Clone Information

BLAST Search Result

Clone Name	basd22i14
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	VIP1_SCHPO (P87216) Protein vip1	45	2e-04
2	RSD1_SCHPO (O13845) RNA-binding protein rsd1	42	8e-04
3	SCE3_SCHPO (O14369) Probable RNA-binding protein sce3	39	0.009
4	GAR2_SCHPO (P41891) Protein gar2	35	0.17
5	PAB2_SCHPO (O14327) Polyadenylate-binding protein 2 (Poly(A)-bin...	34	0.22
6	RSP7_CAEEL (O01159) Probable splicing factor, arginine/serine-ri...	34	0.22
7	HNRPF_MACFA (Q60HC3) Heterogeneous nuclear ribonucleoprotein F (...	34	0.29
8	HNRPF_HUMAN (P52597) Heterogeneous nuclear ribonucleoprotein F (...	34	0.29
9	SFR11_HUMAN (Q05519) Splicing factor arginine/serine-rich 11 (Ar...	33	0.37
10	NOP12_YARLI (Q6C2Q7) Nucleolar protein 12	33	0.49
11	SFRS5_MOUSE (O35326) Splicing factor, arginine/serine-rich 5 (Pr...	33	0.64
12	SFRS5_RAT (Q09167) Splicing factor, arginine/serine-rich 5 (Pre-...	33	0.64
13	SFRS5_HUMAN (Q13243) Splicing factor, arginine/serine-rich 5 (Pr...	33	0.64
14	HNRH1_MOUSE (O35737) Heterogeneous nuclear ribonucleoprotein H (...	32	0.83
15	HNRH1_HUMAN (P31943) Heterogeneous nuclear ribonucleoprotein H (...	32	0.83
16	PPT2_RAT (O70489) Palmitoyl-protein thioesterase 2 precursor (EC...	32	0.83
17	DAZL_BRARE (Q9YGW7) Deleted in azoospermia-like (DAZ-like protei...	32	0.83
18	PRP24_YEAST (P49960) U4/U6 snRNA-associated splicing factor PRP2...	32	0.83
19	ABI3_HUMAN (Q9P2A4) ABI gene family member 3 (New molecule inclu...	32	1.1
20	HNRH2_MOUSE (P70333) Heterogeneous nuclear ribonucleoprotein H' ...	32	1.4
21	HNRH2_HUMAN (P55795) Heterogeneous nuclear ribonucleoprotein H' ...	32	1.4
22	DIAP1_HUMAN (O60610) Protein diaphanous homolog 1 (Diaphanous-re...	31	1.9
23	PPT2_HUMAN (Q9UMR5) Palmitoyl-protein thioesterase 2 precursor (...	31	1.9
24	SFRS7_MOUSE (Q8BL97) Splicing factor, arginine/serine-rich 7	31	1.9
25	SFRS7_HUMAN (Q16629) Splicing factor, arginine/serine-rich 7 (Sp...	31	1.9
26	PPT2_MOUSE (O35448) Palmitoyl-protein thioesterase 2 precursor (...	31	2.4
27	PCD15_MOUSE (Q99PJ1) Protocadherin-15 precursor	31	2.4
28	LECB_PHYAM (Q9AVB0) Lectin-B precursor (PL-B)	30	3.2
29	FMN_CHICK (Q05858) Formin (Limb deformity protein)	30	3.2
30	HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)	30	3.2
31	HNRH3_HUMAN (P31942) Heterogeneous nuclear ribonucleoprotein H3 ...	30	3.2
32	SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)	30	4.1
33	RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C...	30	4.1
34	ITA5_XENLA (Q06274) Integrin alpha-5 precursor (Fibronectin rece...	30	4.1
35	ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encepha...	30	5.4
36	HCN3_RAT (Q9JKA8) Potassium/sodium hyperpolarization-activated c...	30	5.4
37	ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalo...	30	5.4
38	ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encepha...	30	5.4
39	COIA1_HUMAN (P39060) Collagen alpha-1(XVIII) chain precursor [Co...	30	5.4
40	TEGU_HHV11 (P10220) Large tegument protein (Virion protein UL36)	30	5.4
41	NENF_HUMAN (Q9UMX5) Neudesin precursor (Neuron-derived neurotrop...	29	7.1
42	ITA5_MOUSE (P11688) Integrin alpha-5 precursor (Fibronectin rece...	29	7.1
43	RX_DROME (Q9W2Q1) Retinal homeobox protein Rx (DRx1) (DRx)	29	9.2
44	DIAP1_MOUSE (O08808) Protein diaphanous homolog 1 (Diaphanous-re...	29	9.2
45	RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-bindin...	29	9.2
46	ARGJ_BACHK (Q6HE29) Arginine biosynthesis bifunctional protein a...	29	9.2
47	CG1_HUMAN (Q13495) CG1 protein (F18)	29	9.2
48	GNAQ_HOMAM (P91950) Guanine nucleotide-binding protein G(q) subu...	29	9.2
49	ITA5_HUMAN (P08648) Integrin alpha-5 precursor (Fibronectin rece...	29	9.2
50	ABI3_MOUSE (Q8BYZ1) ABI gene family member 3 (New molecule inclu...	29	9.2
51	HCN3_MOUSE (O88705) Potassium/sodium hyperpolarization-activated...	29	9.2

