| Clone Name | basd22k21 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_470566.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2157 Score = 531 bits (268), Expect = e-148 Identities = 553/648 (85%) Strand = Plus / Plus Query: 16 ttactgccctcaacacgctcttcactagcttgaattctccggggcagctcaaaggctggc 75 |||||| |||||| ||||||||||||||| ||||||||||||||||||||||||| |||| Sbjct: 116 ttactgtcctcaatacgctcttcactagcctgaattctccggggcagctcaaaggttggc 175 Query: 76 aagtgaatggtggtgacccttgcggcgaatcatggcagggcatcacttgctcaggatcgt 135 | | | |||||| |||||||| ||| ||||||||||||| ||||| ||||||||||| | Sbjct: 176 aggcaagtggtggagacccttgtggccaatcatggcagggtatcacgtgctcaggatcat 235 Query: 136 cggttacagcaatcaaattaccaagcttgggcctgtccgggaatttgggctacaatatga 195 | ||||| ||||||||||||||||||||||| || ||||| ||||||| |||||||||| Sbjct: 236 cagttactgcaatcaaattaccaagcttggggctctccggtaatttggcgtacaatatga 295 Query: 196 ataccatgagttcattggtcgagcttgatatgagccagaacagccttggtggtggacaag 255 |||||||| |||||||| | ||| | ||||||||||| |||| |||||||||||| ||| Sbjct: 296 ataccatgggttcattgattgagatcgatatgagccaaaacaaccttggtggtggccaac 355 Query: 256 cgatacaatataatctccccacagctaagcttgagaggctcaatcttgcaggaaaccagt 315 |||||| || ||||| ||||| ||||||||||||||||||||| ||||||||||||| Sbjct: 356 agatacagtacaatcttcccactaataagcttgagaggctcaatctcgcaggaaaccagt 415 Query: 316 ttggtggagagttgccctactcgattttctcgatgaataatcttaagtatttaaatatta 375 | |||| | || ||||||||||||||||||||| ||||||||||||||||||| | | Sbjct: 416 tcactggaaatttaccctactcgattttctcgatgtctaatcttaagtatttaaatctaa 475 Query: 376 accataaccagttacaaggaaaaatgaccgacgtattttccaaccttggcagcttgacaa 435 | |||||||| || |||||||| || || || |||||||||| ||| |||||||||| Sbjct: 476 atcataaccaattgcaaggaaatataactgatgtattttccagcctctatagcttgacaa 535 Query: 436 cagtggatctctcctttaattctcttactggtgacctaccagaaggtttaagttcactgt 495 || ||||||| ||||||||||||||| |||||||||||||| |||| || | ||| ||| Sbjct: 536 cactggatctttcctttaattctcttgctggtgacctaccacaagggttcacatcattgt 595 Query: 496 caagtgttaaaactctatatttgcagaacaatcagttgaccggttctatcaatgtcctag 555 |||| | || | ||||| ||||||||||||| || || |||| |||||||||||| | Sbjct: 596 caagcctgaagaaattatatctgcagaacaatcaatttactggttatatcaatgtccttg 655 Query: 556 ccaatcttcccctttctgatctgaatgttgcaaataatcgcttcactggttggattccta 615 | ||||| |||||| |||||||||||||||||| |||| |||||||| |||||||||| Sbjct: 656 ctaatctcccccttgatgatctgaatgttgcaaacaatcatttcactggctggattccta 715 Query: 616 gtcaacttaagaagataaatagtctacagactgatggtaattcttgga 663 ||||||||||||||||||| | |||||| ||||| || |||||||||| Sbjct: 716 gtcaacttaagaagataaacaatctacaaactgacggaaattcttgga 763
>dbj|AK100621.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108F23, full insert sequence Length = 2637 Score = 531 bits (268), Expect = e-148 Identities = 553/648 (85%) Strand = Plus / Plus Query: 16 ttactgccctcaacacgctcttcactagcttgaattctccggggcagctcaaaggctggc 75 |||||| |||||| ||||||||||||||| ||||||||||||||||||||||||| |||| Sbjct: 348 ttactgtcctcaatacgctcttcactagcctgaattctccggggcagctcaaaggttggc 407 Query: 76 aagtgaatggtggtgacccttgcggcgaatcatggcagggcatcacttgctcaggatcgt 135 | | | |||||| |||||||| ||| ||||||||||||| ||||| ||||||||||| | Sbjct: 408 aggcaagtggtggagacccttgtggccaatcatggcagggtatcacgtgctcaggatcat 467 Query: 136 cggttacagcaatcaaattaccaagcttgggcctgtccgggaatttgggctacaatatga 195 | ||||| ||||||||||||||||||||||| || ||||| ||||||| |||||||||| Sbjct: 468 cagttactgcaatcaaattaccaagcttggggctctccggtaatttggcgtacaatatga 527 Query: 196 ataccatgagttcattggtcgagcttgatatgagccagaacagccttggtggtggacaag 255 |||||||| |||||||| | ||| | ||||||||||| |||| |||||||||||| ||| Sbjct: 528 ataccatgggttcattgattgagatcgatatgagccaaaacaaccttggtggtggccaac 587 Query: 256 cgatacaatataatctccccacagctaagcttgagaggctcaatcttgcaggaaaccagt 315 |||||| || ||||| ||||| ||||||||||||||||||||| ||||||||||||| Sbjct: 588 agatacagtacaatcttcccactaataagcttgagaggctcaatctcgcaggaaaccagt 647 Query: 316 ttggtggagagttgccctactcgattttctcgatgaataatcttaagtatttaaatatta 375 | |||| | || ||||||||||||||||||||| ||||||||||||||||||| | | Sbjct: 648 tcactggaaatttaccctactcgattttctcgatgtctaatcttaagtatttaaatctaa 707 Query: 376 accataaccagttacaaggaaaaatgaccgacgtattttccaaccttggcagcttgacaa 435 | |||||||| || |||||||| || || || |||||||||| ||| |||||||||| Sbjct: 708 atcataaccaattgcaaggaaatataactgatgtattttccagcctctatagcttgacaa 767 Query: 436 cagtggatctctcctttaattctcttactggtgacctaccagaaggtttaagttcactgt 495 || ||||||| ||||||||||||||| |||||||||||||| |||| || | ||| ||| Sbjct: 768 cactggatctttcctttaattctcttgctggtgacctaccacaagggttcacatcattgt 827 Query: 496 caagtgttaaaactctatatttgcagaacaatcagttgaccggttctatcaatgtcctag 555 |||| | || | ||||| ||||||||||||| || || |||| |||||||||||| | Sbjct: 828 caagcctgaagaaattatatctgcagaacaatcaatttactggttatatcaatgtccttg 887 Query: 556 ccaatcttcccctttctgatctgaatgttgcaaataatcgcttcactggttggattccta 615 | ||||| |||||| |||||||||||||||||| |||| |||||||| |||||||||| Sbjct: 888 ctaatctcccccttgatgatctgaatgttgcaaacaatcatttcactggctggattccta 947 Query: 616 gtcaacttaagaagataaatagtctacagactgatggtaattcttgga 663 ||||||||||||||||||| | |||||| ||||| || |||||||||| Sbjct: 948 gtcaacttaagaagataaacaatctacaaactgacggaaattcttgga 995
