| Clone Name | basd22k10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_549857.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2583 Score = 379 bits (191), Expect = e-102 Identities = 401/471 (85%) Strand = Plus / Plus Query: 131 gggtgctgaagaccaccatgtgccagaaccttctgctcaatggggttctggagactcacc 190 ||||||||||| ||| |||| | ||||| ||||||||| |||||| |||||||||| Sbjct: 1511 gggtgctgaagtccaacatgcacgagaacattctgctcattggggtcatggagactcagt 1570 Query: 191 caatttagaatctggccttgaggaagcaaacccttcatatccctatcttcctactgtacc 250 ||||| | ||| ||| ||||||| |||||||||||||||| |||||||||||||| | Sbjct: 1571 taatttggtatccggcattgaggatacaaacccttcatatccgtatcttcctactgttct 1630 Query: 251 cgaggagcctggttcttctttttctgaagccgcagaggatgatccattgccatgcataga 310 ||||||||||| |||||||| |||||||| || |||||||||||| ||||| ||||||| Sbjct: 1631 tgaggagcctggatcttctttctctgaagctgctgaggatgatccactgccaggcataga 1690 Query: 311 gggtcttcgtatcacgggtgaagcttttcctggacgagaacttcaagcaagtgggttctc 370 ||| ||||| ||||| |||||||||||||||||| ||||||| |||||||| |||| ||| Sbjct: 1691 gggccttcgaatcacaggtgaagcttttcctggaagagaactccaagcaagcgggtactc 1750 Query: 371 caccaacggaaccacaagttgtaattttgagtgggttcgtcatttagatgatggctccgt 430 |||||| |||||||| |||||||||||||||||||| || |||||||| ||||||||||| Sbjct: 1751 caccaatggaaccaccagttgtaattttgagtgggtgcgccatttagaagatggctccgt 1810 Query: 431 aaaattcatagaaggagcaaggcaacccgtctatttggttactgctgatgatgttgataa 490 ||| ||||||||||||||||| ||||| ||||||||||||||| ||||| || || | Sbjct: 1811 aaatttcatagaaggagcaagacaacctaactatttggttactgccgatgacgtggacac 1870 Query: 491 tctactagccattgaagtccaacccctagacgacagaaaaagaaagggtgacatcgtaaa 550 ||||||| |||||||| || ||||| || || |||||||||||||| || || |||| Sbjct: 1871 attactagctattgaagtacagccccttgatgatagaaaaagaaagggggaaattgtaag 1930 Query: 551 ggtctatgctaacgatcaagcaaaaatcacttgcgatcctcaaacaaagga 601 | | || ||||| |||||| |||||| |||||||||||| |||||||||| Sbjct: 1931 gttttacgctaatgatcaaagaaaaattacttgcgatcctgaaacaaagga 1981
>dbj|AK100813.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023121P16, full insert sequence Length = 2583 Score = 371 bits (187), Expect = 2e-99 Identities = 400/471 (84%) Strand = Plus / Plus Query: 131 gggtgctgaagaccaccatgtgccagaaccttctgctcaatggggttctggagactcacc 190 ||||||||||| ||| |||| | ||||| ||||||||| |||||| |||||||||| Sbjct: 1511 gggtgctgaagtccaacatgcacgagaacattctgctcattggggtcatggagactcagt 1570 Query: 191 caatttagaatctggccttgaggaagcaaacccttcatatccctatcttcctactgtacc 250 ||||| | ||| ||| ||||||| |||||||||||||||| |||||||||||||| | Sbjct: 1571 taatttggtatccggcattgaggatacaaacccttcatatccgtatcttcctactgttct 1630 Query: 251 cgaggagcctggttcttctttttctgaagccgcagaggatgatccattgccatgcataga 310 ||||||||||| |||||||| |||||||| || |||||||||||| ||||| ||||||| Sbjct: 1631 tgaggagcctggatcttctttctctgaagctgctgaggatgatccactgccaggcataga 1690 Query: 311 gggtcttcgtatcacgggtgaagcttttcctggacgagaacttcaagcaagtgggttctc 370 ||| ||||| ||||| |||||||||||||||||| ||||||| |||||||| |||| ||| Sbjct: 1691 gggccttcgaatcacaggtgaagcttttcctggaagagaactccaagcaagcgggtactc 1750 Query: 371 caccaacggaaccacaagttgtaattttgagtgggttcgtcatttagatgatggctccgt 430 |||||| |||||||| |||||||||||||||||||| || |||||||| ||||||||||| Sbjct: 1751 caccaatggaaccaccagttgtaattttgagtgggtgcgccatttagaagatggctccgt 1810 Query: 431 aaaattcatagaaggagcaaggcaacccgtctatttggttactgctgatgatgttgataa 490 ||| ||||||||||||||||| ||||| ||||||||||||||| ||||| || || | Sbjct: 1811 aaatttcatagaaggagcaagacaacctaactatttggttactgccgatgacgtggacac 1870 Query: 491 tctactagccattgaagtccaacccctagacgacagaaaaagaaagggtgacatcgtaaa 550 ||||||| |||||||| || ||||| | || |||||||||||||| || || |||| Sbjct: 1871 attactagctattgaagtacagccccttggtgatagaaaaagaaagggggaaattgtaag 1930 Query: 551 ggtctatgctaacgatcaagcaaaaatcacttgcgatcctcaaacaaagga 601 | | || ||||| |||||| |||||| |||||||||||| |||||||||| Sbjct: 1931 gttttacgctaatgatcaaagaaaaattacttgcgatcctgaaacaaagga 1981