>VIP1_SCHPO (P87216) Protein vip1|
          Length = 257

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 25/69 (36%), Positives = 39/69 (56%)
 Frame = +3

Query: 243 VEVTNLSSSASENDLHEFFSFSGPIEHIDLIRSGGYGSTAYVTFKEPYALETAVLLSGAT 422
           V VTN+S   +E  + +FFSF G + +I   +S G   TA + F+ P A +TA+LL  A 
Sbjct: 5   VIVTNISPEVTEKQISDFFSFCGKVSNISTEKS-GETQTAKIQFERPSATKTALLLQDAL 63

Query: 423 IVDQPVCIS 449
           +    + I+
Sbjct: 64  LGQNKIQIT 72

to top

>RSD1_SCHPO (O13845) RNA-binding protein rsd1|
          Length = 604

 Score = 42.4 bits (98), Expect = 8e-04
 Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
 Frame = +3

Query: 240 TVEVTNLSSSASENDLHEFFSFSGPIEHIDLIR---SGGYGSTAYVTFKEPYALETAVLL 410
           TV V+ L++  +  +L++FF  +GP+    ++R   SG     AYV F    +++ A+ L
Sbjct: 241 TVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIAL 300

Query: 411 SGATIVDQPVCI 446
           SG  ++  PV +
Sbjct: 301 SGKRLLGLPVIV 312

to top

>SCE3_SCHPO (O14369) Probable RNA-binding protein sce3|
          Length = 388

 Score = 38.9 bits (89), Expect = 0.009
 Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
 Frame = +3

Query: 219 IMSGTGYTVEVTNLSSSASENDLHEFFSFSGPIEHIDLI------RSGGYGSTAYVTFKE 380
           I S   +T  V NLS   +ENDL +FF     +  I L+      RS G+G   YV F+ 
Sbjct: 88  IPSEPPFTAHVGNLSFDLTENDLGDFFGEG--VTSIRLVIDPLTERSRGFG---YVEFET 142

Query: 381 PYALETAVLLSGATIVDQPVCIS 449
              L  A+ LSG  ++ +PV I+
Sbjct: 143 ADTLSAALALSGEDLMGRPVRIT 165

to top

>GAR2_SCHPO (P41891) Protein gar2|
          Length = 500

 Score = 34.7 bits (78), Expect = 0.17
 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
 Frame = +3

Query: 240 TVEVTNLSSSASENDLHEFFSFSGPIEHIDL---IRSGGYGSTAYVTFKEPYALETAVLL 410
           TV V NLS +A+E+DL   F   G I+ I L    +SG      YVTF +  + +  V +
Sbjct: 367 TVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEM 426

Query: 411 SGATIVDQP 437
           +G  I  +P
Sbjct: 427 NGHFIAGRP 435

to top

>PAB2_SCHPO (O14327) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (Poly(A)-binding protein II) (PABII)
          Length = 166

 Score = 34.3 bits (77), Expect = 0.22
 Identities = 18/73 (24%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
 Frame = +3

Query: 240 TVEVTNLSSSASENDLHEFFSFSGPIEHIDLIR---SGGYGSTAYVTFKEPYALETAVLL 410
           +V V N+  S +  +L   F+  G +  + ++    +G     AY+ F EP  +  A+LL
Sbjct: 56  SVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLL 115

Query: 411 SGATIVDQPVCIS 449
           +G+ + ++P+ ++
Sbjct: 116 NGSMLHERPLKVT 128

to top

>RSP7_CAEEL (O01159) Probable splicing factor, arginine/serine-rich 7 (p54)|
          Length = 452

 Score = 34.3 bits (77), Expect = 0.22
 Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
 Frame = +3

Query: 243 VEVTNLSSSASENDLHEFFSFSGPIEHIDLIRSGGYGS------TAYVTFKEPYALETAV 404
           + V N+S+SA+ + ++  F++ G I+ + +  S G  +      TA++ F +   +E A 
Sbjct: 12  LHVANISTSATRDHIYNMFNYLGKIQDLKVYPSEGNITANTLLKTAFIKFDDERCVEVAQ 71