>gb|AF023165.1|AF023165 Zea mays leucine-rich repeat transmembrane protein kinase 2 (ltk2) mRNA, complete cds Length = 2388 Score = 224 bits (113), Expect = 3e-55 Identities = 509/641 (79%) Strand = Plus / Plus Query: 23 cctcaacacgctcttcactagcttgaattctccggggcagctcaaaggctggcaagtgaa 82 |||||| ||||||||||| || |||||||||| |||||||||| || |||| | ||| Sbjct: 237 cctcaatacgctcttcaccagtctgaattctcctgggcagctcagagcttggcgggcgaa 296 Query: 83 tggtggtgacccttgcggcgaatcatggcagggcatcacttgctcaggatcgtcggttac 142 ||| ||||| ||||| ||| | |||||||||||||| || ||||||||||| ||| || Sbjct: 297 tggcggtgatccttgtggccagtcatggcagggcattacctgctcaggatcaggggtcac 356 Query: 143 agcaatcaaattaccaagcttgggcctgtccgggaatttgggctacaatatgaataccat 202 |||| |||||||| |||| || |||| ||| ||| |||||| ||||||| | | Sbjct: 357 taaaatcctattaccaaacttgtcactcaccggaaatctggcctacaacatgaataactt 416 Query: 203 gagttcattggtcgagcttgatatgagccagaacagccttggtggtggacaagcgataca 262 | ||||||| || |||||||| ||||||| || | ||||||||||||| ||||| Sbjct: 417 gggttcattagttgagcttgacttgagccaaaataaccttggtggtggaggccaaataca 476 Query: 263 atataatctccccacagctaagcttgagaggctcaatcttgcaggaaaccagtttggtgg 322 || ||||| |||| | |||||||||| ||||||||||||||||| || |||||||| Sbjct: 477 gtacaatcttcccaatgtgaagcttgagaaactcaatcttgcaggaaatcaatttggtgg 536 Query: 323 agagttgccctactcgattttctcgatgaataatcttaagtatttaaatattaaccataa 382 | | || |||||||| |||| ||||| |||||||||||||||||| |||| ||||| Sbjct: 537 aaatttaccctactcaatttcgacgatgcctaatcttaagtatttaaaccttaatcataa 596 Query: 383 ccagttacaaggaaaaatgaccgacgtattttccaaccttggcagcttgacaacagtgga 442 ||| |||||||||| || || || ||||||||||||||| || ||| || |||| Sbjct: 597 ccaactacaaggaaacatcactgatgtattttccaacctttatagtttgtcagagctgga 656 Query: 443 tctctcctttaattctcttactggtgacctaccagaaggtttaagttcactgtcaagtgt 502 ||||||||||||||||||||||||||| |||||| || |||| | | | ||||||| | Sbjct: 657 tctctcctttaattctcttactggtgatctaccacaaagtttcactggattgtcaagcct 716 Query: 503 taaaactctatatttgcagaacaatcagttgaccggttctatcaatgtcctagccaatct 562 |||| | |||||||||||||| || || || |||| |||||||||| ||||||| || Sbjct: 717 gaaaagaatgtatttgcagaacaaccaatttactggttatatcaatgtcttagccaacct 776 Query: 563 tcccctttctgatctgaatgttgcaaataatcgcttcactggttggattcctagtcaact 622 ||||||| |||||||||| ||| || | ||||||||||||||||| ||||| || Sbjct: 777 tccccttgaaaccctgaatgttggaaacaaccatttcactggttggattcccagtcagct 836 Query: 623 taagaagataaatagtctacagactgatggtaattcttgga 663 |||| ||||||| | ||||||||| || || |||||||||| Sbjct: 837 taaggagataaacaatctacagaccgacggaaattcttgga 877
>gb|AF023164.1|AF023164 Zea mays leucine-rich repeat transmembrane protein kinase 1 (ltk1) mRNA, partial cds Length = 2310 Score = 210 bits (106), Expect = 4e-51 Identities = 313/382 (81%) Strand = Plus / Plus Query: 282 aagcttgagaggctcaatcttgcaggaaaccagtttggtggagagttgccctactcgatt 341 |||||||||| ||||||||||||||||| || ||||||||| | || |||||||| ||| Sbjct: 282 aagcttgagaaactcaatcttgcaggaaatcaatttggtggaaatttaccctactcaatt 341 Query: 342 ttctcgatgaataatcttaagtatttaaatattaaccataaccagttacaaggaaaaatg 401 | ||||| |||||||||||||||||| |||| |||||||| |||||||||| || Sbjct: 342 tcgacgatgcctaatcttaagtatttaaaccttaatcataaccaactacaaggaaacatc 401 Query: 402 accgacgtattttccaaccttggcagcttgacaacagtggatctctcctttaattctctt 461 | || ||||||||||||||| ||| ||| || | ||||||| ||||||||||| ||| Sbjct: 402 agtgatgtattttccaacctttacagtttgtcagaactggatctgtcctttaattccctt 461 Query: 462 actggtgacctaccagaaggtttaagttcactgtcaagtgttaaaactctatatttgcag 521 |||||||| |||||| || |||| | | | ||||||| | |||| | ||||||||| Sbjct: 462 actggtgatctaccacaaagtttcactggattgtcaagcctgaaaaaagtgtatttgcag 521 Query: 522 aacaatcagttgaccggttctatcaatgtcctagccaatcttcccctttctgatctgaat 581 ||||| || || || ||| |||||||||| |||||||||| |||||| | ||||| Sbjct: 522 aacaaccaatttactggtaatatcaatgtcttagccaatctcccccttgaaactttgaat 581 Query: 582 gttgcaaataatcgcttcactggttggattcctagtcaacttaagaagataaatagtcta 641 ||||| || || | ||||||||||||||||||||||| |||||||||||||| |||||| Sbjct: 582 gttgcgaacaaccatttcactggttggattcctagtcagcttaagaagataaacagtcta 641 Query: 642 cagactgatggtaattcttgga 663 ||||||||||| |||||||||| Sbjct: 642 cagactgatggaaattcttgga 663 Score = 105 bits (53), Expect = 2e-19 Identities = 185/229 (80%) Strand = Plus / Plus Query: 23 cctcaacacgctcttcactagcttgaattctccggggcagctcaaaggctggcaagtgaa 82 |||||||||||||||||| || |||||||||| |||||||||| ||| ||||| | ||| Sbjct: 23 cctcaacacgctcttcaccagtctgaattctcctgggcagctcacaggttggcaggcgaa 82 Query: 83 tggtggtgacccttgcggcgaatcatggcagggcatcacttgctcaggatcgtcggttac 142 ||| ||||| ||||| ||| | |||||| ||||||| |||||||||||||| ||| || Sbjct: 83 tgggggtgatccttgtggccagtcatggaagggcattacttgctcaggatcaggggtcac 142 Query: 143 agcaatcaaattaccaagcttgggcctgtccgggaatttgggctacaatatgaataccat 202 |||| ||||||| | |||| || | || ||||||| |||||| ||||||| | | Sbjct: 143 taaaatccaattacctaacttgtcactcactggaaatttggcctacaacatgaataactt 202 Query: 203 gagttcattggtcgagcttgatatgagccagaacagccttggtggtgga 251 | ||||||| || |||||||| |||||||| || | |||||| |||||| Sbjct: 203 gggttcattagttgagcttgacatgagccaaaataaccttggcggtgga 251
>gb|AY109511.1| Zea mays CL1762_1 mRNA sequence Length = 2393 Score = 198 bits (100), Expect = 2e-47 Identities = 463/584 (79%) Strand = Plus / Plus Query: 80 gaatggtggtgacccttgcggcgaatcatggcagggcatcacttgctcaggatcgtcggt 139 |||||| ||||| ||||| ||| | |||||||||||||| || ||||||||||| ||| Sbjct: 299 gaatggcggtgatccttgtggccagtcatggcagggcattacctgctcaggatcaggggt 358 Query: 140 tacagcaatcaaattaccaagcttgggcctgtccgggaatttgggctacaatatgaatac 199 || |||| |||||||| |||| || |||| ||| ||| |||||| ||||||| Sbjct: 359 cactaaaatcctattaccaaacttgtcactcgccggaaatctggcctacaacatgaataa 418 Query: 200 catgagttcattggtcgagcttgatatgagccagaacagccttggtggtggacaagcgat 259 | || ||||||| || |||||||| ||||||| || | |||||| |||||| || Sbjct: 419 cttgggttcattagttgagcttgacttgagccaaaataaccttggcggtggaggccaaat 478 Query: 260 acaatataatctccccacagctaagcttgagaggctcaatcttgcaggaaaccagtttgg 319 ||| || ||||| |||| | |||||||||| ||||||||||||||||| || ||||| Sbjct: 479 acagtacaatcttcccaatgtgaagcttgagaaactcaatcttgcaggaaatcaatttgg 538 Query: 320 tggagagttgccctactcgattttctcgatgaataatcttaagtatttaaatattaacca 379 |||| | || |||||||| |||| ||||| |||||||||||||||||| |||| || Sbjct: 539 tggaaatttaccctactcaatttcgacgatgcctaatcttaagtatttaaaccttaatca 598 Query: 380 taaccagttacaaggaaaaatgaccgacgtattttccaaccttggcagcttgacaacagt 439 |||||| |||||||||| || || || ||||||||||||||| || ||| || | Sbjct: 599 taaccaactacaaggaaacatcactgatgtattttccaacctttatagtttgtcagagct 658 Query: 440 ggatctctcctttaattctcttactggtgacctaccagaaggtttaagttcactgtcaag 499 |||||||||||||||||||||||||||||| |||||| ||||||| | | | ||||||| Sbjct: 659 ggatctctcctttaattctcttactggtgatctaccacaaggtttcactggattgtcaag 718 Query: 500 tgttaaaactctatatttgcagaacaatcagttgaccggttctatcaatgtcctagccaa 559 | |||| | |||||||||||||| || || || |||| |||||||||| ||||||| Sbjct: 719 cctgaaaagaatgtatttgcagaacaaccaatttactggttatatcaatgtcttagccaa 778 Query: 560 tcttcccctttctgatctgaatgttgcaaataatcgcttcactggttggattcctagtca 619 ||||||||| |||||||||| ||| || | ||||||||||||||||| ||||| Sbjct: 779 ccttccccttgaaaccctgaatgttggaaacaaccatttcactggttggattcccagtca 838 Query: 620 acttaagaagataaatagtctacagactgatggtaattcttgga 663 |||||| ||||||| | ||||||||| || || |||||||||| Sbjct: 839 gcttaaggagataaacaatctacagaccgacggaaattcttgga 882
