Clone Information

BLAST Search Result

Clone Name	basd22k10
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	TIG_MYCMS (Q6MTF5) Trigger factor (TF)	35	0.13
2	NED4L_HUMAN (Q96PU5) E3 ubiquitin-protein ligase NEDD4-like prot...	34	0.39
3	NCOR1_XENLA (Q8QG78) Nuclear receptor corepressor 1 (N-CoR1) (N-...	34	0.39
4	CO1A2_CHICK (P02467) Collagen alpha-2(I) chain precursor (Fragme...	33	0.67
5	CD6_MOUSE (Q61003) T-cell differentiation antigen CD6 precursor	33	0.67
6	NCOR1_XENTR (Q4KKX4) Nuclear receptor corepressor 1 (N-CoR1) (N-...	33	0.87
7	VGP3_EBVP3 (P68344) Envelope glycoprotein GP340 (Membrane antige...	32	1.1
8	VGP3_EBVA8 (P68343) Envelope glycoprotein GP340 (Membrane antige...	32	1.1
9	KISSR_HUMAN (Q969F8) KiSS-1 receptor (KiSS-1R) (Kisspeptins rece...	32	1.5
10	OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)	32	1.5
11	MRP_RABIT (P35566) MARCKS-related protein (MARCKS-like protein 1...	32	1.5
12	DPO3B_MYCPA (Q9L7L6) DNA polymerase III beta subunit (EC 2.7.7.7)	32	1.5
13	DPO3B_MYCTU (Q50790) DNA polymerase III beta subunit (EC 2.7.7.7)	32	1.5
14	DPO3B_MYCBO (O33914) DNA polymerase III beta subunit (EC 2.7.7.7)	32	1.5
15	UNC37_CAEEL (O02482) Transcription factor unc-37 (Uncoordinated ...	32	1.5
16	MYOZ1_BOVIN (Q8SQ24) Myozenin-1 (Calsarcin-2)	32	1.9
17	MRP_HUMAN (P49006) MARCKS-related protein (MARCKS-like protein 1...	32	1.9
18	APBA3_HUMAN (O96018) Amyloid beta A4 precursor protein-binding f...	31	3.3
19	TRBB_RHISN (P55395) Probable conjugal transfer protein trbB	30	4.3
20	SER1_GALME (O96614) Sericin-1 (Silk gum protein 1) (Fragment)	30	4.3
21	ASPP2_MOUSE (Q8CG79) Apoptosis-stimulating of p53 protein 2 (Tum...	30	4.3
22	ATI_COWPX (P16602) A-type inclusion protein (ATI)	30	5.7
23	SYE1_HELHP (Q7VHN8) Glutamyl-tRNA synthetase 1 (EC 6.1.1.17) (Gl...	30	5.7
24	CO1A2_MOUSE (Q01149) Collagen alpha-2(I) chain precursor	30	5.7
25	AMOH_ARTGO (Q59118) Histamine oxidase (EC 1.4.3.6) (Copper amine...	30	5.7
26	DPO3B_MYCSM (P52851) DNA polymerase III beta subunit (EC 2.7.7.7)	30	5.7
27	BSC5_YEAST (P53755) Bypass of stop codon protein 5	30	5.7
28	UBXD3_MOUSE (Q8BG34) UBX domain-containing protein 3	30	5.7
29	B2L13_HUMAN (Q9BXK5) Bcl-2-like 13 protein (Mil1 protein) (Bcl-r...	30	5.7
30	UL09_HCMVA (P16745) Hypothetical protein UL9 precursor	30	5.7
31	FABH_RHIME (Q92QT4) 3-oxoacyl-[acyl-carrier-protein] synthase 3 ...	30	5.7
32	LIPS_MOUSE (P54310) Hormone-sensitive lipase (EC 3.1.1.79) (HSL)	30	7.4
33	DSPP_HUMAN (Q9NZW4) Dentin sialophosphoprotein precursor [Contai...	30	7.4
34	SMAD9_HUMAN (O15198) Mothers against decapentaplegic homolog 9 (...	30	7.4
35	SUHB_NEIMB (Q9JZ07) Inositol-1-monophosphatase (EC 3.1.3.25) (IM...	30	7.4
36	SUHB_NEIMA (Q9JU03) Inositol-1-monophosphatase (EC 3.1.3.25) (IM...	30	7.4
37	FABH_AGRT5 (Q8UG62) 3-oxoacyl-[acyl-carrier-protein] synthase 3 ...	30	7.4
38	TYPA_HELPY (O25225) GTP-binding protein TypA/BipA homolog	29	9.7
39	HP1_DROVI (P29227) Heterochromatin protein 1 (HP1)	29	9.7
40	SEC73_SCHPO (O13817) Protein transport protein sec73	29	9.7
41	ILVD_BURPS (Q63WB9) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)	29	9.7
42	ILVD_BURP1 (Q3JV12) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)	29	9.7
43	ILVD_BURMA (Q62LG7) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)	29	9.7
44	ATI_CAMPS (Q775Q2) A-type inclusion protein (ATI)	29	9.7
45	ATI_CAMPM (Q8V2M9) A-type inclusion protein (ATI)	29	9.7
46	ATI_CAMPC (Q05482) A-type inclusion protein (ATI)	29	9.7
47	RS17_ICTPU (Q90YQ6) 40S ribosomal protein S17	29	9.7
48	RADC_ENTFA (Q82ZX1) DNA repair protein radC homolog	29	9.7
49	RS17_RAT (P04644) 40S ribosomal protein S17	29	9.7
50	RS17_PIG (Q6QAP7) 40S ribosomal protein S17	29	9.7
51	RS17_MOUSE (P63276) 40S ribosomal protein S17	29	9.7
52	RS17_HUMAN (P08708) 40S ribosomal protein S17	29	9.7
53	RS17_FELCA (P63275) 40S ribosomal protein S17	29	9.7
54	RS17_CRIGR (P63274) 40S ribosomal protein S17	29	9.7
55	RS17_COTJA (Q7ZUB2) 40S ribosomal protein S17	29	9.7
56	RS17_CHICK (P08636) 40S ribosomal protein S17	29	9.7
57	RS17_CANFA (P63273) 40S ribosomal protein S17	29	9.7
58	TIP_PLAYO (Q7RRM4) T-cell immunomodulatory protein homolog precu...	29	9.7