Query: 405 LLSGATIVDQPVCISRWGQ---PDEPSNF 482
            L+   ++D  +    +     PDE S F
Sbjct: 72  HLTNTVVIDCAIVCLPYPNPVIPDEESFF 100

to top

>HNRPF_MACFA (Q60HC3) Heterogeneous nuclear ribonucleoprotein F (hnRNP F)|
          Length = 414

 Score = 33.9 bits (76), Expect = 0.29
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +3

Query: 219 IMSGTGYTVEVTNLSSSASENDLHEFFSFSGPIE-HIDLIRSGGYGSTAYVTF 374
           + S TG+ V +  L   A+END++ FFS   P+  HI++   G     A V F
Sbjct: 282 VQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 334

to top

>HNRPF_HUMAN (P52597) Heterogeneous nuclear ribonucleoprotein F (hnRNP F)|
           (Nucleolin-like protein mcs94-1)
          Length = 414

 Score = 33.9 bits (76), Expect = 0.29
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +3

Query: 219 IMSGTGYTVEVTNLSSSASENDLHEFFSFSGPIE-HIDLIRSGGYGSTAYVTF 374
           + S TG+ V +  L   A+END++ FFS   P+  HI++   G     A V F
Sbjct: 282 VQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 334

to top

>SFR11_HUMAN (Q05519) Splicing factor arginine/serine-rich 11 (Arginine-rich 54|
           kDa nuclear protein) (p54)
          Length = 484

 Score = 33.5 bits (75), Expect = 0.37
 Identities = 29/120 (24%), Positives = 44/120 (36%), Gaps = 8/120 (6%)
 Frame = +3

Query: 135 GPRGAGGGTSPHSALCXXXXXXXXXXXXIMSGTGYTVEVTNLSSSASENDLHEFFSFSGP 314
           GP G GGG                       G    ++VTN+S SAS   +   F F G 
Sbjct: 18  GPGGGGGGGGG-------------------GGGTEVIQVTNVSPSASSEQMRTLFGFLGK 58

Query: 315 IEHIDLIRSGG-----YGSTAYVTFKEPYALETAVLLSGATIVDQPVCISRWGQ---PDE 470
           I+ + L               +V F +P +   A  L+    VD+ + +  + +   PDE
Sbjct: 59  IDELRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDE 118

to top

>NOP12_YARLI (Q6C2Q7) Nucleolar protein 12|
          Length = 509

 Score = 33.1 bits (74), Expect = 0.49
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
 Frame = +3

Query: 243 VEVTNLSSSASENDLHEFFSFSGPIEHIDLIRSG----GYGSTAYVTFKEPYALETAVLL 410
           V V  L     E  L E FS  G +E++ ++R      G G  AYV FK+  ++E A+LL
Sbjct: 276 VFVGALDFEEQEESLWEAFSSCGDVEYVRIVRDPKTNVGKGF-AYVQFKDVNSVEQALLL 334

Query: 411 SGATI 425
           +G  I
Sbjct: 335 NGKGI 339

to top

>SFRS5_MOUSE (O35326) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing|
           factor SRP40) (Delayed-early protein HRS)
          Length = 270

 Score = 32.7 bits (73), Expect = 0.64
 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = +3

Query: 231 TGYTVEVTNLSSSASENDLHEFFSFSGPIEHIDLIRSGGYGSTAYVTFKEPYALETAVL- 407
           +G  V +  L+ +A E D+  FF   G I  IDL R  G+G   +V F++P   + AV  
Sbjct: 2   SGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKR--GFG---FVEFEDPRDADDAVYE 56

Query: 408 LSGATIVDQPVCI 446
           L G  +  + V I
Sbjct: 57  LDGKELCSERVTI 69

to top

>SFRS5_RAT (Q09167) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing|
           factor SRP40) (Insulin-induced growth response protein
           CL-4) (Delayed-early protein HRS)
          Length = 269

 Score = 32.7 bits (73), Expect = 0.64
 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = +3

Query: 231 TGYTVEVTNLSSSASENDLHEFFSFSGPIEHIDLIRSGGYGSTAYVTFKEPYALETAVL- 407
           +G  V +  L+ +A E D+  FF   G I  IDL R  G+G   +V F++P   + AV  
Sbjct: 2   SGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKR--GFG---FVEFEDPRDADDAVYE 56

Query: 408 LSGATIVDQPVCI 446
           L G  +  + V I
Sbjct: 57  LDGKELCSERVTI 69

to top

>SFRS5_HUMAN (Q13243) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing|
           factor SRP40) (Delayed-early protein HRS)
          Length = 272

 Score = 32.7 bits (73), Expect = 0.64
 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = +3