>gb|AF023166.1|AF023166 Zea mays leucine-rich repeat transmembrane protein kinase 3 (ltk3) mRNA, partial cds Length = 1077 Score = 194 bits (98), Expect = 3e-46 Identities = 311/382 (81%) Strand = Plus / Plus Query: 282 aagcttgagaggctcaatcttgcaggaaaccagtttggtggagagttgccctactcgatt 341 |||||||||| ||||||||||||||||| || ||||||||| | || |||||||| ||| Sbjct: 219 aagcttgagaaactcaatcttgcaggaaatcaatttggtggaaatttaccctactcaatt 278 Query: 342 ttctcgatgaataatcttaagtatttaaatattaaccataaccagttacaaggaaaaatg 401 | ||||| |||||||||||||||||| |||| |||||||| |||||||||| || Sbjct: 279 tcgacgatgcctaatcttaagtatttaaaccttaatcataaccaactacaaggaaacatc 338 Query: 402 accgacgtattttccaaccttggcagcttgacaacagtggatctctcctttaattctctt 461 || || ||||||||||||||| || ||| || ||||||||||||||||||||||| Sbjct: 339 actgatgtattttccaacctttatagtttgtcagagctggatctctcctttaattctctt 398 Query: 462 actggtgacctaccagaaggtttaagttcactgtcaagtgttaaaactctatatttgcag 521 |||||||| |||||| ||||||| | | | ||||||| | |||| | ||||||||| Sbjct: 399 actggtgatctaccacaaggtttcactggattgtcaagcctgaaaagaatgtatttgcag 458 Query: 522 aacaatcagttgaccggttctatcaatgtcctagccaatcttcccctttctgatctgaat 581 ||||| || || || ||| |||||||||| ||||||| ||||||||| |||||| Sbjct: 459 aacaaccaatttactagttatatcaatgtcttagccaaccttccccttgaaaccctgaat 518 Query: 582 gttgcaaataatcgcttcactggttggattcctagtcaacttaagaagataaatagtcta 641 |||| ||| || | ||||||||||||||||| ||||| |||||||||||||| | |||| Sbjct: 519 gttggaaacaaccatttcactggttggattcccagtcagcttaagaagataaacaatcta 578 Query: 642 cagactgatggtaattcttgga 663 ||||| || || |||||||||| Sbjct: 579 cagaccgacggaaattcttgga 600 Score = 63.9 bits (32), Expect = 6e-07 Identities = 137/172 (79%) Strand = Plus / Plus Query: 80 gaatggtggtgacccttgcggcgaatcatggcagggcatcacttgctcaggatcgtcggt 139 |||||| ||||| ||||| ||| | |||||| ||||||| |||||||||||||| ||| Sbjct: 17 gaatgggggtgatccttgtggccagtcatggaagggcattacttgctcaggatcaggggt 76 Query: 140 tacagcaatcaaattaccaagcttgggcctgtccgggaatttgggctacaatatgaatac 199 || |||| ||||||||| |||| || | || ||||||| |||||| ||||||| Sbjct: 77 cactaaaatccaattaccaaacttgtcactcgctggaaatttggcctacaacatgaataa 136 Query: 200 catgagttcattggtcgagcttgatatgagccagaacagccttggtggtgga 251 | || ||||||| || |||||||| |||||||| || | |||||| |||||| Sbjct: 137 cttgggttcattagttgagcttgacatgagccaaaataaccttggcggtgga 188
>gb|AY224517.1| Oryza sativa (japonica cultivar-group) isolate 20144 putative leucine-rich repeat transmembrane protein kinase mRNA, complete cds Length = 2202 Score = 170 bits (86), Expect = 4e-39 Identities = 308/382 (80%) Strand = Plus / Plus Query: 282 aagcttgagaggctcaatcttgcaggaaaccagtttggtggagagttgccctactcgatt 341 ||||||||||||||||||||||| || |||||||||| |||| | |||| ||||| ||| Sbjct: 409 aagcttgagaggctcaatcttgctgggaaccagtttgctggaaatgtgccatactcaatt 468 Query: 342 ttctcgatgaataatcttaagtatttaaatattaaccataaccagttacaaggaaaaatg 401 | | | ||| ||| ||||||||| |||| |||| |||||||| ||||||||||| ||| Sbjct: 469 tccacaatgcctaaacttaagtatctaaaccttaatcataaccaattacaaggaaatatg 528 Query: 402 accgacgtattttccaaccttggcagcttgacaacagtggatctctcctttaattctctt 461 || || || |||||||||||| || || ||||| | ||||||||||| ||||||||| Sbjct: 529 acagatgtcttttccaaccttccaagtttatcaacacttgatctctccttaaattctctt 588 Query: 462 actggtgacctaccagaaggtttaagttcactgtcaagtgttaaaactctatatttgcag 521 |||||||| || ||| || |||| | ||| |||||||| | |||||| | ||| ||||| Sbjct: 589 actggtgatctcccacaaagtttcacttctctgtcaagcctgaaaactttgtatctgcag 648 Query: 522 aacaatcagttgaccggttctatcaatgtcctagccaatcttcccctttctgatctgaat 581 ||||| || || || || || ||||||||||| || ||||||||||| | || | ||| Sbjct: 649 aacaaccaatttactggatcaatcaatgtccttgctaatcttcccctggataatttaaat 708 Query: 582 gttgcaaataatcgcttcactggttggattcctagtcaacttaagaagataaatagtcta 641 || | ||| || || || |||||||||||||||| | | || ||||| ||||||||||| Sbjct: 709 gtgggaaacaaccgttttactggttggattcctaatgagctaaagaaaataaatagtctt 768 Query: 642 cagactgatggtaattcttgga 663 || || ||||| |||||||||| Sbjct: 769 caaaccgatggcaattcttgga 790 Score = 113 bits (57), Expect = 8e-22 Identities = 165/201 (82%) Strand = Plus / Plus Query: 3 gacgccactgaccttactgccctcaacacgctcttcactagcttgaattctccggggcag 62 ||||||| ||| |||||| |||||| |||| ||||| ||| | ||||| ||||||||| Sbjct: 130 gacgccaatgatgttactgtcctcaatgcgctattcaccagcctcaattcgccggggcag 189 Query: 63 ctcaaaggctggcaagtgaatggtggtgacccttgcggcgaatcatggcagggcatcact 122 || || ||||| |||||||| |||||||| || |||| ||||||||||||||||| Sbjct: 190 ctgcgcggttggcaggtgaatggcggtgacccatgtggcgcctcatggcagggcatcacc 249 Query: 123 tgctcaggatcgtcggttacagcaatcaaattaccaagcttgggcctgtccgggaatttg 182 ||||| ||||| || || |||||||| ||||| || |||||||| || || |||||| || Sbjct: 250 tgctctggatcatcagtcacagcaattaaattgccgagcttggggctttcggggaatctg 309 Query: 183 ggctacaatatgaataccatg 203 | |||||||||||| |||||| Sbjct: 310 gcctacaatatgaacaccatg 330