>gb|BT018968.1| Zea mays clone Contig370.F mRNA sequence Length = 1387 Score = 210 bits (106), Expect = 4e-51 Identities = 322/394 (81%) Strand = Plus / Plus Query: 176 ttctggagactcacccaatttagaatctggccttgaggaagcaaacccttcatatcccta 235 |||||||| |||||| ||||| |||||| ||||| || ||||| || |||| || || Sbjct: 334 ttctggaggctcacctaatttgacatctggtcttgatgacgcaaatccaccataccctta 393 Query: 236 tcttcctactgtacccgaggagcctggttcttctttttctgaagccgcagaggatgatcc 295 |||||||||||| | ||||||||| ||||||||||||| |||| |||||||||||||| Sbjct: 394 tcttcctactgtccttgaggagcctagttcttctttttccgaagttgcagaggatgatcc 453 Query: 296 attgccatgcatagagggtcttcgtatcacgggtgaagcttttcctggacgagaacttca 355 | ||| |||||| || || || ||||| |||||||| ||||||||| |||||||||| Sbjct: 454 gcttccagccatagaaggactgcgaatcacaggtgaagcctttcctggaagagaacttca 513 Query: 356 agcaagtgggttctccaccaacggaaccacaagttgtaattttgagtgggttcgtcattt 415 ||||||||||| ||| | | | ||||||||||||||||||||||||||||| || ||||| Sbjct: 514 agcaagtgggtactctatccatggaaccacaagttgtaattttgagtgggtacgccattt 573 Query: 416 agatgatggctccgtaaaattcatagaaggagcaaggcaacccgtctatttggttactgc 475 || ||||| || |||| || |||||||| ||| |||| ||| |||||| || |||| Sbjct: 574 ggacgatggatcaataaattttatagaaggtgcacggcagcccacctatttagtatctgc 633 Query: 476 tgatgatgttgataatctactagccattgaagtccaacccctagacgacagaaaaagaaa 535 ||||||||| || | ||||||| ||||||||||| || || || |||| |||||| || Sbjct: 634 tgatgatgtggactttgtactagcgattgaagtccagcctctggatgacaaaaaaaggaa 693 Query: 536 gggtgacatcgtaaaggtctatgctaacgatcaa 569 ||| || || || ||||| |||||||| |||||| Sbjct: 694 gggcgagattgtgaaggtttatgctaatgatcaa 727
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 145 bits (73), Expect = 2e-31 Identities = 106/117 (90%) Strand = Plus / Plus Query: 285 gaggatgatccattgccatgcatagagggtcttcgtatcacgggtgaagcttttcctgga 344 |||||||||||| ||||| |||||||||| ||||| ||||| |||||||||||||||||| Sbjct: 425874 gaggatgatccactgccaggcatagagggccttcgaatcacaggtgaagcttttcctgga 425933 Query: 345 cgagaacttcaagcaagtgggttctccaccaacggaaccacaagttgtaattttgag 401 ||||||| |||||||| |||| ||||||||| |||||||| ||||||||||||||| Sbjct: 425934 agagaactccaagcaagcgggtactccaccaatggaaccaccagttgtaattttgag 425990 Score = 105 bits (53), Expect = 2e-19 Identities = 125/149 (83%) Strand = Plus / Plus Query: 131 gggtgctgaagaccaccatgtgccagaaccttctgctcaatggggttctggagactcacc 190 ||||||||||| ||| |||| | ||||| ||||||||| |||||| |||||||||| Sbjct: 425637 gggtgctgaagtccaacatgcacgagaacattctgctcattggggtcatggagactcagt 425696 Query: 191 caatttagaatctggccttgaggaagcaaacccttcatatccctatcttcctactgtacc 250 ||||| | ||| ||| ||||||| |||||||||||||||| |||||||||||||| | Sbjct: 425697 taatttggtatccggcattgaggatacaaacccttcatatccgtatcttcctactgttct 425756 Query: 251 cgaggagcctggttcttctttttctgaag 279 ||||||||||| |||||||| ||||||| Sbjct: 425757 tgaggagcctggatcttctttctctgaag 425785 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 400 agtgggttcgtcatttagatgatggctccgtaaaattcatagaagg 445 ||||||| || |||||||| |||||||||||||| ||||||||||| Sbjct: 426116 agtgggtgcgccatttagaagatggctccgtaaatttcatagaagg 426161 Score = 54.0 bits (27), Expect = 6e-04 Identities = 78/95 (82%) Strand = Plus / Plus Query: 443 aggagcaaggcaacccgtctatttggttactgctgatgatgttgataatctactagccat 502 ||||||||| ||||| ||||||||||||||| ||||| || || | ||||||| || Sbjct: 426263 aggagcaagacaacctaactatttggttactgccgatgacgtggacacattactagctat 426322 Query: 503 tgaagtccaacccctagacgacagaaaaagaaagg 537 |||||| || ||||| || || ||||||||||||| Sbjct: 426323 tgaagtacagccccttgatgatagaaaaagaaagg 426357