>TIG_MYCMS (Q6MTF5) Trigger factor (TF)|
          Length = 428

 Score = 35.4 bits (80), Expect = 0.13
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 12/71 (16%)
 Frame = +3

Query: 396 FEWVRHLDDGSVKFIEGARQPVYLVTADDVDNLLAI--------EVQPLDDRKRKGDIV- 548
           F+ V  L  G  K I   ++PV  V  +DVDN++ +        + +  DD+ +KGDIV 
Sbjct: 111 FDLVLELKVGEYKNITTVKKPVVEVNQEDVDNVIDMYRSRFAMQKEKQADDQIQKGDIVT 170

Query: 549 ---KVYANDQA 572
              K Y +DQA
Sbjct: 171 FDFKGYVDDQA 181

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>NED4L_HUMAN (Q96PU5) E3 ubiquitin-protein ligase NEDD4-like protein (EC|
           6.3.2.-) (Nedd4-2) (NEDD4.2)
          Length = 975

 Score = 33.9 bits (76), Expect = 0.39
 Identities = 41/152 (26%), Positives = 59/152 (38%), Gaps = 11/152 (7%)
 Frame = +3

Query: 135 AEDHHVPEPSAQWGSGDSPNLESGLEEANPSYPYLPTVPEEP-GSSFSEAAEDDPLPCIE 311
           AE  H+P PSA  G   S  +  G EE  PS  Y+ T P  P G    + A+        
Sbjct: 348 AEQGHLPPPSAPAGRARSSTVTGG-EEPTPSVAYVHTTPGLPSGWEERKDAKGRTYYVNH 406

Query: 312 GLRITGEAFPGRELQASGFSTNGTTSCN------FEWVRHLDDGSVKF---IEGAR-QPV 461
             R T    P  +L   G S + T S N          R L   +V     +EGA+  PV
Sbjct: 407 NNRTTTWTRPIMQLAEDGASGSATNSNNHLIEPQIRRPRSLSSPTVTLSAPLEGAKDSPV 466

Query: 462 YLVTADDVDNLLAIEVQPLDDRKRKGDIVKVY 557
                D + N  + +  P +  K +  + + +
Sbjct: 467 RRAVKDTLSNPQSPQPSPYNSPKPQHKVTQSF 498

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>NCOR1_XENLA (Q8QG78) Nuclear receptor corepressor 1 (N-CoR1) (N-CoR) (xN-CoR)|
          Length = 2498

 Score = 33.9 bits (76), Expect = 0.39
 Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
 Frame = +3

Query: 12   DVPAQASQRDADAVQFDFATRNSSLPLEGISRRYVL---DDSVGAEDHHVPEPSAQWGSG 182
            ++PA  +     +    FA   S+L LE I R+ ++   DD   +EDH V     Q    
Sbjct: 2300 NLPAVTTSGAISSRGHSFADPASNLGLEDIIRKALMGNFDDK--SEDHGVLVGVPQGNQS 2357

Query: 183  DSPNLESGLEEANPS 227
             +PN E+  EEANPS
Sbjct: 2358 GTPNSEARREEANPS 2372

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>CO1A2_CHICK (P02467) Collagen alpha-2(I) chain precursor (Fragments)|
          Length = 1362

 Score = 33.1 bits (74), Expect = 0.67
 Identities = 25/72 (34%), Positives = 28/72 (38%), Gaps = 7/72 (9%)
 Frame = -1

Query: 364  PLA*SSRPGKASPVIRRPSMHGNGSSSAASEKEEPGSSGTVGR*GYEGFASSR------- 206
            PL  S  PG   P     S   NG+   A     PG+ G  GR G  GF   R       
Sbjct: 894  PLGVSGPPGARGPSGPVGSPGPNGAPGEAGRDGNPGNDGPPGRDGAPGFKGERGAPGNPG 953

Query: 205  PDSKLGESPEPH 170
            P   LG +P PH
Sbjct: 954  PSGALG-APGPH 964

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>CD6_MOUSE (Q61003) T-cell differentiation antigen CD6 precursor|
          Length = 665

 Score = 33.1 bits (74), Expect = 0.67
 Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 1/121 (0%)
 Frame = +3