>dbj|AK111516.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002F24, full insert sequence Length = 2433 Score = 170 bits (86), Expect = 4e-39 Identities = 308/382 (80%) Strand = Plus / Plus Query: 282 aagcttgagaggctcaatcttgcaggaaaccagtttggtggagagttgccctactcgatt 341 ||||||||||||||||||||||| || |||||||||| |||| | |||| ||||| ||| Sbjct: 428 aagcttgagaggctcaatcttgctgggaaccagtttgctggaaatgtgccatactcaatt 487 Query: 342 ttctcgatgaataatcttaagtatttaaatattaaccataaccagttacaaggaaaaatg 401 | | | ||| ||| ||||||||| |||| |||| |||||||| ||||||||||| ||| Sbjct: 488 tccacaatgcctaaacttaagtatctaaaccttaatcataaccaattacaaggaaatatg 547 Query: 402 accgacgtattttccaaccttggcagcttgacaacagtggatctctcctttaattctctt 461 || || || |||||||||||| || || ||||| | ||||||||||| ||||||||| Sbjct: 548 acagatgtcttttccaaccttccaagtttatcaacacttgatctctccttaaattctctt 607 Query: 462 actggtgacctaccagaaggtttaagttcactgtcaagtgttaaaactctatatttgcag 521 |||||||| || ||| || |||| | ||| |||||||| | |||||| | ||| ||||| Sbjct: 608 actggtgatctcccacaaagtttcacttctctgtcaagcctgaaaactttgtatctgcag 667 Query: 522 aacaatcagttgaccggttctatcaatgtcctagccaatcttcccctttctgatctgaat 581 ||||| || || || || || ||||||||||| || ||||||||||| | || | ||| Sbjct: 668 aacaaccaatttactggatcaatcaatgtccttgctaatcttcccctggataatttaaat 727 Query: 582 gttgcaaataatcgcttcactggttggattcctagtcaacttaagaagataaatagtcta 641 || | ||| || || || |||||||||||||||| | | || ||||| ||||||||||| Sbjct: 728 gtgggaaacaaccgttttactggttggattcctaatgagctaaagaaaataaatagtctt 787 Query: 642 cagactgatggtaattcttgga 663 || || ||||| |||||||||| Sbjct: 788 caaaccgatggcaattcttgga 809 Score = 113 bits (57), Expect = 8e-22 Identities = 165/201 (82%) Strand = Plus / Plus Query: 3 gacgccactgaccttactgccctcaacacgctcttcactagcttgaattctccggggcag 62 ||||||| ||| |||||| |||||| |||| ||||| ||| | ||||| ||||||||| Sbjct: 149 gacgccaatgatgttactgtcctcaatgcgctattcaccagcctcaattcgccggggcag 208 Query: 63 ctcaaaggctggcaagtgaatggtggtgacccttgcggcgaatcatggcagggcatcact 122 || || ||||| |||||||| |||||||| || |||| ||||||||||||||||| Sbjct: 209 ctgcgcggttggcaggtgaatggcggtgacccatgtggcgcctcatggcagggcatcacc 268 Query: 123 tgctcaggatcgtcggttacagcaatcaaattaccaagcttgggcctgtccgggaatttg 182 ||||| ||||| || || |||||||| ||||| || |||||||| || || |||||| || Sbjct: 269 tgctctggatcatcagtcacagcaattaaattgccgagcttggggctttcggggaatctg 328 Query: 183 ggctacaatatgaataccatg 203 | |||||||||||| |||||| Sbjct: 329 gcctacaatatgaacaccatg 349
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 137 bits (69), Expect = 5e-29 Identities = 117/133 (87%) Strand = Plus / Plus Query: 16 ttactgccctcaacacgctcttcactagcttgaattctccggggcagctcaaaggctggc 75 |||||| |||||| ||||||||||||||| ||||||||||||||||||||||||| |||| Sbjct: 4380244 ttactgtcctcaatacgctcttcactagcctgaattctccggggcagctcaaaggttggc 4380303 Query: 76 aagtgaatggtggtgacccttgcggcgaatcatggcagggcatcacttgctcaggatcgt 135 | | | |||||| |||||||| ||| ||||||||||||| ||||| ||||||||||| | Sbjct: 4380304 aggcaagtggtggagacccttgtggccaatcatggcagggtatcacgtgctcaggatcat 4380363 Query: 136 cggttacagcaat 148 | ||||| ||||| Sbjct: 4380364 cagttactgcaat 4380376 Score = 85.7 bits (43), Expect = 2e-13 Identities = 61/67 (91%) Strand = Plus / Plus Query: 578 gaatgttgcaaataatcgcttcactggttggattcctagtcaacttaagaagataaatag 637 |||||||||||| |||| |||||||| ||||||||||||||||||||||||||||| | Sbjct: 4381432 gaatgttgcaaacaatcatttcactggctggattcctagtcaacttaagaagataaacaa 4381491 Query: 638 tctacag 644 ||||||| Sbjct: 4381492 tctacag 4381498 Score = 79.8 bits (40), Expect = 1e-11 Identities = 58/64 (90%) Strand = Plus / Plus Query: 149 caaattaccaagcttgggcctgtccgggaatttgggctacaatatgaataccatgagttc 208 |||||||||||||||||| || ||||| ||||||| |||||||||||||||||| |||| Sbjct: 4380470 caaattaccaagcttggggctctccggtaatttggcgtacaatatgaataccatgggttc 4380529 Query: 209 attg 212 |||| Sbjct: 4380530 attg 4380533 Score = 71.9 bits (36), Expect = 3e-09 Identities = 63/72 (87%) Strand = Plus / Plus Query: 296 caatcttgcaggaaaccagtttggtggagagttgccctactcgattttctcgatgaataa 355 |||||| |||||||||||||| |||| | || ||||||||||||||||||||| ||| Sbjct: 4380781 caatctcgcaggaaaccagttcactggaaatttaccctactcgattttctcgatgtctaa 4380840 Query: 356 tcttaagtattt 367 |||||||||||| Sbjct: 4380841 tcttaagtattt 4380852 Score = 69.9 bits (35), Expect = 1e-08 Identities = 59/67 (88%) Strand = Plus / Plus Query: 578 gaatgttgcaaataatcgcttcactggttggattcctagtcaacttaagaagataaatag 637 |||||||||||| |||| |||||||| ||||||||||||||| |||||||| |||| | Sbjct: 4339162 gaatgttgcaaaaaatcatttcactggctggattcctagtcaaattaagaagttaaacaa 4339221 Query: 638 tctacag 644 ||||||| Sbjct: 4339222 tctacag 4339228 Score = 60.0 bits (30), Expect = 1e-05 Identities = 39/42 (92%) Strand = Plus / Plus Query: 440 ggatctctcctttaattctcttactggtgacctaccagaagg 481 |||||| ||||||||||||||| |||||||||||||| |||| Sbjct: 4381136 ggatctttcctttaattctcttgctggtgacctaccacaagg 4381177 Score = 60.0 bits (30), Expect = 1e-05 Identities = 63/74 (85%) Strand = Plus / Plus Query: 222 gatatgagccagaacagccttggtggtggacaagcgatacaatataatctccccacagct 281 ||||||||||| |||| |||||||||||| ||| |||||| || ||||| ||||| | Sbjct: 4380625 gatatgagccaaaacaaccttggtggtggccaacagatacagtacaatcttcccactaat 4380684 Query: 282 aagcttgagaggct 295 |||||||||||||| Sbjct: 4380685 aagcttgagaggct 4380698 Score = 54.0 bits (27), Expect = 6e-04 Identities = 57/67 (85%) Strand = Plus / Plus Query: 512 atatttgcagaacaatcagttgaccggttctatcaatgtcctagccaatcttcccctttc 571 |||| ||||||||||||| || || |||| |||||||||||| || ||||| |||||| Sbjct: 4381288 atatctgcagaacaatcaatttactggttatatcaatgtccttgctaatctcccccttga 4381347 Query: 572 tgatctg 578 ||||||| Sbjct: 4381348 tgatctg 4381354
>gb|AC079633.9|AC079633 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G08, from Chromosome 3, complete sequence Length = 122052 Score = 137 bits (69), Expect = 5e-29 Identities = 117/133 (87%) Strand = Plus / Minus Query: 16 ttactgccctcaacacgctcttcactagcttgaattctccggggcagctcaaaggctggc 75 |||||| |||||| ||||||||||||||| ||||||||||||||||||||||||| |||| Sbjct: 46253 ttactgtcctcaatacgctcttcactagcctgaattctccggggcagctcaaaggttggc 46194 Query: 76 aagtgaatggtggtgacccttgcggcgaatcatggcagggcatcacttgctcaggatcgt 135 | | | |||||| |||||||| ||| ||||||||||||| ||||| ||||||||||| | Sbjct: 46193 aggcaagtggtggagacccttgtggccaatcatggcagggtatcacgtgctcaggatcat 46134 Query: 136 cggttacagcaat 148 | ||||| ||||| Sbjct: 46133 cagttactgcaat 46121 Score = 85.7 bits (43), Expect = 2e-13 Identities = 61/67 (91%) Strand = Plus / Minus Query: 578 gaatgttgcaaataatcgcttcactggttggattcctagtcaacttaagaagataaatag 637 |||||||||||| |||| |||||||| ||||||||||||||||||||||||||||| | Sbjct: 45065 gaatgttgcaaacaatcatttcactggctggattcctagtcaacttaagaagataaacaa 45006 Query: 638 tctacag 644 ||||||| Sbjct: 45005 tctacag 44999 