>dbj|AP002863.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0005A05 Length = 190834 Score = 145 bits (73), Expect = 2e-31 Identities = 106/117 (90%) Strand = Plus / Plus Query: 285 gaggatgatccattgccatgcatagagggtcttcgtatcacgggtgaagcttttcctgga 344 |||||||||||| ||||| |||||||||| ||||| ||||| |||||||||||||||||| Sbjct: 177712 gaggatgatccactgccaggcatagagggccttcgaatcacaggtgaagcttttcctgga 177771 Query: 345 cgagaacttcaagcaagtgggttctccaccaacggaaccacaagttgtaattttgag 401 ||||||| |||||||| |||| ||||||||| |||||||| ||||||||||||||| Sbjct: 177772 agagaactccaagcaagcgggtactccaccaatggaaccaccagttgtaattttgag 177828 Score = 105 bits (53), Expect = 2e-19 Identities = 125/149 (83%) Strand = Plus / Plus Query: 131 gggtgctgaagaccaccatgtgccagaaccttctgctcaatggggttctggagactcacc 190 ||||||||||| ||| |||| | ||||| ||||||||| |||||| |||||||||| Sbjct: 177475 gggtgctgaagtccaacatgcacgagaacattctgctcattggggtcatggagactcagt 177534 Query: 191 caatttagaatctggccttgaggaagcaaacccttcatatccctatcttcctactgtacc 250 ||||| | ||| ||| ||||||| |||||||||||||||| |||||||||||||| | Sbjct: 177535 taatttggtatccggcattgaggatacaaacccttcatatccgtatcttcctactgttct 177594 Query: 251 cgaggagcctggttcttctttttctgaag 279 ||||||||||| |||||||| ||||||| Sbjct: 177595 tgaggagcctggatcttctttctctgaag 177623 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 400 agtgggttcgtcatttagatgatggctccgtaaaattcatagaagg 445 ||||||| || |||||||| |||||||||||||| ||||||||||| Sbjct: 177954 agtgggtgcgccatttagaagatggctccgtaaatttcatagaagg 177999 Score = 54.0 bits (27), Expect = 6e-04 Identities = 78/95 (82%) Strand = Plus / Plus Query: 443 aggagcaaggcaacccgtctatttggttactgctgatgatgttgataatctactagccat 502 ||||||||| ||||| ||||||||||||||| ||||| || || | ||||||| || Sbjct: 178101 aggagcaagacaacctaactatttggttactgccgatgacgtggacacattactagctat 178160 Query: 503 tgaagtccaacccctagacgacagaaaaagaaagg 537 |||||| || ||||| || || ||||||||||||| Sbjct: 178161 tgaagtacagccccttgatgatagaaaaagaaagg 178195
>dbj|AP002845.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0482C06 Length = 182779 Score = 145 bits (73), Expect = 2e-31 Identities = 106/117 (90%) Strand = Plus / Plus Query: 285 gaggatgatccattgccatgcatagagggtcttcgtatcacgggtgaagcttttcctgga 344 |||||||||||| ||||| |||||||||| ||||| ||||| |||||||||||||||||| Sbjct: 66075 gaggatgatccactgccaggcatagagggccttcgaatcacaggtgaagcttttcctgga 66134 Query: 345 cgagaacttcaagcaagtgggttctccaccaacggaaccacaagttgtaattttgag 401 ||||||| |||||||| |||| ||||||||| |||||||| ||||||||||||||| Sbjct: 66135 agagaactccaagcaagcgggtactccaccaatggaaccaccagttgtaattttgag 66191 Score = 105 bits (53), Expect = 2e-19 Identities = 125/149 (83%) Strand = Plus / Plus Query: 131 gggtgctgaagaccaccatgtgccagaaccttctgctcaatggggttctggagactcacc 190 ||||||||||| ||| |||| | ||||| ||||||||| |||||| |||||||||| Sbjct: 65838 gggtgctgaagtccaacatgcacgagaacattctgctcattggggtcatggagactcagt 65897 Query: 191 caatttagaatctggccttgaggaagcaaacccttcatatccctatcttcctactgtacc 250 ||||| | ||| ||| ||||||| |||||||||||||||| |||||||||||||| | Sbjct: 65898 taatttggtatccggcattgaggatacaaacccttcatatccgtatcttcctactgttct 65957 Query: 251 cgaggagcctggttcttctttttctgaag 279 ||||||||||| |||||||| ||||||| Sbjct: 65958 tgaggagcctggatcttctttctctgaag 65986 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 400 agtgggttcgtcatttagatgatggctccgtaaaattcatagaagg 445 ||||||| || |||||||| |||||||||||||| ||||||||||| Sbjct: 66317 agtgggtgcgccatttagaagatggctccgtaaatttcatagaagg 66362 Score = 54.0 bits (27), Expect = 6e-04 Identities = 78/95 (82%) Strand = Plus / Plus Query: 443 aggagcaaggcaacccgtctatttggttactgctgatgatgttgataatctactagccat 502 ||||||||| ||||| ||||||||||||||| ||||| || || | ||||||| || Sbjct: 66464 aggagcaagacaacctaactatttggttactgccgatgacgtggacacattactagctat 66523 Query: 503 tgaagtccaacccctagacgacagaaaaagaaagg 537 |||||| || ||||| || || ||||||||||||| Sbjct: 66524 tgaagtacagccccttgatgatagaaaaagaaagg 66558
>gb|AY112408.1| Zea mays CL4661_1 mRNA sequence Length = 779 Score = 103 bits (52), Expect = 7e-19 Identities = 115/136 (84%) Strand = Plus / Plus Query: 381 accacaagttgtaattttgagtgggttcgtcatttagatgatggctccgtaaaattcata 440 ||||||| |||||||||||||||||| || |||||||| || ||||| ||||| |||||| Sbjct: 10 accacaacttgtaattttgagtgggtgcgccatttagaagacggctcagtaaatttcata 69 Query: 441 gaaggagcaaggcaacccgtctatttggttactgctgatgatgttgataatctactagcc 500 |||||||||| ||| || |||| | |||||||| |||||||| || | | |||| ||| Sbjct: 70 gaaggagcaaagcagcctagctatgttgttactgccgatgatgtggacactttactcgcc 129 Query: 501 attgaagtccaacccc 516 ||||||||||| |||| Sbjct: 130 attgaagtccagcccc 145