Query: 15  VPAQA-SQRDADAVQFDFATRNSSLPLEGISRRYVLDDSVGAEDHHVPEPSAQWGSGDSP 191
           VPA + S  D+D   +DF    SS P   ++  Y       ++ H V E  AQ      P
Sbjct: 470 VPADSDSSSDSDYEHYDF----SSQPPVALTTFY------NSQRHRVTEEEAQQNRFQMP 519

Query: 192 NLESGLEEANPSYPYLPTVPEEPGSSFSEAAEDDPLPCIEGLRITGEAFPGRELQASGFS 371
            LE GLEE + S  ++P                DP PC+  +   G  +  R    S  S
Sbjct: 520 PLEEGLEELHVS--HIPAA--------------DPRPCVADVPSRGSQYHVRNNSDSSTS 563

Query: 372 T 374
           +
Sbjct: 564 S 564

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>NCOR1_XENTR (Q4KKX4) Nuclear receptor corepressor 1 (N-CoR1) (N-CoR) (xN-CoR)|
          Length = 2494

 Score = 32.7 bits (73), Expect = 0.87
 Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
 Frame = +3

Query: 12   DVPAQASQRDADAVQFDFATRNSSLPLEGISRRYVL---DDSVGAEDHHVPEPSAQWGSG 182
            ++PA  +     +    FA   S+L LE I R+ ++   DD   +EDH V    AQ    
Sbjct: 2296 NLPAVTTSGAISSRGHSFADPASNLGLEDIIRKALMGNFDDK--SEDHSVLVGVAQGNPS 2353

Query: 183  DSPNLESGLEEANPS 227
             + N E+  EEANPS
Sbjct: 2354 GTQNSEARREEANPS 2368

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>VGP3_EBVP3 (P68344) Envelope glycoprotein GP340 (Membrane antigen) (MA)|
          Length = 886

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 29/96 (30%), Positives = 37/96 (38%), Gaps = 9/96 (9%)
 Frame = -1

Query: 505 SMASRLSTSSAVTK*TGCLAPSMNFTEPSSK*RTHSKLQLVVPLVENPLA*SS------- 347
           S A   +T+S     TG  AP+     PSS   TH    L  P    P   ++       
Sbjct: 422 SKAPESTTTSPTLNTTGFAAPNTTTGLPSS---THVPTNLTAPASTGPTVSTADVTSPTP 478

Query: 346 --RPGKASPVIRRPSMHGNGSSSAASEKEEPGSSGT 245
                 ASPV   PS   NG+ S A +   P S+ T
Sbjct: 479 AGTTSGASPVTPSPSPRDNGTESKAPDMTSPTSAVT 514

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>VGP3_EBVA8 (P68343) Envelope glycoprotein GP340 (Membrane antigen) (MA)|
          Length = 886

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 29/96 (30%), Positives = 37/96 (38%), Gaps = 9/96 (9%)
 Frame = -1

Query: 505 SMASRLSTSSAVTK*TGCLAPSMNFTEPSSK*RTHSKLQLVVPLVENPLA*SS------- 347
           S A   +T+S     TG  AP+     PSS   TH    L  P    P   ++       
Sbjct: 422 SKAPESTTTSPTLNTTGFAAPNTTTGLPSS---THVPTNLTAPASTGPTVSTADVTSPTP 478

Query: 346 --RPGKASPVIRRPSMHGNGSSSAASEKEEPGSSGT 245
                 ASPV   PS   NG+ S A +   P S+ T
Sbjct: 479 AGTTSGASPVTPSPSPRDNGTESKAPDMTSPTSAVT 514

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>KISSR_HUMAN (Q969F8) KiSS-1 receptor (KiSS-1R) (Kisspeptins receptor) (Metastin|
           receptor) (G-protein coupled receptor 54)
           (Hypogonadotropin-1) (hOT7T175)
          Length = 398

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 346 RPGKASPVIRRPSMHGNGSSSAASEKEEPGSSGTVGR 236
           RPG + P      +H  GS  A +  ++PGSSG   R
Sbjct: 350 RPGPSDPAAPHAELHRLGSHPAPARAQKPGSSGLAAR 386

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>OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)|
          Length = 2716

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 13/95 (13%)
 Frame = +3

Query: 144 HHVPEPSAQWGSGDSPNLESG-------------LEEANPSYPYLPTVPEEPGSSFSEAA 284
           H  PEP+  W  G SP+  SG             L++  P  P++      P SS   A 
Sbjct: 402 HQYPEPNRPWPGGSSPSPGSGHPLPPASPHHVPPLQQQPPPPPHVSAGGPPPSSSPGHAP 461

Query: 285 EDDPLPCIEGLRITGEAFPGRELQASGFSTNGTTS 389
              P P         +A P    +  G ++N ++S
Sbjct: 462 SPSPQP--------SQASPSPHQELIGQNSNDSSS 488

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>MRP_RABIT (P35566) MARCKS-related protein (MARCKS-like protein 1) (Macrophage|
           myristoylated alanine-rich C kinase substrate)
           (Mac-MARCKS) (MacMARCKS)
          Length = 198

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = -1

Query: 346 RPGKASPV-IRRPSMHGNGSSSAASEKEEPGSSGTVGR*GYEGFASSRPDSKLGESPEPH 170
           +P K S +  +R    G G SSA+S  EE    G +G    EG A   P+ K   +PE  
Sbjct: 95  KPFKLSGLSFKRNRKEGGGDSSASSPTEEEQEQGEIGACSEEGTA---PEGKAAATPESQ 151

