| Clone Name | basd22j17 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL359752.11| Human DNA sequence from clone RP5-1042I8 on chromosome 1p11-13.2 Contains the REG4 gene for regenerating islet-derived family member 4, a novel pseudogene, a profilin 1 (PFN1) pseudogene, the ADAM30 gene for a disintegrin and metalloproteinase domain 30 and the 3' end of the NOTCH2 gene for Notch homolog 2 (Drosophila), complete sequence Length = 137955 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Plus Query: 376 gcctcccttcctccccttcagca 398 ||||||||||||||||||||||| Sbjct: 132401 gcctcccttcctccccttcagca 132423
>emb|CR648748.2|CNS0EZJM Tetraodon nigroviridis full-length cDNA Length = 1350 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Plus Query: 385 cctccccttcagcagctcacac 406 |||||||||||||||||||||| Sbjct: 811 cctccccttcagcagctcacac 832
>gb|AC137515.3| Mus musculus BAC clone RP23-258C20 from 1, complete sequence Length = 215582 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Minus Query: 385 cctccccttcagcagctcacac 406 |||||||||||||||||||||| Sbjct: 165414 cctccccttcagcagctcacac 165393
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 152 ctccggcgcaccgccgcagcc 172 ||||||||||||||||||||| Sbjct: 1800446 ctccggcgcaccgccgcagcc 1800466
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 42.1 bits (21), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 cccagnacctgcacgccgccgctc 51 ||||| |||||||||||||||||| Sbjct: 1432627 cccagcacctgcacgccgccgctc 1432604
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 42.1 bits (21), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 28 cccagnacctgcacgccgccgctc 51 ||||| |||||||||||||||||| Sbjct: 3756008 cccagcacctgcacgccgccgctc 3756031
>ref|NM_165878.1| Drosophila melanogaster CG30046-RB (CG30046), mRNA Length = 2642 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 554 tggccatgggtttcatgggag 574 ||||||||||||||||||||| Sbjct: 1246 tggccatgggtttcatgggag 1226
>gb|AY070714.1| Drosophila melanogaster SD07907 full length cDNA Length = 2861 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 554 tggccatgggtttcatgggag 574 ||||||||||||||||||||| Sbjct: 1269 tggccatgggtttcatgggag 1249
>gb|AC007476.5|AC007476 Drosophila melanogaster, chromosome 2R, region 49A-49B, BAC clone BACR37P06, complete sequence Length = 171705 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 554 tggccatgggtttcatgggag 574 ||||||||||||||||||||| Sbjct: 4087 tggccatgggtttcatgggag 4067
>gb|AC007440.6|AC007440 Drosophila melanogaster, chromosome 2R, region 49A-49B, BAC clone BACR37I09, complete sequence Length = 184621 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 554 tggccatgggtttcatgggag 574 ||||||||||||||||||||| Sbjct: 158722 tggccatgggtttcatgggag 158702
>gb|AE003822.3| Drosophila melanogaster chromosome 2R, section 28 of 73 of the complete sequence Length = 233148 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 554 tggccatgggtttcatgggag 574 ||||||||||||||||||||| Sbjct: 27213 tggccatgggtttcatgggag 27193
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 cctgcacgccgccgctcgtc 54 |||||||||||||||||||| Sbjct: 1468810 cctgcacgccgccgctcgtc 1468791
>gb|AC113271.10| Mus musculus chromosome 5, clone RP23-376H8, complete sequence Length = 185353 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 384 tcctccccttcagcagctcacacg 407 |||||| ||||||||||||||||| Sbjct: 34542 tcctcctcttcagcagctcacacg 34565
>gb|AC103637.11| Mus musculus chromosome 3, clone RP24-376O20, complete sequence Length = 120487 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 ccccctcctatctgccctgc 287 |||||||||||||||||||| Sbjct: 73205 ccccctcctatctgccctgc 73224
>gb|AC154861.2| Mus musculus BAC clone RP23-8E13 from chromosome 14, complete sequence Length = 209896 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 tgtttccctcaccccacatc 77 |||||||||||||||||||| Sbjct: 118450 tgtttccctcaccccacatc 118431