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 89.7 bits (45), Expect = 1e-14 Identities = 72/81 (88%) Strand = Plus / Minus Query: 321 atcacgggtgaagcttttcctggacgagaacttcaagcaagtgggttctccaccaacgga 380 ||||| |||||||||||||||||| |||| |||||||||||||| | ||| | ||| || Sbjct: 48008 atcacaggtgaagcttttcctggaagagagcttcaagcaagtggctactctatcaatggg 47949 Query: 381 accacaagttgtaattttgag 401 ||||||||||||||||||||| Sbjct: 47948 accacaagttgtaattttgag 47928 Score = 71.9 bits (36), Expect = 2e-09 Identities = 66/76 (86%) Strand = Plus / Minus Query: 462 tatttggttactgctgatgatgttgataatctactagccattgaagtccaacccctagac 521 ||||| ||||||||||||||||| || | |||||||||||||||||||||| ||||| Sbjct: 47641 tatttagttactgctgatgatgtggactctttactagccattgaagtccaacctctagat 47582 Query: 522 gacagaaaaagaaagg 537 ||| | |||||||||| Sbjct: 47581 gaccggaaaagaaagg 47566 Score = 50.1 bits (25), Expect = 0.009 Identities = 100/125 (80%) Strand = Plus / Minus Query: 155 agaaccttctgctcaatggggttctggagactcacccaatttagaatctggccttgagga 214 ||||||| |||| ||||||||| | | | |||||| ||||| | |||||| |||| || Sbjct: 48267 agaacctcctgcacaatggggtccggagggctcacctaatttggcatctggtgttgatga 48208 Query: 215 agcaaacccttcatatccctatcttcctactgtacccgaggagcctggttcttctttttc 274 || ||||| |||| || |||||||||||||| | || |||||| |||||||||| || Sbjct: 48207 tgcgaacccgccatacccttatcttcctactgtccttgaagagcctagttcttctttctc 48148 Query: 275 tgaag 279 ||||| Sbjct: 48147 tgaag 48143
>gb|AC073405.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0036D10, complete sequence Length = 156772 Score = 89.7 bits (45), Expect = 1e-14 Identities = 72/81 (88%) Strand = Plus / Minus Query: 321 atcacgggtgaagcttttcctggacgagaacttcaagcaagtgggttctccaccaacgga 380 ||||| |||||||||||||||||| |||| |||||||||||||| | ||| | ||| || Sbjct: 48008 atcacaggtgaagcttttcctggaagagagcttcaagcaagtggctactctatcaatggg 47949 Query: 381 accacaagttgtaattttgag 401 ||||||||||||||||||||| Sbjct: 47948 accacaagttgtaattttgag 47928 Score = 71.9 bits (36), Expect = 2e-09 Identities = 66/76 (86%) Strand = Plus / Minus Query: 462 tatttggttactgctgatgatgttgataatctactagccattgaagtccaacccctagac 521 ||||| ||||||||||||||||| || | |||||||||||||||||||||| ||||| Sbjct: 47641 tatttagttactgctgatgatgtggactctttactagccattgaagtccaacctctagat 47582 Query: 522 gacagaaaaagaaagg 537 ||| | |||||||||| Sbjct: 47581 gaccggaaaagaaagg 47566 Score = 50.1 bits (25), Expect = 0.009 Identities = 100/125 (80%) Strand = Plus / Minus Query: 155 agaaccttctgctcaatggggttctggagactcacccaatttagaatctggccttgagga 214 ||||||| |||| ||||||||| | | | |||||| ||||| | |||||| |||| || Sbjct: 48267 agaacctcctgcacaatggggtccggagggctcacctaatttggcatctggtgttgatga 48208 Query: 215 agcaaacccttcatatccctatcttcctactgtacccgaggagcctggttcttctttttc 274 || ||||| |||| || |||||||||||||| | || |||||| |||||||||| || Sbjct: 48207 tgcgaacccgccatacccttatcttcctactgtccttgaagagcctagttcttctttctc 48148 Query: 275 tgaag 279 ||||| Sbjct: 48147 tgaag 48143
>gb|AC152969.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0098I11, complete sequence Length = 122970 Score = 89.7 bits (45), Expect = 1e-14 Identities = 72/81 (88%) Strand = Plus / Minus Query: 321 atcacgggtgaagcttttcctggacgagaacttcaagcaagtgggttctccaccaacgga 380 ||||| |||||||||||||||||| |||| |||||||||||||| | ||| | ||| || Sbjct: 57395 atcacaggtgaagcttttcctggaagagagcttcaagcaagtggctactctatcaatggg 57336 Query: 381 accacaagttgtaattttgag 401 ||||||||||||||||||||| Sbjct: 57335 accacaagttgtaattttgag 57315 Score = 71.9 bits (36), Expect = 2e-09 Identities = 66/76 (86%) Strand = Plus / Minus Query: 462 tatttggttactgctgatgatgttgataatctactagccattgaagtccaacccctagac 521 ||||| ||||||||||||||||| || | |||||||||||||||||||||| ||||| Sbjct: 57028 tatttagttactgctgatgatgtggactctttactagccattgaagtccaacctctagat 56969 Query: 522 