Query: 169 *AEGSG 152
             +  G
Sbjct: 152 EPQAKG 157

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>DPO3B_MYCPA (Q9L7L6) DNA polymerase III beta subunit (EC 2.7.7.7)|
          Length = 399

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 12/44 (27%)
 Frame = +3

Query: 228 YPYLPTVPEE----PGSSFSE--------AAEDDPLPCIEGLRI 323
           YP LPT+PEE    P   F+E        A  DD LP + G+R+
Sbjct: 126 YPTLPTLPEETGTLPADLFAEAIGQVAIAAGRDDTLPMLTGIRV 169

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>DPO3B_MYCTU (Q50790) DNA polymerase III beta subunit (EC 2.7.7.7)|
          Length = 402

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 12/44 (27%)
 Frame = +3

Query: 228 YPYLPTVPEE----PGSSFSE--------AAEDDPLPCIEGLRI 323
           YP LPT+PEE    P   F+E        A  DD LP + G+R+
Sbjct: 126 YPTLPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRV 169

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>DPO3B_MYCBO (O33914) DNA polymerase III beta subunit (EC 2.7.7.7)|
          Length = 402

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 12/44 (27%)
 Frame = +3

Query: 228 YPYLPTVPEE----PGSSFSE--------AAEDDPLPCIEGLRI 323
           YP LPT+PEE    P   F+E        A  DD LP + G+R+
Sbjct: 126 YPTLPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRV 169

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>UNC37_CAEEL (O02482) Transcription factor unc-37 (Uncoordinated protein 37)|
          Length = 612

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
 Frame = -1

Query: 313 PSMHGNGSSSAASEKEEPGSSGTVGR*GYEGFASSRPDSKL-GESPEPH*AEGSGTWWSS 137
           P  +GNG+  A      PG++G +G      F  S   S+L  +   PH   G G   SS
Sbjct: 100 PRENGNGAP-ALPPGFPPGAAGMLGMMPNMPFGMSPAMSQLFNQFASPHVNGGDGAGGSS 158

Query: 136 APTESSKTYLLLMPSSGRLEFRVAKSNWTASAS 38
                +K   L  P  G LE  V   +  ++AS
Sbjct: 159 GGASEAKKAKLEDPDDGELEIDVTNDDHPSTAS 191

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>MYOZ1_BOVIN (Q8SQ24) Myozenin-1 (Calsarcin-2)|
          Length = 297

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = -1

Query: 352 SSRPGKASPVIRRPSMHGNGSSSAASEKEEPGSSGTVGR*GYEGFASSRPDSKLG 188
           + R G A         H  GS S +     PGS G  G  G+ G   + PD++ G
Sbjct: 116 AGRSGSAGQYGSDQQHHHQGSGSGSGSGSGPGSGGAGGPGGHSGRGGALPDNQAG 170

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>MRP_HUMAN (P49006) MARCKS-related protein (MARCKS-like protein 1) (Macrophage|
           myristoylated alanine-rich C kinase substrate)
           (Mac-MARCKS) (MacMARCKS)
          Length = 194

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
 Frame = -1

Query: 346 RPGKASPV-IRRPSMHGNGSSSAASEKEEPGSSGTVGR*GYEGFASSRPDSKLGESPEPH 170
           +P K S +  +R    G G SSA+S  EE    G +G    EG A    + K   +PE  
Sbjct: 95  KPFKLSGLSFKRNRKEGGGDSSASSPTEEEQEQGEIGACSDEGTAQ---EGKAAATPESQ 151

Query: 169 *AEGSGTWWSSAPTESS 119
             +  G   S+A  E +
Sbjct: 152 EPQAKGAEASAASEEEA 168

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>APBA3_HUMAN (O96018) Amyloid beta A4 precursor protein-binding family A member|
           3 (Neuron-specific X11L2 protein) (Neuronal
           Munc18-1-interacting protein 3) (Mint-3) (Adapter
           protein X11gamma)
          Length = 575

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 35/122 (28%), Positives = 47/122 (38%), Gaps = 14/122 (11%)
 Frame = +3

Query: 138 EDHHVPEPSAQWGSGDSPNLESGLEEANPSYPYLPTV----PEEP--GSSFSE------A 281
           ED      S +W  G S   E     ++   P+L TV    PEEP  G+   E      A
Sbjct: 143 EDPDEDSDSPEWVEGASAEQEGSRSSSSSPEPWLETVPLVTPEEPPAGAQSPETLASYPA 202

Query: 282 AEDDPLPCIEGLRITGEAFPGRELQASGF--STNGTTSCNFEWVRHLDDGSVKFIEGARQ 455
            ++ P PC     + G  F  R L ++      N  TS      R   D  VK  +G  Q
Sbjct: 203 PQEVPGPCDHEDLLDGVIFGARYLGSTQLVSERNPPTSTRMAQAREAMD-RVKAPDGETQ 261

Query: 456 PV 461
           P+
Sbjct: 262 PM 263

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>TRBB_RHISN (P55395) Probable conjugal transfer protein trbB|
          Length = 325

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
 Frame = +3

Query: 441 EGARQPVYLVTADDVDNLLAIEVQPLDDRKRKGDIVKV--YANDQAKITCDPQTKE 602
           E ++QP++ V  + VD +++IE  P   R R  DI++V  +AN + +I  D  T+E
Sbjct: 265 EASQQPMHEVIGEVVDLIVSIERTPRGRRVR--DIIQVERFANGRYEIESDQLTEE 318

