cenarchaeum symbiosum clone C19D04, complete sequ...	40	9.3
37	gb\|DQ397593.2\| Cenarchaeum symbiosum clone C03B12, complete sequ...	40	9.3
38	emb\|AL732483.8\| Mouse DNA sequence from clone RP23-70K10 on chro...	40	9.3
39	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.3
40	gb\|AC016661.7\|AC016661 Arabidopsis thaliana chromosome 3 BAC F11...	40	9.3
41	gb\|AC093326.3\| Homo sapiens BAC clone RP11-625N16 from 2, comple...	40	9.3
42	emb\|BX005000.10\| Zebrafish DNA sequence from clone DKEY-25O16 in...	40	9.3
43	dbj\|BA000045.2\| Gloeobacter violaceus PCC 7421 DNA, complete genome	40	9.3
44	dbj\|AP004749.2\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.3
45	emb\|BX663516.23\| Zebrafish DNA sequence from clone DKEY-16F21 in...	40	9.3
46	dbj\|AK063270.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	9.3
47	emb\|BX248984.11\| Mouse DNA sequence from clone RP23-278P12 on ch...	40	9.3
48	gb\|AC154195.1\| Mus musculus BAC clone RP24-419F8 from 14, comple...	40	9.3
49	gb\|AC120789.12\| Mus musculus chromosome 8, clone RP23-441F24, co...	40	9.3
50	emb\|AL805949.4\| Mouse DNA sequence from clone RP23-424K9 on chro...	40	9.3
51	dbj\|D38590.1\|PIGCYP11B Porcine mRNA for cytochrome P-450 11 beta...	40	9.3

>ref|NM_188471.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1554

 Score =  502 bits (253), Expect = e-139
 Identities = 526/617 (85%)
 Strand = Plus / Plus

                                                                        
Query: 11   atccctgtgaactccagggtggtggtggatagaaatgtggtgaccagccagggtccagga 70
            |||||||||||||| ||||||||||| ||||||||||  ||||||||||| || |||| |
Sbjct: 790  atccctgtgaactctagggtggtggtagatagaaatgcagtgaccagccaagggccagca 849

                                                                        
Query: 71   acagcaatcgagtttgctcttgctttggtggagcagctatatgacaaggagaagatggag 130
            |||||||| || | |||||| |||||||||||||| || || | ||| ||||||  ||||
Sbjct: 850  acagcaattgaatatgctctcgctttggtggagcaactgtacggcaaagagaagtcggag 909

                                                                        
Query: 131  gaggttgctggacctttgtatgtccgccctcaacatggagccgagtataccatcgaagag 190
            |||||||| ||||| |||||||| || ||||||| ||| |  || |||  ||| || |||
Sbjct: 910  gaggttgcaggacccttgtatgttcgtcctcaacctggggttgactatgtcatagatgag 969

                                                                        
Query: 191  cttaattcgattgaatggaaatgcagtggtacacctcagattcttgtgccagttgctaat 250
             | |||||  |||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 970  ttcaattcagttgagtggaaatgcagtggtacacctcaggttcttgtgccagttgctaat 1029

                                                                        
Query: 251  ggttcagaggaaattgaagctcttaatttaatagatgtcctgcgtagagcaggcgcaaat 310
            ||||| |||||||| ||||||||||||||||||||| || ||||||||||||| ||||||
Sbjct: 1030 ggttcggaggaaatggaagctcttaatttaatagatatcttgcgtagagcaggagcaaat 1089

                                                                        
Query: 311  gttacagttgcgtcagttgaggataccctgcaaatcgtgacccggcgtcacaagtttaat 370
            ||||| ||||| |||||||||||||   ||||| | |||||||| || ||||| ||||| 
Sbjct: 1090 gttactgttgcatcagttgaggataagttgcaagttgtgacccgccgccacaaatttaac 1149

                                                                        
Query: 371  ctgatagctgacatgatgttggacgaagctgctaaaatggaatttgatctgattgtcatg 430
            ||||||||||| || ||| |||| |||||||| |||| |||||| |||||||||||||||
Sbjct: 1150 ctgatagctgatattatggtggaagaagctgccaaaagggaattcgatctgattgtcatg 1209

                                                                        
Query: 431  ccgggcggtctgtcaggtgctcaaaagtttgcttgtacagacaaacttgttgatttactg 490
            ||||| |||||| |||||||||||||| || || ||||| |   |||||| |||||||| 
Sbjct: 1210 ccgggtggtctgccaggtgctcaaaagctttctagtacaaaggtacttgtagatttacta 1269