gacagaaaaagaaagg 537 ||| | |||||||||| Sbjct: 56968 gaccggaaaagaaagg 56953 Score = 50.1 bits (25), Expect = 0.009 Identities = 100/125 (80%) Strand = Plus / Minus Query: 155 agaaccttctgctcaatggggttctggagactcacccaatttagaatctggccttgagga 214 ||||||| |||| ||||||||| | | | |||||| ||||| | |||||| |||| || Sbjct: 57654 agaacctcctgcacaatggggtccggagggctcacctaatttggcatctggtgttgatga 57595 Query: 215 agcaaacccttcatatccctatcttcctactgtacccgaggagcctggttcttctttttc 274 || ||||| |||| || |||||||||||||| | || |||||| |||||||||| || Sbjct: 57594 tgcgaacccgccatacccttatcttcctactgtccttgaagagcctagttcttctttctc 57535 Query: 275 tgaag 279 ||||| Sbjct: 57534 tgaag 57530
>ref|NM_122258.2| Arabidopsis thaliana unknown protein AT5G23510 mRNA, complete cds Length = 1182 Score = 54.0 bits (27), Expect = 6e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 378 ggaaccacaagttgtaattttgagtgggttcgtcatttagatgatgg 424 ||||| ||||||||||||||||||||||| ||||| |||| ||||| Sbjct: 255 ggaacaacaagttgtaattttgagtgggtatgtcatctagaagatgg 301
>emb|BX832098.1|CNS09ZNM Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH51ZC07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1182 Score = 54.0 bits (27), Expect = 6e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 378 ggaaccacaagttgtaattttgagtgggttcgtcatttagatgatgg 424 ||||| ||||||||||||||||||||||| ||||| |||| ||||| Sbjct: 255 ggaacaacaagttgtaattttgagtgggtatgtcatctagaagatgg 301
>ref|NM_122256.2| Arabidopsis thaliana unknown protein AT5G23490 mRNA, complete cds Length = 2712 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Plus Query: 378 ggaaccacaagttgtaattttgagtgggt 406 ||||| ||||||||||||||||||||||| Sbjct: 1993 ggaacaacaagttgtaattttgagtgggt 2021
>gb|AY072179.1| Arabidopsis thaliana At5g23490 mRNA sequence Length = 2789 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Plus Query: 378 ggaaccacaagttgtaattttgagtgggt 406 ||||| ||||||||||||||||||||||| Sbjct: 2070 ggaacaacaagttgtaattttgagtgggt 2098
>ref|NM_013622.2| Mus musculus opioid receptor, delta 1 (Oprd1), mRNA Length = 4022 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 337 ttcctggacgagaacttcaagc 358 |||||||||||||||||||||| Sbjct: 1060 ttcctggacgagaacttcaagc 1081
>ref|NM_012617.1| Rattus norvegicus opioid receptor, delta 1 (Oprd1), mRNA Length = 1418 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 337 ttcctggacgagaacttcaagc 358 |||||||||||||||||||||| Sbjct: 1063 ttcctggacgagaacttcaagc 1084
>gb|S66181.1| delta opiate receptor [mice, NG108-15 hybrid cells, mRNA Partial, 2203 nt] Length = 2203 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 337 ttcctggacgagaacttcaagc 358 |||||||||||||||||||||| Sbjct: 937 ttcctggacgagaacttcaagc 958
>gb|S65335.1| Mus sp. delta opioid receptor mRNA, complete cds Length = 1834 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 337 ttcctggacgagaacttcaagc 358 |||||||||||||||||||||| Sbjct: 985 ttcctggacgagaacttcaagc 1006
>dbj|AK043873.1| Mus musculus 10 days neonate cortex cDNA, RIKEN full-length enriched library, clone:A830044L10 product:DELTA-TYPE OPIOID RECEPTOR, full insert sequence Length = 4022 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 337 ttcctggacgagaacttcaagc 358 |||||||||||||||||||||| Sbjct: 1060 ttcctggacgagaacttcaagc 1081
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 466 tggttactgctgatgatgttga 487 |||||||||||||||||||||| Sbjct: 1982699 tggttactgctgatgatgttga 1982720
>dbj|AP004314.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0495H05 Length = 205595 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 466 tggttactgctgatgatgttga 487 |||||||||||||||||||||| Sbjct: 66996 tggttactgctgatgatgttga 67017
>dbj|AK101929.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033072F08, full insert sequence Length = 2717 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 466 tggttactgctgatgatgttga 487 |||||||||||||||||||||| Sbjct: 1285 tggttactgctgatgatgttga 1306