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>SER1_GALME (O96614) Sericin-1 (Silk gum protein 1) (Fragment)|
          Length = 115

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 21/64 (32%), Positives = 31/64 (48%)
 Frame = -1

Query: 310 SMHGNGSSSAASEKEEPGSSGTVGR*GYEGFASSRPDSKLGESPEPH*AEGSGTWWSSAP 131
           S   +GSS ++      GSSG+ G  G  G +SS   +  G S     ++ SG+   S+ 
Sbjct: 53  SSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSSSSSSNGSGSSSGS--SQSSGSQGGSSS 110

Query: 130 TESS 119
           T SS
Sbjct: 111 TSSS 114

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>ASPP2_MOUSE (Q8CG79) Apoptosis-stimulating of p53 protein 2 (Tumor suppressor|
           p53-binding protein 2) (p53BP2) (53BP2) (Fragment)
          Length = 1088

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 15/71 (21%)
 Frame = +3

Query: 126 SVGAEDHHVPEPSA------QWGSGDSPNLESGLEEANPSYPYL--------PTVPEEP- 260
           S   E+  VP PSA      +  +  S NL++ +EE NP  P+L        P  P  P 
Sbjct: 775 SASTENSDVPAPSAGLEYVSEGVTDSSTNLQNNVEETNPEAPHLLEVYLEEYPPYPPPPY 834

Query: 261 GSSFSEAAEDD 293
            S   E +E+D
Sbjct: 835 PSGEPEVSEED 845

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>ATI_COWPX (P16602) A-type inclusion protein (ATI)|
          Length = 1284

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
 Frame = +3

Query: 108 RYVLDDSVGAEDHHVPEPSAQWGSGDSPNLESGLEEANPSYP--YLPTVPEEPGSSFSEA 281
           +Y++D+ V A D H+P+P    G  + P+   G +E     P   + + P++  + ++  
Sbjct: 324 KYLMDEEVPAYDKHLPKPITNTGI-EEPHATGGDKEEQEQQPVKVVQSKPDDGITPYNPF 382

Query: 282 AEDDPLPCI 308
            + D +P I
Sbjct: 383 EDPDYVPTI 391

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>SYE1_HELHP (Q7VHN8) Glutamyl-tRNA synthetase 1 (EC 6.1.1.17) (Glutamate--tRNA|
           ligase 1) (GluRS 1)
          Length = 464

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 22/82 (26%), Positives = 40/82 (48%)
 Frame = -2

Query: 381 FRWWRTHLLEVLVQEKLHP*YEDPLCMAMDHPLRLQKKKNQAPRVQ*EDRDMKGLLPQGQ 202
           F  ++T++ ++L  +K +  Y       +D   + Q+K  Q PR     RD  G+ PQG 
Sbjct: 80  FDLYKTYIQQLLESKKAYYCYMSK--EELDALRKEQEKNKQTPRYDNRYRDFTGIPPQG- 136

Query: 201 ILNWVSLQNPIEQKVLAHGGLQ 136
           I   V ++ P+E  +    G++
Sbjct: 137 IQPVVRIKAPLEGNIEFEDGIK 158

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>CO1A2_MOUSE (Q01149) Collagen alpha-2(I) chain precursor|
          Length = 1372

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 25/76 (32%), Positives = 28/76 (36%), Gaps = 7/76 (9%)
 Frame = -1

Query: 364  PLA*SSRPGKASPVIRRPSMHGNGSSSAASEKEEPGSSGTVGR*GYEGFASSR------- 206
            PL  S  PG   P     S   NG+   A     PGS G  GR G  G    R       
Sbjct: 902  PLGISGPPGARGPPGAVGSPGVNGAPGEAGRDGNPGSDGPPGRDGQPGHKGERGYPGSIG 961

Query: 205  PDSKLGESPEPH*AEG 158
            P    G +P PH + G
Sbjct: 962  PTGAAG-APGPHGSVG 976

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>AMOH_ARTGO (Q59118) Histamine oxidase (EC 1.4.3.6) (Copper amine oxidase)|
          Length = 683

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +3

Query: 345 RELQASGFSTNGTTSCNFEWVRHLDDGSVKFIEGARQPVYLVTADDVDNLLAIEVQP 515
           R L  S F+T G     F W  +L DG+++F   A   V+     D D   A E+ P
Sbjct: 388 RRLVVSFFTTVGNYDYGFYWYLYL-DGTIEFEAKATGIVFTAALPDKDYAYASEIAP 443

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>DPO3B_MYCSM (P52851) DNA polymerase III beta subunit (EC 2.7.7.7)|
          Length = 397

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 14/50 (28%)
 Frame = +3

Query: 228 YPYLPTVPEEPGSSFSE------------AAEDDPLPCIEGLR--ITGEA 335
           YP LP +PEE G   S+            A  DD LP + G+R  I+GE+
Sbjct: 124 YPALPALPEETGVIASDLFAEAIGQVAVAAGRDDTLPMLTGIRVEISGES 173

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>BSC5_YEAST (P53755) Bypass of stop codon protein 5|
          Length = 489