                                                                        
Query: 491  aaaaagcaggcaggatctggtaaaccctatggtgcaatatgtgcttccccagctcatgtc 550
            || || ||||||| ||||  |||||| |||||||||||||| ||||| || ||| |||| 
Sbjct: 1270 aagaaacaggcagaatctaataaaccatatggtgcaatatgcgcttctcctgcttatgtt 1329

                                                                        
Query: 551  ctcgagccccacggtttactaaaggggaagaaggcgacggcatttccacccatggcgcac 610
            ||||||||||| |||||||| |||||||||||||| ||  |||||||||| ||||| |||
Sbjct: 1330 ctcgagccccatggtttactgaaggggaagaaggcaacatcatttccaccaatggcacac 1389

                             
Query: 611  ctgcttacagaccagag 627
            |||||||| || |||||
Sbjct: 1390 ctgcttactgatcagag 1406

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>dbj|AK100463.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023092A20, full
            insert sequence
          Length = 1723

 Score =  502 bits (253), Expect = e-139
 Identities = 526/617 (85%)
 Strand = Plus / Plus

                                                                        
Query: 11   atccctgtgaactccagggtggtggtggatagaaatgtggtgaccagccagggtccagga 70
            |||||||||||||| ||||||||||| ||||||||||  ||||||||||| || |||| |
Sbjct: 778  atccctgtgaactctagggtggtggtagatagaaatgcagtgaccagccaagggccagca 837

                                                                        
Query: 71   acagcaatcgagtttgctcttgctttggtggagcagctatatgacaaggagaagatggag 130
            |||||||| || | |||||| |||||||||||||| || || | ||| ||||||  ||||
Sbjct: 838  acagcaattgaatatgctctcgctttggtggagcaactgtacggcaaagagaagtcggag 897

                                                                        
Query: 131  gaggttgctggacctttgtatgtccgccctcaacatggagccgagtataccatcgaagag 190
            |||||||| ||||| |||||||| || ||||||| ||| |  || |||  ||| || |||
Sbjct: 898  gaggttgcaggacccttgtatgttcgtcctcaacctggggttgactatgtcatagatgag 957

                                                                        
Query: 191  cttaattcgattgaatggaaatgcagtggtacacctcagattcttgtgccagttgctaat 250
             | |||||  |||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 958  ttcaattcagttgagtggaaatgcagtggtacacctcaggttcttgtgccagttgctaat 1017

                                                                        
Query: 251  ggttcagaggaaattgaagctcttaatttaatagatgtcctgcgtagagcaggcgcaaat 310
            ||||| |||||||| ||||||||||||||||||||| || ||||||||||||| ||||||
Sbjct: 1018 ggttcggaggaaatggaagctcttaatttaatagatatcttgcgtagagcaggagcaaat 1077

                                                                        
Query: 311  gttacagttgcgtcagttgaggataccctgcaaatcgtgacccggcgtcacaagtttaat 370
            ||||| ||||| |||||||||||||   ||||| | |||||||| || ||||| ||||| 
Sbjct: 1078 gttaccgttgcatcagttgaggataagttgcaagttgtgacccgccgccacaaatttaac 1137

                                                                        
Query: 371  ctgatagctgacatgatgttggacgaagctgctaaaatggaatttgatctgattgtcatg 430
            ||||||||||| || ||| |||| |||||||| |||| |||||| |||||||||||||||
Sbjct: 1138 ctgatagctgatattatggtggaagaagctgccaaaagggaattcgatctgattgtcatg 1197

                                                                        
Query: 431  ccgggcggtctgtcaggtgctcaaaagtttgcttgtacagacaaacttgttgatttactg 490
            ||||| |||||| |||||||||||||| || || ||||| |   |||||| |||||||| 
Sbjct: 1198 ccgggtggtctgccaggtgctcaaaagctttctagtacaaaggtacttgtagatttacta 1257

                                                                        
Query: 491  aaaaagcaggcaggatctggtaaaccctatggtgcaatatgtgcttccccagctcatgtc 550
            || || ||||||| ||||  |||||| |||||||||||||| ||||| || ||| |||| 
Sbjct: 1258 aagaaacaggcagaatctaataaaccatatggtgcaatatgcgcttctcctgcttatgtt 1317

                                                                        
Query: 551  ctcgagccccacggtttactaaaggggaagaaggcgacggcatttccacccatggcgcac 610
            ||||||||||| |||||||| |||||||||||||| ||  |||||||||| ||||| |||
Sbjct: 1318 ctcgagccccatggtttactgaaggggaagaaggcaacatcatttccaccaatggcacac 1377

                             
Query: 611  ctgcttacagaccagag 627
            |||||||| || |||||
Sbjct: 1378 ctgcttactgatcagag 1394

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>gb|AY112199.1| Zea mays CL62683_1 mRNA sequence
          Length = 473