>dbj|AK073763.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033068G07, full insert sequence Length = 3775 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 466 tggttactgctgatgatgttga 487 |||||||||||||||||||||| Sbjct: 1230 tggttactgctgatgatgttga 1251
>emb|AL844512.16| Zebrafish DNA sequence from clone DKEY-8M7, complete sequence Length = 231383 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 381 accacaagttgtaattttgagt 402 |||||||||||||||||||||| Sbjct: 53823 accacaagttgtaattttgagt 53844
>dbj|D16348.1|RATRORA Rattus norvegicus ROR-A mRNA for opioid receptor A, complete cds Length = 1418 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 337 ttcctggacgagaacttcaagc 358 |||||||||||||||||||||| Sbjct: 1063 ttcctggacgagaacttcaagc 1084
>emb|AL669981.11| Mouse DNA sequence from clone RP23-335B9 on chromosome 4, complete sequence Length = 222981 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 337 ttcctggacgagaacttcaagc 358 |||||||||||||||||||||| Sbjct: 160395 ttcctggacgagaacttcaagc 160374
>gb|L07271.1|MUSDOPRCP Mouse delta-opioid receptor (DOR-1) mRNA sequence Length = 1835 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 337 ttcctggacgagaacttcaagc 358 |||||||||||||||||||||| Sbjct: 986 ttcctggacgagaacttcaagc 1007
>gb|L06322.1|MUSDELTO Mus musculus delta-opioid receptor mRNA, complete cds Length = 2219 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 337 ttcctggacgagaacttcaagc 358 |||||||||||||||||||||| Sbjct: 1016 ttcctggacgagaacttcaagc 1037
>gb|L11064.1|MUSDELOPRE Mouse delta opioid receptor mRNA, complete cds Length = 2272 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 337 ttcctggacgagaacttcaagc 358 |||||||||||||||||||||| Sbjct: 969 ttcctggacgagaacttcaagc 990
>gb|U00475.1|RNU00475 Rattus norvegicus Sprague-Dawley delta opioid receptor (dor1) mRNA, complete cds Length = 1366 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 337 ttcctggacgagaacttcaagc 358 |||||||||||||||||||||| Sbjct: 1006 ttcctggacgagaacttcaagc 1027
>ref|NM_120929.2| Arabidopsis thaliana unknown protein AT5G08440 mRNA, complete cds Length = 2744 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 374 caacggaaccacaagttgtaattttgagtgggt 406 ||||||||| |||| ||||||||||||||||| Sbjct: 1952 caacggaacgacaaaatgtaattttgagtgggt 1984
>emb|CR954246.1| Pseudoalteromonas haloplanktis str. TAC125 chromosome I, complete sequence Length = 3214944 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 413 tttagatgatggctccgtaaa 433 ||||||||||||||||||||| Sbjct: 1328489 tttagatgatggctccgtaaa 1328469
>gb|AC006451.5| Homo sapiens PAC clone RP4-562A11 from 7, complete sequence Length = 145966 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 516 ctagacgacagaaaaagaaag 536 ||||||||||||||||||||| Sbjct: 69763 ctagacgacagaaaaagaaag 69743
>gb|AC103727.2| Homo sapiens chromosome 18, clone RP11-189C5, complete sequence Length = 149383 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 201 tctggccttgaggaagcaaac 221 ||||||||||||||||||||| Sbjct: 64972 tctggccttgaggaagcaaac 64992
>emb|BX830014.1|CNS09ZWH Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB53ZB10 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1107 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 374 caacggaaccacaagttgtaattttgagtgggt 406 ||||||||| |||| ||||||||||||||||| Sbjct: 415 caacggaacgacaaaatgtaattttgagtgggt 447
>ref|NM_214176.1| Sus scrofa orphanin FQ/nociceptin receptor (OPRL), mRNA Length = 2205 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 337 ttcctggacgagaacttcaag 357 ||||||||||||||||||||| Sbjct: 1430 ttcctggacgagaacttcaag 1450
>gb|U72758.1|SSU72758 Sus scrofa orphanin FQ/nociceptin receptor mRNA, complete cds Length = 2205 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 337 ttcctggacgagaacttcaag 357 ||||||||||||||||||||| Sbjct: 1430 ttcctggacgagaacttcaag 1450