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = +3

Query: 57  FDFATRNSSLPLEGIS---RRYVLDDSVGAEDHHVPEPSAQWGSG 182
           ++ A+RN S+P EG S    R +  D VG ++H V     ++ SG
Sbjct: 100 YEVASRNQSIPSEGESGNDMRILTGDIVGPDNHEVTVDGRRFASG 144

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>UBXD3_MOUSE (Q8BG34) UBX domain-containing protein 3|
          Length = 277

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -1

Query: 349 SRPGKASPVIRRPSMHGNGSSSAASEKEEPGSSGT 245
           S  G+  P + RP   G+GS SA S    P SSG+
Sbjct: 41  SAKGRKRPNLHRPQGMGDGSPSALSSSPPPRSSGS 75

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>B2L13_HUMAN (Q9BXK5) Bcl-2-like 13 protein (Mil1 protein) (Bcl-rambo)|
          Length = 485

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = +3

Query: 198 ESGLEEANPSYPYLPTVPEEPGSSFSEAAEDDPLPCIEGLRI 323
           ES +EE +P+    P  P E  S  S A E  P+P  EG  I
Sbjct: 419 ESLVEELSPASEKKPVPPSEGKSRLSPAGEMKPMPLSEGKSI 460

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>UL09_HCMVA (P16745) Hypothetical protein UL9 precursor|
          Length = 228

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = +1

Query: 49  LSSLILLLGTQAYHSRALVEDMSWMILWVLKTTMCQNLLLNGVLETH 189
           L+  + L+   +++S     D  +   WVL+T +C N+ +  + +TH
Sbjct: 92  LNHTLFLINLTSHYSGIYYFDSLYTYGWVLRTPLCYNVTVYSIYQTH 138

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>FABH_RHIME (Q92QT4) 3-oxoacyl-[acyl-carrier-protein] synthase 3 (EC 2.3.1.41)|
           (3-oxoacyl-[acyl-carrier-protein] synthase III)
           (Beta-ketoacyl-ACP synthase III) (KAS III)
          Length = 323

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
 Frame = +3

Query: 360 SGFSTNGTTSCNFEWV------RHLDDGSVKFIEGARQPVYLVTADDVDNL------LAI 503
           + F   GTT+ + +W+      R + DGS K + G      +VT D   N       LA+
Sbjct: 232 AAFEATGTTADDIDWLVPHQANRRIIDGSAKKL-GIPLEKVVVTVDLHGNTSAASIPLAL 290

Query: 504 EVQPLDDRKRKGDIVKVYA 560
           +    D R +KGD+V + A
Sbjct: 291 DAAASDGRIKKGDLVMLEA 309

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>LIPS_MOUSE (P54310) Hormone-sensitive lipase (EC 3.1.1.79) (HSL)|
          Length = 759

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +3

Query: 183 DSPNLESGLEEANPSYPYLPTVPEEPGSSFSEAAEDDPLPCIEGLRITGEAFP 341
           DSP +   +E   PS P        PG+S  EA   D +  ++G+     AFP
Sbjct: 590 DSPEMSQSMETLGPSTPSDVNFFLRPGNSQEEAEAKDEVRPMDGVPRVRAAFP 642

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>DSPP_HUMAN (Q9NZW4) Dentin sialophosphoprotein precursor [Contains: Dentin|
           phosphoprotein (Dentin phosphophoryn) (DPP); Dentin
           sialoprotein (DSP)]
          Length = 1253

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
 Frame = -1

Query: 286 SAASEKEEPGSSGTVGR*G---YEGFASSRPDSKLGESPEPH*AEGSGTWWSSAPTESSK 116
           S  S ++E  +SGT+   G   +EG    + +++ G     H  EG+G+ W+    +S  
Sbjct: 40  SNVSVQDELNASGTIKESGVLVHEGDRGRQENTQDG-----HKGEGNGSKWAEVGGKSFS 94

Query: 115 TYLLLMPSSGRLE 77
           TY  L    G +E
Sbjct: 95  TYSTLANEEGNIE 107

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>SMAD9_HUMAN (O15198) Mothers against decapentaplegic homolog 9 (SMAD 9)|
           (Mothers against DPP homolog 9) (Smad9) (Madh6)
          Length = 467

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +3

Query: 186 SPNLESGLEEANPSYPYLPTVPEEPGSSFSEAAEDDPLP 302
           SP+          SYP+ P  P EP S +  + +  PLP
Sbjct: 192 SPSHAFSQSPCTASYPHSPGSPSEPESPYQHSVDTPPLP 230

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>SUHB_NEIMB (Q9JZ07) Inositol-1-monophosphatase (EC 3.1.3.25) (IMPase)|
           (Inositol-1-phosphatase) (I-1-Pase)
          Length = 261

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 15/67 (22%), Positives = 32/67 (47%)
 Frame = +3

Query: 273 SEAAEDDPLPCIEGLRITGEAFPGRELQASGFSTNGTTSCNFEWVRHLDDGSVKFIEGAR 452
           S+   +  +  +E L+   EA+P  ++      ++G  +  +EW+    DG+  F+ G  
Sbjct: 41  SDVDRNSEIILVEALK---EAYPHHKITCEESGSHGKAAAEYEWIIDPLDGTTNFLHG-- 95