Score = 79.8 bits (40), Expect = 1e-11 Identities = 58/64 (90%) Strand = Plus / Minus Query: 149 caaattaccaagcttgggcctgtccgggaatttgggctacaatatgaataccatgagttc 208 |||||||||||||||||| || ||||| ||||||| |||||||||||||||||| |||| Sbjct: 46027 caaattaccaagcttggggctctccggtaatttggcgtacaatatgaataccatgggttc 45968 Query: 209 attg 212 |||| Sbjct: 45967 attg 45964 Score = 71.9 bits (36), Expect = 3e-09 Identities = 63/72 (87%) Strand = Plus / Minus Query: 296 caatcttgcaggaaaccagtttggtggagagttgccctactcgattttctcgatgaataa 355 |||||| |||||||||||||| |||| | || ||||||||||||||||||||| ||| Sbjct: 45716 caatctcgcaggaaaccagttcactggaaatttaccctactcgattttctcgatgtctaa 45657 Query: 356 tcttaagtattt 367 |||||||||||| Sbjct: 45656 tcttaagtattt 45645 Score = 69.9 bits (35), Expect = 1e-08 Identities = 59/67 (88%) Strand = Plus / Minus Query: 578 gaatgttgcaaataatcgcttcactggttggattcctagtcaacttaagaagataaatag 637 |||||||||||| |||| |||||||| ||||||||||||||| |||||||| |||| | Sbjct: 87335 gaatgttgcaaaaaatcatttcactggctggattcctagtcaaattaagaagttaaacaa 87276 Query: 638 tctacag 644 ||||||| Sbjct: 87275 tctacag 87269 Score = 60.0 bits (30), Expect = 1e-05 Identities = 63/74 (85%) Strand = Plus / Minus Query: 222 gatatgagccagaacagccttggtggtggacaagcgatacaatataatctccccacagct 281 ||||||||||| |||| |||||||||||| ||| |||||| || ||||| ||||| | Sbjct: 45872 gatatgagccaaaacaaccttggtggtggccaacagatacagtacaatcttcccactaat 45813 Query: 282 aagcttgagaggct 295 |||||||||||||| Sbjct: 45812 aagcttgagaggct 45799 Score = 60.0 bits (30), Expect = 1e-05 Identities = 39/42 (92%) Strand = Plus / Minus Query: 440 ggatctctcctttaattctcttactggtgacctaccagaagg 481 |||||| ||||||||||||||| |||||||||||||| |||| Sbjct: 45361 ggatctttcctttaattctcttgctggtgacctaccacaagg 45320 Score = 54.0 bits (27), Expect = 6e-04 Identities = 57/67 (85%) Strand = Plus / Minus Query: 512 atatttgcagaacaatcagttgaccggttctatcaatgtcctagccaatcttcccctttc 571 |||| ||||||||||||| || || |||| |||||||||||| || ||||| |||||| Sbjct: 45209 atatctgcagaacaatcaatttactggttatatcaatgtccttgctaatctcccccttga 45150 Query: 572 tgatctg 578 ||||||| Sbjct: 45149 tgatctg 45143
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 137 bits (69), Expect = 5e-29 Identities = 117/133 (87%) Strand = Plus / Plus Query: 16 ttactgccctcaacacgctcttcactagcttgaattctccggggcagctcaaaggctggc 75 |||||| |||||| ||||||||||||||| ||||||||||||||||||||||||| |||| Sbjct: 4380359 ttactgtcctcaatacgctcttcactagcctgaattctccggggcagctcaaaggttggc 4380418 Query: 76 aagtgaatggtggtgacccttgcggcgaatcatggcagggcatcacttgctcaggatcgt 135 | | | |||||| |||||||| ||| ||||||||||||| ||||| ||||||||||| | Sbjct: 4380419 aggcaagtggtggagacccttgtggccaatcatggcagggtatcacgtgctcaggatcat 4380478 Query: 136 cggttacagcaat 148 | ||||| ||||| Sbjct: 4380479 cagttactgcaat 4380491 Score = 85.7 bits (43), Expect = 2e-13 Identities = 61/67 (91%) Strand = Plus / Plus Query: 578 gaatgttgcaaataatcgcttcactggttggattcctagtcaacttaagaagataaatag 637 |||||||||||| |||| |||||||| ||||||||||||||||||||||||||||| | Sbjct: 4381547 gaatgttgcaaacaatcatttcactggctggattcctagtcaacttaagaagataaacaa 4381606 Query: 638 tctacag 644 ||||||| Sbjct: 4381607 tctacag 4381613 Score = 79.8 bits (40), Expect = 1e-11 Identities = 58/64 (90%) Strand = Plus / Plus Query: 149 caaattaccaagcttgggcctgtccgggaatttgggctacaatatgaataccatgagttc 208 |||||||||||||||||| || ||||| ||||||| |||||||||||||||||| |||| Sbjct: 4380585 caaattaccaagcttggggctctccggtaatttggcgtacaatatgaataccatgggttc 4380644 Query: 209 attg 212 |||| Sbjct: 4380645 attg 4380648 Score = 71.9 bits (36), Expect = 3e-09 Identities = 63/72 (87%) Strand = Plus / Plus Query: 296 caatcttgcaggaaaccagtttggtggagagttgccctactcgattttctcgatgaataa 355 |||||| |||||||||||||| |||| | || ||||||||||||||||||||| ||| Sbjct: 4380896 caatctcgcaggaaaccagttcactggaaatttaccctactcgattttctcgatgtctaa 4380955 Query: 356 tcttaagtattt 367 |||||||||||| Sbjct: 4380956 tcttaagtattt 4380967 Score = 69.9 bits (35), Expect = 1e-08 Identities = 59/67 (88%) Strand = Plus / Plus Query: 578 gaatgttgcaaataatcgcttcactggttggattcctagtcaacttaagaagataaatag 637 |||||||||||| |||| |||||||| ||||||||||||||| |||||||| |||| | Sbjct: 4339277 gaatgttgcaaaaaatcatttcactggctggattcctagtcaaattaagaagttaaacaa 4339336 Query: 638 tctacag 644 ||||||| Sbjct: 4339337 tctacag 4339343 Score = 60.0 bits (30), Expect = 1e-05 Identities = 39/42 (92%) Strand = Plus / Plus Query: 440 ggatctctcctttaattctcttactggtgacctaccagaagg 481 |||||| ||||||||||||||| |||||||||||||| |||| Sbjct: 4381251 ggatctttcctttaattctcttgctggtgacctaccacaagg 4381292 Score = 60.0 bits (30), Expect = 1e-05 Identities = 63/74 (85%) Strand = Plus / Plus Query: 222 gatatgagccagaacagccttggtggtggacaagcgatacaatataatctccccacagct 281 ||||||||||| |||| |||||||||||| ||| |||||| || ||||| ||||| | Sbjct: 4380740 gatatgagccaaaacaaccttggtggtggccaacagatacagtacaatcttcccactaat 4380799 Query: 282 aagcttgagaggct 295 |||||||||||||| Sbjct: 4380800 aagcttgagaggct 4380813 Score = 54.0 bits (27), Expect = 6e-04 Identities = 57/67 (85%) Strand = Plus / Plus Query: 512 atatttgcagaacaatcagttgaccggttctatcaatgtcctagccaatcttcccctttc 571 |||| ||||||||||||| || || |||| |||||||||||| || ||||| |||||| Sbjct: 4381403 atatctgcagaacaatcaatttactggttatatcaatgtccttgctaatctcccccttga 4381462 Query: 572 tgatctg 578 ||||||| Sbjct: 4381463 tgatctg 4381469