>gb|AC116412.19| Mus musculus chromosome 5, clone RP24-82A20, complete sequence Length = 191823 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 463 aaacccactggttcctctcc 482 |||||||||||||||||||| Sbjct: 25305 aaacccactggttcctctcc 25286
>gb|AC182584.3| Pan troglodytes BAC clone CH251-530K15 from chromosome 2, complete sequence Length = 206103 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 tcccctccaacctcccctcc 221 |||||||||||||||||||| Sbjct: 60038 tcccctccaacctcccctcc 60019
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence Length = 6365727 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 560 tgggtttcatgggaggtgtttggc 583 ||||||| |||||||||||||||| Sbjct: 311863 tgggtttgatgggaggtgtttggc 311840
>gb|AC110234.11| Mus musculus chromosome 5, clone RP23-76J15, complete sequence Length = 235276 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 384 tcctccccttcagcagctcacacg 407 |||||| ||||||||||||||||| Sbjct: 220796 tcctcctcttcagcagctcacacg 220819
>emb|AL162408.8| Human DNA sequence from clone RP11-397O4 on chromosome 10 Contains a novel gene, the 5' end of a novel gene and a CpG island, complete sequence Length = 28205 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 566 tcatgggaggtgtttggctg 585 |||||||||||||||||||| Sbjct: 221 tcatgggaggtgtttggctg 202
>emb|AL136369.7| Human DNA sequence from clone RP1-251M9 on chromosome 10 Contains three novel genes, complete sequence Length = 110952 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 566 tcatgggaggtgtttggctg 585 |||||||||||||||||||| Sbjct: 109144 tcatgggaggtgtttggctg 109125
>emb|AL031965.8|HS355N11 Human DNA sequence from clone RP3-355N11 on chromosome 1q24.1-24.3 Contains the 5' end of a novel gene (FLJ23550), complete sequence Length = 78336 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 506 tttgttcatggagcatattt 525 |||||||||||||||||||| Sbjct: 21572 tttgttcatggagcatattt 21591
>emb|BX569691.1| Synechococcus sp. WH8102 complete genome; segment 3/7 Length = 347365 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 cccctccacgacgcctcgat 234 |||||||||||||||||||| Sbjct: 127779 cccctccacgacgcctcgat 127760
>emb|AL928592.13| Mouse DNA sequence from clone RP24-168J7 on chromosome 4 Contains a novel pseudogene and a novel gene, complete sequence Length = 126611 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 464 aacccactggttcctctccc 483 |||||||||||||||||||| Sbjct: 54870 aacccactggttcctctccc 54889
>gb|AC092733.18| Homo sapiens chromosome 11, clone RP11-193F22, complete sequence Length = 195538 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 372 actggcctcccttcctccccttca 395 |||||||||||| ||||||||||| Sbjct: 150834 actggcctccctacctccccttca 150811
>gb|AC183099.3| Pan troglodytes BAC clone CH251-727F5 from chromosome 2, complete sequence Length = 183714 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 tcccctccaacctcccctcc 221 |||||||||||||||||||| Sbjct: 16381 tcccctccaacctcccctcc 16362
>gb|AC006061.1| Homo sapiens X BAC GSHB-19O24 (Genome Systems Human BAC Library) complete sequence Length = 98056 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 cctcccttcctccccttcag 396 |||||||||||||||||||| Sbjct: 2404 cctcccttcctccccttcag 2385
>gb|AC079310.20| Homo sapiens 12 BAC RP11-850F7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 180971 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 tccacaccactggcctccct 383 |||||||||||||||||||| Sbjct: 87043 tccacaccactggcctccct 87024
>gb|AF418981.1|AF418981 Homo sapiens preproteolysin (DSEP) gene, promoter region and complete cds Length = 8182 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 tccacaccactggcctccct 383 |||||||||||||||||||| Sbjct: 3728 tccacaccactggcctccct 3747