Query: 453 QPVYLVT 473
            P Y ++
Sbjct: 96  HPQYAIS 102

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>SUHB_NEIMA (Q9JU03) Inositol-1-monophosphatase (EC 3.1.3.25) (IMPase)|
           (Inositol-1-phosphatase) (I-1-Pase)
          Length = 261

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 15/67 (22%), Positives = 32/67 (47%)
 Frame = +3

Query: 273 SEAAEDDPLPCIEGLRITGEAFPGRELQASGFSTNGTTSCNFEWVRHLDDGSVKFIEGAR 452
           S+   +  +  +E L+   EA+P  ++      ++G  +  +EW+    DG+  F+ G  
Sbjct: 41  SDVDRNSEIILVEALK---EAYPHHKITCEESGSHGKAAAEYEWIIDPLDGTTNFLHG-- 95

Query: 453 QPVYLVT 473
            P Y ++
Sbjct: 96  HPQYAIS 102

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>FABH_AGRT5 (Q8UG62) 3-oxoacyl-[acyl-carrier-protein] synthase 3 (EC 2.3.1.41)|
           (3-oxoacyl-[acyl-carrier-protein] synthase III)
           (Beta-ketoacyl-ACP synthase III) (KAS III)
          Length = 323

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 12/77 (15%)
 Frame = +3

Query: 366 FSTNGTTSCNFEWV------RHLDDGSVKFIEGARQPVYLVTADDVDNL------LAIEV 509
           F   GTT+ + +W+      + + DGS K +    + V ++T D   N       LA+ V
Sbjct: 234 FEATGTTADDLDWLVPHQANKRIIDGSAKKLNIDPEKV-VITVDKHGNTSAASIPLALAV 292

Query: 510 QPLDDRKRKGDIVKVYA 560
              D R +KGD+V + A
Sbjct: 293 AASDGRIKKGDLVMLEA 309

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>TYPA_HELPY (O25225) GTP-binding protein TypA/BipA homolog|
          Length = 599

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 22/65 (33%), Positives = 28/65 (43%)
 Frame = +3

Query: 198 ESGLEEANPSYPYLPTVPEEPGSSFSEAAEDDPLPCIEGLRITGEAFPGRELQASGFSTN 377
           +S ++ ANP  P  P   EEP  S   A  D PL  +EG  +T      R L+     TN
Sbjct: 285 DSVVDPANPM-PLDPMHLEEPTMSVYFAVNDSPLAGLEGKHVTANKLKDRLLKE--MQTN 341

Query: 378 GTTSC 392
               C
Sbjct: 342 IAMKC 346

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>HP1_DROVI (P29227) Heterochromatin protein 1 (HP1)|
          Length = 213

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = -1

Query: 292 SSSAASEKEEPGSSGTVGR*GYEGFASSRPDSKLGESPEPH*AEGS 155
           SSS++S+KE PGSS  V   G     +S       +S EP    GS
Sbjct: 84  SSSSSSKKERPGSSTKVKETGRTSTTASNSSGSKRKSEEPAGPAGS 129

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>SEC73_SCHPO (O13817) Protein transport protein sec73|
          Length = 1082

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 23/81 (28%)
 Frame = +3

Query: 249  PEEPGSSF-----------SEAAEDDPLPCIEGLRITGEAFPGR----ELQASGF----- 368
            PE P S+F           S+  +D+P+  I G   T E+ PG+     LQ   F     
Sbjct: 961  PENPSSTFFTPEILSPKVYSDNVKDEPVEDIFGFEDTSESSPGKPSQLRLQIEAFDDELA 1020

Query: 369  ---STNGTTSCNFEWVRHLDD 422
               S    T+C  +W    DD
Sbjct: 1021 DTASLGSVTTCLDQWQTFSDD 1041

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>ILVD_BURPS (Q63WB9) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)|
          Length = 557

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +3

Query: 417 DDGSVKFIEGARQPVYLVTADDVDNLLAIEVQPLDDRKRKGDIV 548
           +DG+V  I G + PV    A   D+  +     LDDR R GD+V
Sbjct: 389 EDGAVAKITGLKNPVITGPARVFDDEQSALAAILDDRIRAGDVV 432

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>ILVD_BURP1 (Q3JV12) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)|
          Length = 557

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +3

Query: 417 DDGSVKFIEGARQPVYLVTADDVDNLLAIEVQPLDDRKRKGDIV 548
           +DG+V  I G + PV    A   D+  +     LDDR R GD+V
Sbjct: 389 EDGAVAKITGLKNPVITGPARVFDDEQSALAAILDDRIRAGDVV 432

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>ILVD_BURMA (Q62LG7) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)|
          Length = 557

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +3

Query: 417 DDGSVKFIEGARQPVYLVTADDVDNLLAIEVQPLDDRKRKGDIV 548
           +DG+V  I G + PV    A   D+  +     LDDR R GD+V
Sbjct: 389 EDGAVAKITGLKNPVITGPARVFDDEQSALAAILDDRIRAGDVV 432

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>ATI_CAMPS (Q775Q2) A-type inclusion protein (ATI)|
          Length = 726

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 108 RYVLDDSVGAEDHHVPEPSAQWGSGDSPNLESGLEEANP 224
           +Y++D+ V A D H+P+P    G  + P+   G +E  P
Sbjct: 323 KYLMDEEVSAYDKHLPKPITNTGI-EEPHATGGDKEDQP 360