>ref|NM_196278.1| Oryza sativa (japonica cultivar-group) putative leucine-rich repeat transmembrane protein kinase 1 (OSJNBb0061I18.16), mRNA Length = 2211 Score = 113 bits (57), Expect = 8e-22 Identities = 165/201 (82%) Strand = Plus / Plus Query: 3 gacgccactgaccttactgccctcaacacgctcttcactagcttgaattctccggggcag 62 ||||||| ||| |||||| |||||| |||| ||||| ||| | ||||| ||||||||| Sbjct: 88 gacgccaatgatgttactgtcctcaatgcgctattcaccagcctcaattcgccggggcag 147 Query: 63 ctcaaaggctggcaagtgaatggtggtgacccttgcggcgaatcatggcagggcatcact 122 || || ||||| |||||||| |||||||| || |||| ||||||||||||||||| Sbjct: 148 ctgcgcggttggcaggtgaatggcggtgacccatgtggcgcctcatggcagggcatcacc 207 Query: 123 tgctcaggatcgtcggttacagcaatcaaattaccaagcttgggcctgtccgggaatttg 182 ||||| ||||| || || |||||||| ||||| || |||||||| || || |||||| || Sbjct: 208 tgctctggatcatcagtcacagcaattaaattgccgagcttggggctttcggggaatctg 267 Query: 183 ggctacaatatgaataccatg 203 | |||||||||||| |||||| Sbjct: 268 gcctacaatatgaacaccatg 288 Score = 97.6 bits (49), Expect = 5e-17 Identities = 118/141 (83%) Strand = Plus / Plus Query: 282 aagcttgagaggctcaatcttgcaggaaaccagtttggtggagagttgccctactcgatt 341 ||||||||||||||||||||||| || |||||||||| |||| | |||| ||||| ||| Sbjct: 367 aagcttgagaggctcaatcttgctgggaaccagtttgctggaaatgtgccatactcaatt 426 Query: 342 ttctcgatgaataatcttaagtatttaaatattaaccataaccagttacaaggaaaaatg 401 | | | ||| ||| ||||||||| |||| |||| |||||||| ||||||||||| ||| Sbjct: 427 tccacaatgcctaaacttaagtatctaaaccttaatcataaccaattacaaggaaatatg 486 Query: 402 accgacgtattttccaacctt 422 || || || |||||||||||| Sbjct: 487 acagatgtcttttccaacctt 507 Score = 61.9 bits (31), Expect = 2e-06 Identities = 118/147 (80%) Strand = Plus / Plus Query: 517 tgcagaacaatcagttgaccggttctatcaatgtcctagccaatcttcccctttctgatc 576 |||||||||| || || || || || ||||||||||| || ||||||||||| | || Sbjct: 530 tgcagaacaaccaatttactggatcaatcaatgtccttgctaatcttcccctggataatt 589 Query: 577 tgaatgttgcaaataatcgcttcactggttggattcctagtcaacttaagaagataaata 636 | ||||| | ||| || || || |||||||||||||||| | | || ||||| ||||||| Sbjct: 590 taaatgtgggaaacaaccgttttactggttggattcctaatgagctaaagaaaataaata 649 Query: 637 gtctacagactgatggtaattcttgga 663 |||| || || ||||| |||||||||| Sbjct: 650 gtcttcaaaccgatggcaattcttgga 676
>dbj|AK112046.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-C09, full insert sequence Length = 1721 Score = 95.6 bits (48), Expect = 2e-16 Identities = 75/84 (89%) Strand = Plus / Plus Query: 580 atgttgcaaataatcgcttcactggttggattcctagtcaacttaagaagataaatagtc 639 |||||||||| |||| |||||||| ||||||||||||||||||||||||||||| | || Sbjct: 1 atgttgcaaacaatcatttcactggctggattcctagtcaacttaagaagataaacaatc 60 Query: 640 tacagactgatggtaattcttgga 663 |||| ||||| || |||||||||| Sbjct: 61 tacaaactgacggaaattcttgga 84
>gb|AC079936.7| Oryza sativa (japonica cultivar-group) chromosome X clone OSJNBb0061I18, complete sequence Length = 143163 Score = 73.8 bits (37), Expect = 7e-10 Identities = 109/133 (81%) Strand = Plus / Plus Query: 16 ttactgccctcaacacgctcttcactagcttgaattctccggggcagctcaaaggctggc 75 |||||| |||||| |||| ||||| ||| | ||||| ||||||||||| || |||| Sbjct: 93512 ttactgtcctcaatgcgctattcaccagcctcaattcgccggggcagctgcgcggttggc 93571 Query: 76 aagtgaatggtggtgacccttgcggcgaatcatggcagggcatcacttgctcaggatcgt 135 | |||||||| |||||||| || |||| ||||||||||||||||| ||||| ||||| | Sbjct: 93572 aggtgaatggcggtgacccatgtggcgcctcatggcagggcatcacctgctctggatcat 93631 Query: 136 cggttacagcaat 148 | || |||||||| Sbjct: 93632 cagtcacagcaat 93644 Score = 54.0 bits (27), Expect = 6e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 441 gatctctcctttaattctcttactggtgacctaccagaaggtttaagttcactgtcaag 499 ||||||||||| ||||||||||||||||| || ||| || |||| | ||| |||||||| Sbjct: 94458 gatctctccttaaattctcttactggtgatctcccacaaagtttcacttctctgtcaag 94516 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 373 ttaaccataaccagttacaaggaaaaatgaccgacgtattttccaacctt 422 |||| |||||||| ||||||||||| ||||| || || |||||||||||| Sbjct: 94254 ttaatcataaccaattacaaggaaatatgacagatgtcttttccaacctt 94303 Score = 44.1 bits (22), Expect = 0.58 Identities = 46/54 (85%) Strand = Plus / Plus Query: 150 aaattaccaagcttgggcctgtccgggaatttgggctacaatatgaataccatg 203 ||||| || |||||||| || || |||||| ||| |||||||||||| |||||| Sbjct: 93738 aaattgccgagcttggggctttcggggaatctggcctacaatatgaacaccatg 93791 Score = 42.1 bits (21), Expect = 2.3 Identities = 36/41 (87%) Strand = Plus / Plus Query: 600 actggttggattcctagtcaacttaagaagataaatagtct 640 |||||||||||||||| | | || ||||| ||||||||||| Sbjct: 94773 actggttggattcctaatgagctaaagaaaataaatagtct 94813 Score = 40.1 bits (20), Expect = 9.1 Identities = 44/52 (84%) Strand = Plus / Plus Query: 517 tgcagaacaatcagttgaccggttctatcaatgtcctagccaatcttcccct 568 |||||||||| || || || || || ||||||||||| || ||||||||||| Sbjct: 94609 tgcagaacaaccaatttactggatcaatcaatgtccttgctaatcttcccct 94660
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 73.8 bits (37), Expect = 7e-10 Identities = 109/133 (81%) Strand = Plus / Minus Query: 16 ttactgccctcaacacgctcttcactagcttgaattctccggggcagctcaaaggctggc 75 |||||| |||||| |||| ||||| ||| | ||||| ||||||||||| || |||| Sbjct: 12410663 ttactgtcctcaatgcgctattcaccagcctcaattcgccggggcagctgcgcggttggc 12410604 Query: 76 aagtgaatggtggtgacccttgcggcgaatcatggcagggcatcacttgctcaggatcgt 135 | |||||||| |||||||| || |||| ||||||||||||||||| ||||| ||||| | Sbjct: 12410603 aggtgaatggcggtgacccatgtggcgcctcatggcagggcatcacctgctctggatcat 12410544 Query: 136 cggttacagcaat 148 | || |||||||| Sbjct: 12410543 cagtcacagcaat 12410531 Score = 54.0 bits (27), Expect = 6e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 441 gatctctcctttaattctcttactggtgacctaccagaaggtttaagttcactgtcaag 499 ||||||||||| ||||||||||||||||| || ||| || |||| | ||| |||||||| Sbjct: 12409717 gatctctccttaaattctcttactggtgatctcccacaaagtttcacttctctgtcaag 12409659 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 373 ttaaccataaccagttacaaggaaaaatgaccgacgtattttccaacctt 422 |||| |||||||| ||||||||||| ||||| || || |||||||||||| Sbjct: 12409921 ttaatcataaccaattacaaggaaatatgacagatgtcttttccaacctt 12409872 Score = 44.1 bits (22), Expect = 0.58 Identities = 46/54 (85%) Strand = Plus / Minus Query: 150 aaattaccaagcttgggcctgtccgggaatttgggctacaatatgaataccatg 203 ||||| || |||||||| || || |||||| ||| |||||||||||| |||||| Sbjct: 12410437 aaattgccgagcttggggctttcggggaatctggcctacaatatgaacaccatg 12410384 Score = 42.1 bits (21), Expect = 2.3 Identities = 36/41 (87%) Strand = Plus / Minus Query: 600 actggttggattcctagtcaacttaagaagataaatagtct 640 |||||||||||||||| | | || ||||| ||||||||||| Sbjct: 12409402 actggttggattcctaatgagctaaagaaaataaatagtct 12409362 Score = 40.1 bits (20), Expect = 9.1 Identities = 44/52 (84%) Strand = Plus / Minus Query: 517 tgcagaacaatcagttgaccggttctatcaatgtcctagccaatcttcccct 568 |||||||||| || || || || || ||||||||||| || ||||||||||| Sbjct: 12409566 tgcagaacaaccaatttactggatcaatcaatgtccttgctaatcttcccct 12409515