 Score =  232 bits (117), Expect = 1e-57
 Identities = 282/337 (83%)
 Strand = Plus / Plus

                                                                       
Query: 341 caaatcgtgacccggcgtcacaagtttaatctgatagctgacatgatgttggacgaagct 400
           ||||| |||||||| || || ||||||||||| || ||||| ||||||||||| ||||| 
Sbjct: 12  caaattgtgacccgtcgccataagtttaatctaattgctgatatgatgttggatgaagcc 71

                                                                       
Query: 401 gctaaaatggaatttgatctgattgtcatgccgggcggtctgtcaggtgctcaaaagttt 460
             ||||||| |||||||| |||||||||||||||| ||| ||  ||||||||| ||||||
Sbjct: 72  attaaaatgcaatttgatttgattgtcatgccgggaggtttgcaaggtgctcagaagttt 131

                                                                       
Query: 461 gcttgtacagacaaacttgttgatttactgaaaaagcaggcaggatctggtaaaccctat 520
           ||| ||||| |  |||||||||| ||||| || || || |||| |||   |||||| |||
Sbjct: 132 gctagtacaaagcaacttgttgacttactcaagaaacaagcagaatccaataaaccttat 191

                                                                       
Query: 521 ggtgcaatatgtgcttccccagctcatgtcctcgagccccacggtttactaaaggggaag 580
           |||||||||||||| || ||||||||||| || ||||| ||||||||||| ||||| |||
Sbjct: 192 ggtgcaatatgtgcctctccagctcatgtgcttgagccgcacggtttactgaagggcaag 251

                                                                       
Query: 581 aaggcgacggcatttccacccatggcgcacctgcttacagaccagagcctatgtgagaac 640
           ||||| || ||||||||||| ||| | |||||||| ||||||||||||  ||||||| | 
Sbjct: 252 aaggcaacagcatttccacctatgtcacacctgctcacagaccagagcgcatgtgagcat 311

                                                
Query: 641 agggttgtgattgacggtaatcttatcaccagcagag 677
           ||||||||  | || ||||| ||||||||||| ||||
Sbjct: 312 agggttgttgtagatggtaaccttatcaccagtagag 348

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  222 bits (112), Expect = 1e-54
 Identities = 181/204 (88%)
 Strand = Plus / Plus

                                                                           
Query: 231     ttcttgtgccagttgctaatggttcagaggaaattgaagctcttaatttaatagatgtcc 290
               ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| || 
Sbjct: 6433647 ttcttgtgccagttgctaatggttcggaggaaatggaagctcttaatttaatagatatct 6433706

                                                                           
Query: 291     tgcgtagagcaggcgcaaatgttacagttgcgtcagttgaggataccctgcaaatcgtga 350
               ||||||||||||| ||||||||||| ||||| |||||||||||||   ||||| | ||||
Sbjct: 6433707 tgcgtagagcaggagcaaatgttactgttgcatcagttgaggataagttgcaagttgtga 6433766

                                                                           
Query: 351     cccggcgtcacaagtttaatctgatagctgacatgatgttggacgaagctgctaaaatgg 410
               |||| || ||||| ||||| ||||||||||| || ||| |||| |||||||| |||| ||
Sbjct: 6433767 cccgccgccacaaatttaacctgatagctgatattatggtggaagaagctgccaaaaggg 6433826

                                       
Query: 411     aatttgatctgattgtcatgccgg 434
               |||| |||||||||||||||||||
Sbjct: 6433827 aattcgatctgattgtcatgccgg 6433850



 Score =  115 bits (58), Expect = 2e-22
 Identities = 115/134 (85%)
 Strand = Plus / Plus

                                                                           
Query: 11      atccctgtgaactccagggtggtggtggatagaaatgtggtgaccagccagggtccagga 70
               |||||||||||||| ||||||||||| ||||||||||  ||||||||||| || |||| |
Sbjct: 6432659 atccctgtgaactctagggtggtggtagatagaaatgcagtgaccagccaagggccagca 6432718

                                                                           
Query: 71      acagcaatcgagtttgctcttgctttggtggagcagctatatgacaaggagaagatggag 130
               |||||||| || | |||||| |||||||||||||| || || | ||| ||||||  ||||
Sbjct: 6432719 acagcaattgaatatgctctcgctttggtggagcaactgtacggcaaagagaagtcggag 6432778

                             
Query: 131     gaggttgctggacc 144
               |||||||| |||||
Sbjct: 6432779 gaggttgcaggacc 6432792



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 116/139 (83%)
 Strand = Plus / Plus