>ref|XM_469473.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1636 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 468 gttactgctgatgatgttga 487 |||||||||||||||||||| Sbjct: 1031 gttactgctgatgatgttga 1050
>gb|CP000017.1| Streptococcus pyogenes MGAS5005, complete genome Length = 1838554 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 478 atgatgttgataatctactagcca 501 |||||| ||||||||||||||||| Sbjct: 584546 atgatggtgataatctactagcca 584569
>gb|CP000003.1| Streptococcus pyogenes MGAS10394, complete genome Length = 1899877 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 478 atgatgttgataatctactagcca 501 |||||| ||||||||||||||||| Sbjct: 600750 atgatggtgataatctactagcca 600773
>gb|AE006528.1| Streptococcus pyogenes M1 GAS, section 57 of 167 of the complete genome Length = 10283 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 478 atgatgttgataatctactagcca 501 |||||| ||||||||||||||||| Sbjct: 2380 atgatggtgataatctactagcca 2403
>gb|CP000262.1| Streptococcus pyogenes MGAS10750, complete genome Length = 1937111 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 478 atgatgttgataatctactagcca 501 |||||| ||||||||||||||||| Sbjct: 643505 atgatggtgataatctactagcca 643528
>gb|CP000261.1| Streptococcus pyogenes MGAS2096, complete genome Length = 1860355 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 478 atgatgttgataatctactagcca 501 |||||| ||||||||||||||||| Sbjct: 623508 atgatggtgataatctactagcca 623531
>gb|CP000260.1| Streptococcus pyogenes MGAS10270, complete genome Length = 1928252 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 478 atgatgttgataatctactagcca 501 |||||| ||||||||||||||||| Sbjct: 615528 atgatggtgataatctactagcca 615551
>gb|CP000259.1| Streptococcus pyogenes MGAS9429, complete genome Length = 1836467 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 478 atgatgttgataatctactagcca 501 |||||| ||||||||||||||||| Sbjct: 622100 atgatggtgataatctactagcca 622123
>gb|AC102312.11| Mus musculus chromosome 10, clone RP24-428L4, complete sequence Length = 182940 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 596 aaaggaactcataaagaaaa 615 |||||||||||||||||||| Sbjct: 67053 aaaggaactcataaagaaaa 67034
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 468 gttactgctgatgatgttga 487 |||||||||||||||||||| Sbjct: 28183465 gttactgctgatgatgttga 28183446
>gb|AC102734.11| Mus musculus chromosome 6, clone RP24-222N4, complete sequence Length = 238453 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 tatcacgggtgaagcttttc 339 |||||||||||||||||||| Sbjct: 78915 tatcacgggtgaagcttttc 78934
>gb|AE004353.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, section 10 of 93 of the complete chromosome Length = 31190 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 581 ttgcgatcctcaaacaaagg 600 |||||||||||||||||||| Sbjct: 27328 ttgcgatcctcaaacaaagg 27347
>gb|CP000056.1| Streptococcus pyogenes MGAS6180, complete genome Length = 1897573 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 478 atgatgttgataatctactagcca 501 |||||| ||||||||||||||||| Sbjct: 582704 atgatggtgataatctactagcca 582727
>emb|BX324209.11| Human DNA sequence from clone RP13-388O5 on chromosome 9, complete sequence Length = 58696 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 133 gtgctgaagaccaccatgtgccag 156 |||||||| ||||||||||||||| Sbjct: 25039 gtgctgaacaccaccatgtgccag 25016
>emb|AL033504.3|HS434O8 Human DNA sequence from clone RP3-434O8 on chromosome 6q24.1-25.1, complete sequence Length = 135815 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 202 ctggccttgaggaagcaaac 221 |||||||||||||||||||| Sbjct: 79849 ctggccttgaggaagcaaac 79868
>gb|AE010013.1| Streptococcus pyogenes strain MGAS8232, section 61 of 173 of the complete genome Length = 10607 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 478 atgatgttgataatctactagcca 501 |||||| ||||||||||||||||| Sbjct: 2703 atgatggtgataatctactagcca 2726