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 73.8 bits (37), Expect = 7e-10 Identities = 109/133 (81%) Strand = Plus / Minus Query: 16 ttactgccctcaacacgctcttcactagcttgaattctccggggcagctcaaaggctggc 75 |||||| |||||| |||| ||||| ||| | ||||| ||||||||||| || |||| Sbjct: 12418003 ttactgtcctcaatgcgctattcaccagcctcaattcgccggggcagctgcgcggttggc 12417944 Query: 76 aagtgaatggtggtgacccttgcggcgaatcatggcagggcatcacttgctcaggatcgt 135 | |||||||| |||||||| || |||| ||||||||||||||||| ||||| ||||| | Sbjct: 12417943 aggtgaatggcggtgacccatgtggcgcctcatggcagggcatcacctgctctggatcat 12417884 Query: 136 cggttacagcaat 148 | || |||||||| Sbjct: 12417883 cagtcacagcaat 12417871 Score = 54.0 bits (27), Expect = 6e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 441 gatctctcctttaattctcttactggtgacctaccagaaggtttaagttcactgtcaag 499 ||||||||||| ||||||||||||||||| || ||| || |||| | ||| |||||||| Sbjct: 12417057 gatctctccttaaattctcttactggtgatctcccacaaagtttcacttctctgtcaag 12416999 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 373 ttaaccataaccagttacaaggaaaaatgaccgacgtattttccaacctt 422 |||| |||||||| ||||||||||| ||||| || || |||||||||||| Sbjct: 12417261 ttaatcataaccaattacaaggaaatatgacagatgtcttttccaacctt 12417212 Score = 44.1 bits (22), Expect = 0.58 Identities = 46/54 (85%) Strand = Plus / Minus Query: 150 aaattaccaagcttgggcctgtccgggaatttgggctacaatatgaataccatg 203 ||||| || |||||||| || || |||||| ||| |||||||||||| |||||| Sbjct: 12417777 aaattgccgagcttggggctttcggggaatctggcctacaatatgaacaccatg 12417724 Score = 42.1 bits (21), Expect = 2.3 Identities = 36/41 (87%) Strand = Plus / Minus Query: 600 actggttggattcctagtcaacttaagaagataaatagtct 640 |||||||||||||||| | | || ||||| ||||||||||| Sbjct: 12416742 actggttggattcctaatgagctaaagaaaataaatagtct 12416702 Score = 40.1 bits (20), Expect = 9.1 Identities = 44/52 (84%) Strand = Plus / Minus Query: 517 tgcagaacaatcagttgaccggttctatcaatgtcctagccaatcttcccct 568 |||||||||| || || || || || ||||||||||| || ||||||||||| Sbjct: 12416906 tgcagaacaaccaatttactggatcaatcaatgtccttgctaatcttcccct 12416855
>dbj|AP006733.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT02K14, TM0918b, complete sequence Length = 41851 Score = 50.1 bits (25), Expect = 0.009 Identities = 31/33 (93%) Strand = Plus / Plus Query: 440 ggatctctcctttaattctcttactggtgacct 472 ||||||||| ||||||||||| ||||||||||| Sbjct: 33636 ggatctctcttttaattctctgactggtgacct 33668
>gb|AC158791.4| Mus musculus chromosome 1, clone RP23-247C6, complete sequence Length = 218755 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 188 caatatgaataccatgagttc 208 ||||||||||||||||||||| Sbjct: 65285 caatatgaataccatgagttc 65265
>gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 4, complete sequence Length = 1783081 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 14 ccttactgccctcaacacgctcttc 38 ||||||||||||||||| ||||||| Sbjct: 1035064 ccttactgccctcaacatgctcttc 1035088
>ref|XM_570189.1| Cryptococcus neoformans var. neoformans JEC21 aldo-keto reductase (CND03740) partial mRNA Length = 1350 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 14 ccttactgccctcaacacgctcttc 38 ||||||||||||||||| ||||||| Sbjct: 856 ccttactgccctcaacatgctcttc 880
>gb|AC109240.30| Mus musculus chromosome 1, clone RP23-445I23, complete sequence Length = 189545 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 188 caatatgaataccatgagttc 208 ||||||||||||||||||||| Sbjct: 72918 caatatgaataccatgagttc 72938
>emb|AL049613.2|HS231N13 Human DNA sequence from clone RP1-231N13 on chromosome 6q22, complete sequence Length = 120000 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 364 atttaaatattaaccataaccagtt 388 |||||||| |||||||||||||||| Sbjct: 30533 atttaaatgttaaccataaccagtt 30509
>gb|AC100500.10| Mus musculus chromosome 3, clone RP23-143I10, complete sequence Length = 179369 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 633 aatagtctacagactgatgg 652 |||||||||||||||||||| Sbjct: 81238 aatagtctacagactgatgg 81257
>gb|AC103399.9| Mus musculus chromosome 3, clone RP23-310N18, complete sequence Length = 154918 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 633 aatagtctacagactgatgg 652 |||||||||||||||||||| Sbjct: 19947 aatagtctacagactgatgg 19928
>gb|AC123075.5| Mus musculus BAC clone RP23-181C16 from chromosome 3, complete sequence Length = 198063 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 615 agtcaacttaagaagataaa 634 |||||||||||||||||||| Sbjct: 60098 agtcaacttaagaagataaa 60117
>gb|AC104102.4| Mus musculus BAC clone RP24-377I13 from 15, complete sequence Length = 187284 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 ttaagtatttaaatattaac 377 |||||||||||||||||||| Sbjct: 51662 ttaagtatttaaatattaac 51643
>gb|AY838879.1| Borrelia hermsii plasmid lp28, partial sequence Length = 11667 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 caatcaaattaccaagcttg 164 |||||||||||||||||||| Sbjct: 2675 caatcaaattaccaagcttg 2656
>emb|AL713969.11| Human DNA sequence from clone RP11-501I17 on chromosome 10 Contains a CpG island, complete sequence Length = 84574 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 508 ctctatatttgcagaacaat 527 |||||||||||||||||||| Sbjct: 66826 ctctatatttgcagaacaat 66807
>emb|AL646090.5| Human DNA sequence from clone RP11-542F9 on chromosome 6 Contains a novel gene, complete sequence Length = 88711 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 642 cagactgatggtaattcttg 661 |||||||||||||||||||| Sbjct: 48256 cagactgatggtaattcttg 48275