                                                                           
Query: 437     ggtctgtcaggtgctcaaaagtttgcttgtacagacaaacttgttgatttactgaaaaag 496
               |||||| |||||||||||||| || || ||||| |   |||||| |||||||| || || 
Sbjct: 6433936 ggtctgccaggtgctcaaaagctttctagtacaaaggtacttgtagatttactaaagaaa 6433995

                                                                           
Query: 497     caggcaggatctggtaaaccctatggtgcaatatgtgcttccccagctcatgtcctcgag 556
               ||||||| ||||  |||||| |||||||||||||| ||||| || ||| |||| ||||||
Sbjct: 6433996 caggcagaatctaataaaccatatggtgcaatatgcgcttctcctgcttatgttctcgag 6434055

                                  
Query: 557     ccccacggtttactaaagg 575
               ||||| |||||||| ||||
Sbjct: 6434056 ccccatggtttactgaagg 6434074



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                      
Query: 573     aggggaagaaggcgacggcatttccacccatggcgcacctgcttacagaccagag 627
               ||||||||||||| ||  |||||||||| ||||| ||||||||||| || |||||
Sbjct: 6434268 aggggaagaaggcaacatcatttccaccaatggcacacctgcttactgatcagag 6434322



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                            
Query: 201     ttgaatggaaatgcagtggtacacctcag 229
               |||| ||||||||||||||||||||||||
Sbjct: 6433357 ttgagtggaaatgcagtggtacacctcag 6433385



 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 542     gctcatgtcctcgagccccacggt 565
               |||||||| |||||||||||||||
Sbjct: 6418386 gctcatgtgctcgagccccacggt 6418409

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>dbj|AP002745.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0489G09
          Length = 148707

 Score =  222 bits (112), Expect = 1e-54
 Identities = 181/204 (88%)
 Strand = Plus / Plus

                                                                        
Query: 231  ttcttgtgccagttgctaatggttcagaggaaattgaagctcttaatttaatagatgtcc 290
            ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| || 
Sbjct: 1127 ttcttgtgccagttgctaatggttcggaggaaatggaagctcttaatttaatagatatct 1186

                                                                        
Query: 291  tgcgtagagcaggcgcaaatgttacagttgcgtcagttgaggataccctgcaaatcgtga 350
            ||||||||||||| ||||||||||| ||||| |||||||||||||   ||||| | ||||
Sbjct: 1187 tgcgtagagcaggagcaaatgttactgttgcatcagttgaggataagttgcaagttgtga 1246

                                                                        
Query: 351  cccggcgtcacaagtttaatctgatagctgacatgatgttggacgaagctgctaaaatgg 410
            |||| || ||||| ||||| ||||||||||| || ||| |||| |||||||| |||| ||
Sbjct: 1247 cccgccgccacaaatttaacctgatagctgatattatggtggaagaagctgccaaaaggg 1306

                                    
Query: 411  aatttgatctgattgtcatgccgg 434
            |||| |||||||||||||||||||
Sbjct: 1307 aattcgatctgattgtcatgccgg 1330



 Score =  115 bits (58), Expect = 2e-22
 Identities = 115/134 (85%)
 Strand = Plus / Plus

                                                                       
Query: 11  atccctgtgaactccagggtggtggtggatagaaatgtggtgaccagccagggtccagga 70
           |||||||||||||| ||||||||||| ||||||||||  ||||||||||| || |||| |
Sbjct: 139 atccctgtgaactctagggtggtggtagatagaaatgcagtgaccagccaagggccagca 198

                                                                       
Query: 71  acagcaatcgagtttgctcttgctttggtggagcagctatatgacaaggagaagatggag 130
           |||||||| || | |||||| |||||||||||||| || || | ||| ||||||  ||||
Sbjct: 199 acagcaattgaatatgctctcgctttggtggagcaactgtacggcaaagagaagtcggag 258

                         
Query: 131 gaggttgctggacc 144
           |||||||| |||||
Sbjct: 259 gaggttgcaggacc 272



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 116/139 (83%)
 Strand = Plus / Plus

                                                                        
Query: 437  ggtctgtcaggtgctcaaaagtttgcttgtacagacaaacttgttgatttactgaaaaag 496
            |||||| |||||||||||||| || || ||||| |   |||||| |||||||| || || 
Sbjct: 1416 ggtctgccaggtgctcaaaagctttctagtacaaaggtacttgtagatttactaaagaaa 1475

                                                                        
Query: 497  caggcaggatctggtaaaccctatggtgcaatatgtgcttccccagctcatgtcctcgag 556
            ||||||| ||||  |||||| |||||||||||||| ||||| || ||| |||| ||||||
Sbjct: 1476 caggcagaatctaataaaccatatggtgcaatatgcgcttctcctgcttatgttctcgag 1535