>gb|AC069074.11| Mus musculus 10 BAC RP23-243G3 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 190081 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 596 aaaggaactcataaagaaaa 615 |||||||||||||||||||| Sbjct: 183997 aaaggaactcataaagaaaa 184016
>gb|AC087797.5| Oryza sativa chromosome 3 BAC OSJNBb0022E02 genomic sequence, complete sequence Length = 122497 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 468 gttactgctgatgatgttga 487 |||||||||||||||||||| Sbjct: 34606 gttactgctgatgatgttga 34587
>gb|AC026464.7| Homo sapiens chromosome 16 clone RP11-343C2, complete sequence Length = 190185 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 202 ctggccttgaggaagcaaac 221 |||||||||||||||||||| Sbjct: 59102 ctggccttgaggaagcaaac 59121
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 468 gttactgctgatgatgttga 487 |||||||||||||||||||| Sbjct: 28274789 gttactgctgatgatgttga 28274770
>gb|AC026474.7| Homo sapiens chromosome 16 clone RP11-70O5, complete sequence Length = 196220 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 ctggccttgaggaagcaaac 221 |||||||||||||||||||| Sbjct: 84595 ctggccttgaggaagcaaac 84576
>gb|AC005075.2|AC005075 Homo sapiens BAC clone CTA-219E16 from 7, complete sequence Length = 118334 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 476 tgatgatgttgataatctac 495 |||||||||||||||||||| Sbjct: 25079 tgatgatgttgataatctac 25060
>gb|AE014074.1| Streptococcus pyogenes MGAS315, complete genome Length = 1900521 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 478 atgatgttgataatctactagcca 501 |||||| ||||||||||||||||| Sbjct: 554738 atgatggtgataatctactagcca 554761
>dbj|BA000034.2| Streptococcus pyogenes SSI-1 DNA, complete genome Length = 1894275 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 478 atgatgttgataatctactagcca 501 |||||| ||||||||||||||||| Sbjct: 1341996 atgatggtgataatctactagcca 1341973
>dbj|AB025633.2| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQM1 Length = 81365 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 378 ggaaccacaagttgtaattttgag 401 ||||| |||||||||||||||||| Sbjct: 6606 ggaacaacaagttgtaattttgag 6629 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 378 ggaaccacaagttgtaattttgag 401 ||||| |||||||||||||||||| Sbjct: 3572 ggaacaacaagttgtaattttgag 3595
>dbj|AK066944.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089H23, full insert sequence Length = 2264 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 468 gttactgctgatgatgttga 487 |||||||||||||||||||| Sbjct: 1452 gttactgctgatgatgttga 1471
>gb|AC151735.3| Mus musculus BAC clone RP23-24D16 from 9, complete sequence Length = 201762 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 155 agaaccttctgctcaatggg 174 |||||||||||||||||||| Sbjct: 33151 agaaccttctgctcaatggg 33170
>gb|AC002100.1|AC002100 Genomic sequence from Human 9q34, complete sequence Length = 33769 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 133 gtgctgaagaccaccatgtgccag 156 |||||||| ||||||||||||||| Sbjct: 5016 gtgctgaacaccaccatgtgccag 4993
>gb|AC140392.3| Mus musculus BAC clone RP24-89F9 from chromosome 9, complete sequence Length = 225973 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 155 agaaccttctgctcaatggg 174 |||||||||||||||||||| Sbjct: 155360 agaaccttctgctcaatggg 155379 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,184,254 Number of Sequences: 3902068 Number of extensions: 6184254 Number of successful extensions: 106180 Number of sequences better than 10.0: 66 Number of HSP's better than 10.0 without gapping: 66 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 105668 Number of HSP's gapped (non-prelim): 503 length of query: 619 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 596 effective length of database: 17,143,297,704 effective search space: 10217405431584 effective search space used: 10217405431584 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)