>emb|AL583826.16| Human DNA sequence from clone RP11-434B7 on chromosome 1 Contains the 3' end of the RPS6KC1 gene for ribosomal protein S6 kinase 52kDa polypeptide 1, complete sequence Length = 122208 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 363 tatttaaatattaaccataa 382 |||||||||||||||||||| Sbjct: 9011 tatttaaatattaaccataa 8992
>emb|AL513479.12| Human DNA sequence from clone RP11-329N22 on chromosome 1, complete sequence Length = 193826 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 554 agccaatcttcccctttctg 573 |||||||||||||||||||| Sbjct: 162261 agccaatcttcccctttctg 162242
>emb|X00734.1|HSREP10 Human beta-tubulin gene (5-beta) with ten Alu family members Length = 8874 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 559 atcttcccctttctgatctg 578 |||||||||||||||||||| Sbjct: 4352 atcttcccctttctgatctg 4333
>emb|BX088553.4| Mouse DNA sequence from clone RP23-115D24 on chromosome 4, complete sequence Length = 148581 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 ggcatcacttgctcaggatc 133 |||||||||||||||||||| Sbjct: 40466 ggcatcacttgctcaggatc 40447
>gb|AC009379.7| Drosophila melanogaster 3L BAC RP98-48M6 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 175963 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 307 gaaaccagtttggtggagagttgc 330 |||||||||||||||| ||||||| Sbjct: 71147 gaaaccagtttggtggggagttgc 71170
>gb|AC009378.7| Drosophila melanogaster 3L BAC RP98-9E8 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 180387 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 307 gaaaccagtttggtggagagttgc 330 |||||||||||||||| ||||||| Sbjct: 39142 gaaaccagtttggtggggagttgc 39119
>dbj|AK137016.1| Mus musculus 12 days embryo embryonic body between diaphragm region and neck cDNA, RIKEN full-length enriched library, clone:9430040D17 product:hypothetical protein, full insert sequence Length = 3274 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 595 gcttcactggttggattcct 614 |||||||||||||||||||| Sbjct: 1497 gcttcactggttggattcct 1516
>dbj|AK137868.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130030K15 product:jumonji domain containing 2C, full insert sequence Length = 6585 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 ggcatcacttgctcaggatc 133 |||||||||||||||||||| Sbjct: 2664 ggcatcacttgctcaggatc 2645
>gb|AC155273.3| Mus musculus BAC clone RP23-36K2 from chromosome 12, complete sequence Length = 198927 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 595 gcttcactggttggattcct 614 |||||||||||||||||||| Sbjct: 140161 gcttcactggttggattcct 140180
>emb|AL929345.15| Zebrafish DNA sequence from clone DKEY-211H10 in linkage group 23, complete sequence Length = 222615 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 348 atgaataatcttaagtattt 367 |||||||||||||||||||| Sbjct: 160066 atgaataatcttaagtattt 160047
>gb|AC114736.4| Homo sapiens BAC clone CTD-2037B7 from 4, complete sequence Length = 81665 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 631 taaatagtctacagactgat 650 |||||||||||||||||||| Sbjct: 49215 taaatagtctacagactgat 49234
>gb|AC007849.24| Homo sapiens 3 BAC RP11-3K16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 199835 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 363 tatttaaatattaaccataa 382 |||||||||||||||||||| Sbjct: 125473 tatttaaatattaaccataa 125492
>emb|BX005335.9| Zebrafish DNA sequence from clone DKEY-240N8, complete sequence Length = 211094 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 cttaagtatttaaatattaa 376 |||||||||||||||||||| Sbjct: 1742 cttaagtatttaaatattaa 1723
>gb|AC006840.17|AC006840 Homo sapiens chromosome 4 clone C0422C23, complete sequence Length = 201657 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 631 taaatagtctacagactgat 650 |||||||||||||||||||| Sbjct: 12194 taaatagtctacagactgat 12175
>gb|AC154438.2| Mus musculus BAC clone RP23-178P20 from 16, complete sequence Length = 213575 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 363 tatttaaatattaaccataa 382 |||||||||||||||||||| Sbjct: 198157 tatttaaatattaaccataa 198138
>gb|AC122529.5| Mus musculus BAC clone RP24-511F2 from 3, complete sequence Length = 159294 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 615 agtcaacttaagaagataaa 634 |||||||||||||||||||| Sbjct: 156695 agtcaacttaagaagataaa 156714
>emb|AL954838.14| Zebrafish DNA sequence from clone DKEY-12B15 in linkage group 23, complete sequence Length = 268324 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 348 atgaataatcttaagtattt 367 |||||||||||||||||||| Sbjct: 163111 atgaataatcttaagtattt 163092
>gb|AE003518.3| Drosophila melanogaster chromosome 3L, section 67 of 83 of the complete sequence Length = 279088 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 307 gaaaccagtttggtggagagttgc 330 |||||||||||||||| ||||||| Sbjct: 218622 gaaaccagtttggtggggagttgc 218599
>gb|AC006216.1|F5F19 Arabidopsis thaliana chromosome 1 BAC F5F19 sequence, complete sequence Length = 110893 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 aatcttgcaggaaaccagtt 316 |||||||||||||||||||| Sbjct: 15438 aatcttgcaggaaaccagtt 15419
>emb|AJ890364.1| Emiliania huxleyi virus 86 isolate EhV86 Length = 407339 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 ttaagtatttaaatattaac 377 |||||||||||||||||||| Sbjct: 379316 ttaagtatttaaatattaac 379335
>emb|X82259.1|HSBM40DNA H.sapiens BM-40 gene Length = 2313 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 515 tttgcagaacaatcagttga 534 |||||||||||||||||||| Sbjct: 1942 tttgcagaacaatcagttga 1961 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,628,255 Number of Sequences: 3902068 Number of extensions: 5628255 Number of successful extensions: 133466 Number of sequences better than 10.0: 50 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 133149 Number of HSP's gapped (non-prelim): 306 length of query: 666 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 643 effective length of database: 17,143,297,704 effective search space: 11023140423672 effective search space used: 11023140423672 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)