                               
Query: 557  ccccacggtttactaaagg 575
            ||||| |||||||| ||||
Sbjct: 1536 ccccatggtttactgaagg 1554



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                   
Query: 573  aggggaagaaggcgacggcatttccacccatggcgcacctgcttacagaccagag 627
            ||||||||||||| ||  |||||||||| ||||| ||||||||||| || |||||
Sbjct: 1748 aggggaagaaggcaacatcatttccaccaatggcacacctgcttactgatcagag 1802



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 201 ttgaatggaaatgcagtggtacacctcag 229
           |||| ||||||||||||||||||||||||
Sbjct: 837 ttgagtggaaatgcagtggtacacctcag 865

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>dbj|AP002861.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0665D10
          Length = 134967

 Score =  222 bits (112), Expect = 1e-54
 Identities = 181/204 (88%)
 Strand = Plus / Plus

                                                                         
Query: 231   ttcttgtgccagttgctaatggttcagaggaaattgaagctcttaatttaatagatgtcc 290
             ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| || 
Sbjct: 56042 ttcttgtgccagttgctaatggttcggaggaaatggaagctcttaatttaatagatatct 56101

                                                                         
Query: 291   tgcgtagagcaggcgcaaatgttacagttgcgtcagttgaggataccctgcaaatcgtga 350
             ||||||||||||| ||||||||||| ||||| |||||||||||||   ||||| | ||||
Sbjct: 56102 tgcgtagagcaggagcaaatgttactgttgcatcagttgaggataagttgcaagttgtga 56161

                                                                         
Query: 351   cccggcgtcacaagtttaatctgatagctgacatgatgttggacgaagctgctaaaatgg 410
             |||| || ||||| ||||| ||||||||||| || ||| |||| |||||||| |||| ||
Sbjct: 56162 cccgccgccacaaatttaacctgatagctgatattatggtggaagaagctgccaaaaggg 56221

                                     
Query: 411   aatttgatctgattgtcatgccgg 434
             |||| |||||||||||||||||||
Sbjct: 56222 aattcgatctgattgtcatgccgg 56245



 Score =  115 bits (58), Expect = 2e-22
 Identities = 115/134 (85%)
 Strand = Plus / Plus

                                                                         
Query: 11    atccctgtgaactccagggtggtggtggatagaaatgtggtgaccagccagggtccagga 70
             |||||||||||||| ||||||||||| ||||||||||  ||||||||||| || |||| |
Sbjct: 55054 atccctgtgaactctagggtggtggtagatagaaatgcagtgaccagccaagggccagca 55113

                                                                         
Query: 71    acagcaatcgagtttgctcttgctttggtggagcagctatatgacaaggagaagatggag 130
             |||||||| || | |||||| |||||||||||||| || || | ||| ||||||  ||||
Sbjct: 55114 acagcaattgaatatgctctcgctttggtggagcaactgtacggcaaagagaagtcggag 55173

                           
Query: 131   gaggttgctggacc 144
             |||||||| |||||
Sbjct: 55174 gaggttgcaggacc 55187



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 116/139 (83%)
 Strand = Plus / Plus

                                                                         
Query: 437   ggtctgtcaggtgctcaaaagtttgcttgtacagacaaacttgttgatttactgaaaaag 496
             |||||| |||||||||||||| || || ||||| |   |||||| |||||||| || || 
Sbjct: 56331 ggtctgccaggtgctcaaaagctttctagtacaaaggtacttgtagatttactaaagaaa 56390

                                                                         
Query: 497   caggcaggatctggtaaaccctatggtgcaatatgtgcttccccagctcatgtcctcgag 556
             ||||||| ||||  |||||| |||||||||||||| ||||| || ||| |||| ||||||
Sbjct: 56391 caggcagaatctaataaaccatatggtgcaatatgcgcttctcctgcttatgttctcgag 56450

                                
Query: 557   ccccacggtttactaaagg 575
             ||||| |||||||| ||||
Sbjct: 56451 ccccatggtttactgaagg 56469



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                    
Query: 573   aggggaagaaggcgacggcatttccacccatggcgcacctgcttacagaccagag 627
             ||||||||||||| ||  |||||||||| ||||| ||||||||||| || |||||
Sbjct: 56663 aggggaagaaggcaacatcatttccaccaatggcacacctgcttactgatcagag 56717



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 201   ttgaatggaaatgcagtggtacacctcag 229
             |||| ||||||||||||||||||||||||
Sbjct: 55752 ttgagtggaaatgcagtggtacacctcag 55780



 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 542   gctcatgtcctcgagccccacggt 565
             |||||||| |||||||||||||||
Sbjct: 40781 gctcatgtgctcgagccccacggt 40804