>gb|AC008641.7| Homo sapiens chromosome 5 clone CTB-17P3, complete sequence Length = 176629 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 373 ctggcctcccttcctcccct 392 |||||||||||||||||||| Sbjct: 74807 ctggcctcccttcctcccct 74826
>gb|AF314199.1|AF314199S1 Homo sapiens neuroplastoma apoptosis-related RNA-binding protein (CUGBP2) gene, exons 1a and 1b Length = 59000 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 566 tcatgggaggtgtttggctg 585 |||||||||||||||||||| Sbjct: 20996 tcatgggaggtgtttggctg 20977
>gb|AC139887.3| Homo sapiens BAC clone RP11-440L14 from 4, complete sequence Length = 186774 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 371 cactggcctcccttcctccc 390 |||||||||||||||||||| Sbjct: 168621 cactggcctcccttcctccc 168640
>gb|AC008666.5|AC008666 Homo sapiens chromosome 5 clone CTB-35A8, complete sequence Length = 99108 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 373 ctggcctcccttcctcccct 392 |||||||||||||||||||| Sbjct: 24096 ctggcctcccttcctcccct 24077
>gb|U79302.1|HSU79302 Human clone 23855 mRNA, partial cds Length = 1976 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 372 actggcctcccttcctccccttca 395 |||||||||||| ||||||||||| Sbjct: 972 actggcctccctacctccccttca 995
>gb|AC025752.8| Homo sapiens chromosome 5 clone CTC-430J12, complete sequence Length = 189154 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 cccctccaacctcccctcca 222 |||||||||||||||||||| Sbjct: 103464 cccctccaacctcccctcca 103483
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 acgacgcctcgatcttgcct 241 |||||||||||||||||||| Sbjct: 1077468 acgacgcctcgatcttgcct 1077487
>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome Length = 6413771 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 560 tgggtttcatgggaggtgtttggc 583 ||||||| |||||||||||||||| Sbjct: 2923435 tgggtttgatgggaggtgtttggc 2923412
>gb|AC154230.2| Mus musculus BAC clone RP24-156E24 from 16, complete sequence Length = 136341 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 468 cactggttcctctccctgat 487 |||||||||||||||||||| Sbjct: 84017 cactggttcctctccctgat 83998
>dbj|AP002478.3| Homo sapiens genomic DNA, chromosome 18 clone:RP11-874J12, complete sequence Length = 226147 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 tctcccttcatcggcctccc 351 |||||||||||||||||||| Sbjct: 197344 tctcccttcatcggcctccc 197325
>gb|AC131775.4| Mus musculus BAC clone RP24-313O6 from 6, complete sequence Length = 171720 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 tatctgccctgctctagatt 295 |||||||||||||||||||| Sbjct: 160797 tatctgccctgctctagatt 160816
>gb|AC133943.3| Mus musculus BAC clone RP24-104D12 from 3, complete sequence Length = 218218 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 ccccctcctatctgccctgc 287 |||||||||||||||||||| Sbjct: 14467 ccccctcctatctgccctgc 14486
>gb|AC171205.1| Mus musculus BAC clone RP23-441H20 from chromosome 16, complete sequence Length = 212822 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 468 cactggttcctctccctgat 487 |||||||||||||||||||| Sbjct: 211677 cactggttcctctccctgat 211696
>dbj|AP005204.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-340P19, complete sequence Length = 157244 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 tctcccttcatcggcctccc 351 |||||||||||||||||||| Sbjct: 40946 tctcccttcatcggcctccc 40927 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,236,742 Number of Sequences: 3902068 Number of extensions: 5236742 Number of successful extensions: 120780 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 120444 Number of HSP's gapped (non-prelim): 336 length of query: 661 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 638 effective length of database: 17,143,297,704 effective search space: 10937423935152 effective search space used: 10937423935152 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)