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>ATI_CAMPM (Q8V2M9) A-type inclusion protein (ATI)|
          Length = 726

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 108 RYVLDDSVGAEDHHVPEPSAQWGSGDSPNLESGLEEANP 224
           +Y++D+ V A D H+P+P    G  + P+   G +E  P
Sbjct: 323 KYLMDEEVSAYDKHLPKPITNTGI-EEPHATGGDKEDQP 360

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>ATI_CAMPC (Q05482) A-type inclusion protein (ATI)|
          Length = 726

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 108 RYVLDDSVGAEDHHVPEPSAQWGSGDSPNLESGLEEANP 224
           +Y++D+ V A D H+P+P    G  + P+   G +E  P
Sbjct: 323 KYLMDEEVSAYDKHLPKPITNTGI-EEPHATGGDKEDQP 360

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>RS17_ICTPU (Q90YQ6) 40S ribosomal protein S17|
          Length = 133

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +3

Query: 495 LAIEVQPLDDRKRKGDIVKVYANDQAKITCDPQTKELIK 611
           ++I++Q  +  +R   + +V A DQ  I  DP TKE++K
Sbjct: 68  ISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLK 106

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>RADC_ENTFA (Q82ZX1) DNA repair protein radC homolog|
          Length = 232

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -2

Query: 234 RDMKGLLPQGQILNWVSLQNPI-EQKVLAHGGLQHPQNHPRHIF 106
           ++MKGL  +  I  +++ +N I +QK +  G L     HPR IF
Sbjct: 120 QEMKGLQQEHLICIYLNTKNDIIQQKTIFKGSLNQSIAHPREIF 163

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>RS17_RAT (P04644) 40S ribosomal protein S17|
          Length = 134

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +3

Query: 495 LAIEVQPLDDRKRKGDIVKVYANDQAKITCDPQTKELIK 611
           ++I++Q  +  +R   + +V A DQ  I  DP TKE++K
Sbjct: 68  ISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLK 106

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>RS17_PIG (Q6QAP7) 40S ribosomal protein S17|
          Length = 134

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +3

Query: 495 LAIEVQPLDDRKRKGDIVKVYANDQAKITCDPQTKELIK 611
           ++I++Q  +  +R   + +V A DQ  I  DP TKE++K
Sbjct: 68  ISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLK 106

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>RS17_MOUSE (P63276) 40S ribosomal protein S17|
          Length = 134

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +3

Query: 495 LAIEVQPLDDRKRKGDIVKVYANDQAKITCDPQTKELIK 611
           ++I++Q  +  +R   + +V A DQ  I  DP TKE++K
Sbjct: 68  ISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLK 106

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>RS17_HUMAN (P08708) 40S ribosomal protein S17|
          Length = 134

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +3

Query: 495 LAIEVQPLDDRKRKGDIVKVYANDQAKITCDPQTKELIK 611
           ++I++Q  +  +R   + +V A DQ  I  DP TKE++K
Sbjct: 68  ISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLK 106

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>RS17_FELCA (P63275) 40S ribosomal protein S17|
          Length = 134

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +3

Query: 495 LAIEVQPLDDRKRKGDIVKVYANDQAKITCDPQTKELIK 611
           ++I++Q  +  +R   + +V A DQ  I  DP TKE++K
Sbjct: 68  ISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLK 106

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>RS17_CRIGR (P63274) 40S ribosomal protein S17|
          Length = 134

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +3

Query: 495 LAIEVQPLDDRKRKGDIVKVYANDQAKITCDPQTKELIK 611
           ++I++Q  +  +R   + +V A DQ  I  DP TKE++K
Sbjct: 68  ISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLK 106

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>RS17_COTJA (Q7ZUB2) 40S ribosomal protein S17|
          Length = 134

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +3

Query: 495 LAIEVQPLDDRKRKGDIVKVYANDQAKITCDPQTKELIK 611
           ++I++Q  +  +R   + +V A DQ  I  DP TKE++K
Sbjct: 68  ISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLK 106

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>RS17_CHICK (P08636) 40S ribosomal protein S17|
          Length = 134

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +3

Query: 495 LAIEVQPLDDRKRKGDIVKVYANDQAKITCDPQTKELIK 611
           ++I++Q  +  +R   + +V A DQ  I  DP TKE++K
Sbjct: 68  ISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLK 106

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>RS17_CANFA (P63273) 40S ribosomal protein S17|
          Length = 134

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +3

Query: 495 LAIEVQPLDDRKRKGDIVKVYANDQAKITCDPQTKELIK 611
           ++I++Q  +  +R   + +V A DQ  I  DP TKE++K
Sbjct: 68  ISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLK 106

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>TIP_PLAYO (Q7RRM4) T-cell immunomodulatory protein homolog precursor|
          Length = 701

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +3

Query: 399 EWVRHLDDGSVKFIEGARQPVYLVTAD-DVDNLLAIEVQPLDDRKRKGDIVKVYANDQ 569
           +++  LDD  + F   A  P YL   D D D  L + V   +D+ +K   V++Y N+Q
Sbjct: 396 DYISLLDDKGLHFSGDASYPSYLSVGDVDDDGYLDLLVSLRNDKGQK--FVRIYKNEQ 451


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,122,349
Number of Sequences: 219361
Number of extensions: 2130002
Number of successful extensions: 6595
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 6016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6551
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5596027262
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result