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>dbj|AK105855.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-H05, full
           insert sequence
          Length = 1495

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                             
Query: 221 acacctcagattcttgtgccagttgctaatggttcagaggaaattgaagc 270
           ||||||||||||||||| ||| ||||||||||  ||||||| || |||||
Sbjct: 754 acacctcagattcttgtaccaattgctaatgggacagaggagatggaagc 803

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>dbj|AK072614.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133K03, full
           insert sequence
          Length = 1495

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                             
Query: 221 acacctcagattcttgtgccagttgctaatggttcagaggaaattgaagc 270
           ||||||||||||||||| ||| ||||||||||  ||||||| || |||||
Sbjct: 755 acacctcagattcttgtaccaattgctaatgggacagaggagatggaagc 804

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>dbj|AK060016.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-F09, full
           insert sequence
          Length = 1104

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                             
Query: 221 acacctcagattcttgtgccagttgctaatggttcagaggaaattgaagc 270
           ||||||||||||||||| ||| ||||||||||  ||||||| || |||||
Sbjct: 320 acacctcagattcttgtaccaattgctaatgggacagaggagatggaagc 369

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>gb|AF061966.1|AF061966 Sus scrofa ATP-specific succinyl-CoA synthetase beta subunit (SCS)
            mRNA, partial cds
          Length = 1998

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 389  ttggacgaagctgctaaaatgg 410
            ||||||||||||||||||||||
Sbjct: 1183 ttggacgaagctgctaaaatgg 1204

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>gb|AC146277.2| Pan troglodytes BAC clone CH251-17J20 from X, complete sequence
          Length = 160219

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 1     ttctgaagtgatccctgtgaa 21
             |||||||||||||||||||||
Sbjct: 93907 ttctgaagtgatccctgtgaa 93927

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>gb|AC146276.2| Pan troglodytes BAC clone CH251-149B14 from X, complete sequence
          Length = 180335

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 1      ttctgaagtgatccctgtgaa 21
              |||||||||||||||||||||
Sbjct: 104235 ttctgaagtgatccctgtgaa 104215

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>gb|AC144386.2| Pan troglodytes BAC clone CH251-313C12 from X, complete sequence
          Length = 202661

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 1      ttctgaagtgatccctgtgaa 21
              |||||||||||||||||||||
Sbjct: 198990 ttctgaagtgatccctgtgaa 198970

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>emb|Z70689.2|HSU19D8 Human DNA sequence from clone LL0XNC01-19D8 on chromosome X Contains
            the 5' end of the NXF2 gene for nuclear RNA export factor
            2, complete sequence
          Length = 33884

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 1    ttctgaagtgatccctgtgaa 21
            |||||||||||||||||||||
Sbjct: 2827 ttctgaagtgatccctgtgaa 2807

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>emb|AL590069.5| Human DNA sequence from clone RP11-353J17 on chromosome X, complete
              sequence
          Length = 158828

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 1      ttctgaagtgatccctgtgaa 21
              |||||||||||||||||||||
Sbjct: 125887 ttctgaagtgatccctgtgaa 125867

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>emb|AL513023.12| Human DNA sequence from clone RP11-256A6 on chromosome 6, complete
             sequence
          Length = 165699

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 441   tgtcaggtgctcaaaagtttgcttg 465
             |||||| ||||||||||||||||||
Sbjct: 25813 tgtcagctgctcaaaagtttgcttg 25837

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>emb|CR859586.1| Pongo pygmaeus mRNA; cDNA DKFZp459M174 (from clone DKFZp459M174)
          Length = 3705

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 122 aagatggaggaggttgctgga 142
           |||||||||||||||||||||
Sbjct: 541 aagatggaggaggttgctgga 521

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>gb|AC084823.11| Mus Musculus Strain C57BL6/J chromosome 8 BAC, RP23-290L7, Complete
             Sequence, complete sequence
          Length = 212133

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 476   cttgttgatttactgaaaaag 496
             |||||||||||||||||||||
Sbjct: 15572 cttgttgatttactgaaaaag 15592

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>gb|AC008716.7| Homo sapiens chromosome 5 clone CTB-85P21, complete sequence
          Length = 184589

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 122    aagatggaggaggttgctgga 142
              |||||||||||||||||||||
Sbjct: 172791 aagatggaggaggttgctgga 172811

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>gb|AC008473.6| Homo sapiens chromosome 5 clone CTC-375J15, complete sequence
          Length = 98360

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 122 aagatggaggaggttgctgga 142
           |||||||||||||||||||||
Sbjct: 362 aagatggaggaggttgctgga 382

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>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome
          Length = 4096345

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 483     atttactgaaaaagcaggcag 503
               |||||||||||||||||||||
Sbjct: 2350686 atttactgaaaaagcaggcag 2350706

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>emb|AL603864.8| Mouse DNA sequence from clone RP23-478N15 on chromosome 15, complete
             sequence
          Length = 178412

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 476   cttgttgatttactgaaaaag 496
             |||||||||||||||||||||
Sbjct: 71034 cttgttgatttactgaaaaag 71014

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>emb|AL603837.8| Mouse DNA sequence from clone RP23-254F2 on chromosome 15, complete
             sequence
          Length = 202904

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 476   cttgttgatttactgaaaaag 496
             |||||||||||||||||||||
Sbjct: 26749 cttgttgatttactgaaaaag 26769

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>ref|NM_111801.2| Arabidopsis thaliana unknown protein AT3G09670 mRNA, complete cds
          Length = 2437

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 657  gtaatcttatcaccagcaga 676
            ||||||||||||||||||||
Sbjct: 1727 gtaatcttatcaccagcaga 1708

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>ref|NM_188468.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1041

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 542 gctcatgtcctcgagccccacggt 565
           |||||||| |||||||||||||||
Sbjct: 829 gctcatgtgctcgagccccacggt 852

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>ref|XM_638712.1| Dictyostelium discoideum hypothetical protein (DDB0217618), partial
            mRNA
          Length = 1980

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 28   ggtggtggtggatagaaatg 47
            ||||||||||||||||||||
Sbjct: 1307 ggtggtggtggatagaaatg 1288

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>gb|AC161202.15| Mus musculus chromosome 8, clone RP23-479K12, complete sequence
          Length = 175459

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 118    ggagaagatggaggaggttgctgg 141
              ||||||| ||||||||||||||||
Sbjct: 119101 ggagaagctggaggaggttgctgg 119124

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>gb|AC130529.2| Mus musculus BAC clone RP23-124O11 from chromosome 16, complete
             sequence
          Length = 231967

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 479   gttgatttactgaaaaagca 498
             ||||||||||||||||||||
Sbjct: 97752 gttgatttactgaaaaagca 97733

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>gb|AC121119.12| Mus musculus chromosome 1, clone RP23-395D10, complete sequence
          Length = 221436

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 38    gatagaaatgtggtgaccag 57
             ||||||||||||||||||||
Sbjct: 25555 gatagaaatgtggtgaccag 25536

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>gb|AE014075.1| Escherichia coli CFT073, complete genome
          Length = 5231428

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                  
Query: 51     tgaccagccagggtccaggaacagcaatcgagtttg 86
              ||||||||||||| ||||| ||||| ||||| ||||
Sbjct: 517112 tgaccagccaggggccaggtacagctatcgactttg 517077

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>gb|AC107231.9| Mus musculus chromosome 14, clone RP23-475A2, complete sequence
          Length = 216217

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 612    tgcttacagaccagagccta 631
              ||||||||||||||||||||
Sbjct: 163870 tgcttacagaccagagccta 163889

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>gb|AC129542.9| Mus musculus chromosome 1, clone RP23-249L15, complete sequence
          Length = 194807

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 612    tgcttacagaccagagccta 631
              ||||||||||||||||||||
Sbjct: 135828 tgcttacagaccagagccta 135847

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>gb|CP000243.1| Escherichia coli UTI89, complete genome
          Length = 5065741

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                  
Query: 51     tgaccagccagggtccaggaacagcaatcgagtttg 86
              ||||||||||||| ||||| ||||| ||||| ||||
Sbjct: 457303 tgaccagccaggggccaggtacagctatcgactttg 457268

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>emb|Z94055.1|HS24M15 Human DNA sequence from clone RP1-24M15 on chromosome 1q24-25 Contains
             part of the TNR gene fortenascin R (restrictin, janusin),
             complete sequence
          Length = 134539

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 231   ttcttgtgccagttgctaat 250
             ||||||||||||||||||||
Sbjct: 29663 ttcttgtgccagttgctaat 29682

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>emb|AL354795.17| Human DNA sequence from clone RP11-174B4 on chromosome 9q21.2-22.1
              Contains the TRPM6 gene for transient receptor potential
              cation channel, subfamily  M, member 6 (CHAK2, FLJ20087,
              FLJ22628) and 2 CpG islands, complete sequence
          Length = 195290

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 119    gagaagatggaggaggttgctgga 142
              ||||||| ||||||||||||||||
Sbjct: 156969 gagaagaaggaggaggttgctgga 156946

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>gb|DQ397622.1| Cenarchaeum symbiosum clone C19D04, complete sequence
          Length = 42094

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 485   ttactgaaaaagcaggcagg 504
             ||||||||||||||||||||
Sbjct: 38357 ttactgaaaaagcaggcagg 38338

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>gb|DQ397593.2| Cenarchaeum symbiosum clone C03B12, complete sequence
          Length = 38618

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 485  ttactgaaaaagcaggcagg 504
            ||||||||||||||||||||
Sbjct: 2347 ttactgaaaaagcaggcagg 2328

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>emb|AL732483.8| Mouse DNA sequence from clone RP23-70K10 on chromosome 2, complete
              sequence
          Length = 201542

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 265    tgaagctcttaatttaatag 284
              ||||||||||||||||||||
Sbjct: 182098 tgaagctcttaatttaatag 182079

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                            
Query: 227      cagattcttgtgccagttgctaatggttcagaggaaattgaagc 270
                ||||||||||| ||| ||||||||||  ||||||| || |||||
Sbjct: 19478076 cagattcttgtaccaattgctaatgggacagaggagatggaagc 19478033

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>gb|AC016661.7|AC016661 Arabidopsis thaliana chromosome 3 BAC F11F8 genomic sequence, complete
             sequence
          Length = 107603

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 657   gtaatcttatcaccagcaga 676
             ||||||||||||||||||||
Sbjct: 66631 gtaatcttatcaccagcaga 66612

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>gb|AC093326.3| Homo sapiens BAC clone RP11-625N16 from 2, complete sequence
          Length = 188711

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 46     tgtggtgaccagccagggtc 65
              ||||||||||||||||||||
Sbjct: 105148 tgtggtgaccagccagggtc 105129

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>emb|BX005000.10| Zebrafish DNA sequence from clone DKEY-25O16 in linkage group 1,
             complete sequence
          Length = 234373

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 476   cttgttgatttactgaaaaa 495
             ||||||||||||||||||||
Sbjct: 10490 cttgttgatttactgaaaaa 10509

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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 432     cgggcggtctgtcaggtgctcaaa 455
               |||||||||| |||||||||||||
Sbjct: 2182609 cgggcggtctctcaggtgctcaaa 2182632

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>dbj|AP004749.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0410C01
          Length = 138424

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                         
Query: 227   cagattcttgtgccagttgctaatggttcagaggaaattgaagc 270
             ||||||||||| ||| ||||||||||  ||||||| || |||||
Sbjct: 96485 cagattcttgtaccaattgctaatgggacagaggagatggaagc 96442

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>emb|BX663516.23| Zebrafish DNA sequence from clone DKEY-16F21 in linkage group 10,
              complete sequence
          Length = 183367

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 487    actgaaaaagcaggcaggat 506
              ||||||||||||||||||||
Sbjct: 133483 actgaaaaagcaggcaggat 133464

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>dbj|AK063270.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-B10, full
            insert sequence
          Length = 1474

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 542  gctcatgtcctcgagccccacggt 565
            |||||||| |||||||||||||||
Sbjct: 1089 gctcatgtgctcgagccccacggt 1112

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>emb|BX248984.11| Mouse DNA sequence from clone RP23-278P12 on chromosome 1, complete
             sequence
          Length = 191884

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 612   tgcttacagaccagagccta 631
             ||||||||||||||||||||
Sbjct: 52218 tgcttacagaccagagccta 52237

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>gb|AC154195.1| Mus musculus BAC clone RP24-419F8 from 14, complete sequence
          Length = 159281

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 612    tgcttacagaccagagccta 631
              ||||||||||||||||||||
Sbjct: 140247 tgcttacagaccagagccta 140228

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>gb|AC120789.12| Mus musculus chromosome 8, clone RP23-441F24, complete sequence
          Length = 204013

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 118    ggagaagatggaggaggttgctgg 141
              ||||||| ||||||||||||||||
Sbjct: 190089 ggagaagctggaggaggttgctgg 190112

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>emb|AL805949.4| Mouse DNA sequence from clone RP23-424K9 on chromosome 4, complete
             sequence
          Length = 193704

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 612   tgcttacagaccagagccta 631
             ||||||||||||||||||||
Sbjct: 92186 tgcttacagaccagagccta 92205

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>dbj|D38590.1|PIGCYP11B Porcine mRNA for cytochrome P-450 11 beta, complete cds
          Length = 1671

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 54  ccagccagggtccaggaaca 73
           ||||||||||||||||||||
Sbjct: 363 ccagccagggtccaggaaca 344


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,051,672
Number of Sequences: 3902068
Number of extensions: 6051672
Number of successful extensions: 142270
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 141943
Number of HSP's gapped (non-prelim): 327
length of query: 677
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 654
effective length of database: 17,143,297,704
effective search space: 11211716698416
effective search space used: 11211716698416
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result