Query: 231 TGYTVEVTNLSSSASENDLHEFFSFSGPIEHIDLIRSGGYGSTAYVTFKEPYALETAVL- 407
           +G  V +  L+ +A E D+  FF   G I  IDL R  G+G   +V F++P   + AV  
Sbjct: 2   SGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKR--GFG---FVEFEDPRDADDAVYE 56

Query: 408 LSGATIVDQPVCI 446
           L G  +  + V I
Sbjct: 57  LDGKELCSERVTI 69

to top

>HNRH1_MOUSE (O35737) Heterogeneous nuclear ribonucleoprotein H (hnRNP H)|
          Length = 448

 Score = 32.3 bits (72), Expect = 0.83
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +3

Query: 225 SGTGYTVEVTNLSSSASENDLHEFFSFSGPIE-HIDLIRSGGYGSTAYVTF 374
           S TG+ V +  L   A+END++ FFS   P+  HI++   G     A V F
Sbjct: 284 STTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 334

to top

>HNRH1_HUMAN (P31943) Heterogeneous nuclear ribonucleoprotein H (hnRNP H)|
          Length = 448

 Score = 32.3 bits (72), Expect = 0.83
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +3

Query: 225 SGTGYTVEVTNLSSSASENDLHEFFSFSGPIE-HIDLIRSGGYGSTAYVTF 374
           S TG+ V +  L   A+END++ FFS   P+  HI++   G     A V F
Sbjct: 284 STTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 334

to top

>PPT2_RAT (O70489) Palmitoyl-protein thioesterase 2 precursor (EC 3.1.2.22)|
           (Palmitoyl-protein hydrolase 2) (PPT-2)
          Length = 302

 Score = 32.3 bits (72), Expect = 0.83
 Identities = 21/79 (26%), Positives = 33/79 (41%)
 Frame = +3

Query: 258 LSSSASENDLHEFFSFSGPIEHIDLIRSGGYGSTAYVTFKEPYALETAVLLSGATIVDQP 437
           L S   E+++  F S S P       + G YG T Y+ +  P ++ + +           
Sbjct: 120 LLSVMDEHNVDSFISLSSP-------QMGQYGDTDYLKWLFPTSMRSNLYR--------- 163

Query: 438 VCISRWGQPDEPSNFWDRP 494
           +C S WGQ     N+W  P
Sbjct: 164 ICYSPWGQEFSICNYWHDP 182

to top

>DAZL_BRARE (Q9YGW7) Deleted in azoospermia-like (DAZ-like protein) (zDazl)|
          Length = 229

 Score = 32.3 bits (72), Expect = 0.83
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
 Frame = +3

Query: 231 TGYTVEVTNLSSSASENDLHEFFSFSGPIEHIDLI--RSG---GYGSTAYVTFKEPYALE 395
           T  T+ V  +     EN++ EFF+  G ++ + +I  R G   GYG   +V F E   ++
Sbjct: 45  TPNTLFVGGIDMKVDENEIREFFAKYGSVKEVKIITYRGGICKGYG---FVYFSEDVDIQ 101

Query: 396 TAVLLSGATIVDQPV 440
                   TIVDQP+
Sbjct: 102 --------TIVDQPI 108

to top

>PRP24_YEAST (P49960) U4/U6 snRNA-associated splicing factor PRP24 (U4/U6 snRNP|
           protein)
          Length = 444

 Score = 32.3 bits (72), Expect = 0.83
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +3

Query: 240 TVEVTNLSSSASENDLHEFFSFSGPIEHIDLIRS 341
           TV V NL  S ++N ++++F   GPI H+D+  S
Sbjct: 42  TVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADS 75

to top

>ABI3_HUMAN (Q9P2A4) ABI gene family member 3 (New molecule including SH3)|
           (Nesh)
          Length = 366

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -3

Query: 235 PVPLMIPPSRGLALPPSLQSAECGLVPPPAPRGPN 131
           P+PL +PP      PP L   E GL PPP   GP+
Sbjct: 272 PLPLDLPP------PPPLDGDELGLPPPPPGFGPD 300

to top

>HNRH2_MOUSE (P70333) Heterogeneous nuclear ribonucleoprotein H' (hnRNP H')|
          Length = 449

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +3

Query: 225 SGTGYTVEVTNLSSSASENDLHEFFSFSGPIE-HIDLIRSGGYGSTAYVTF 374
           S TG+ V +  L   A+END++ FFS   P+  HI++   G     A V F
Sbjct: 285 STTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEF 335

to top

>HNRH2_HUMAN (P55795) Heterogeneous nuclear ribonucleoprotein H' (hnRNP H')|
           (FTP-3)
          Length = 449

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +3

Query: 225 SGTGYTVEVTNLSSSASENDLHEFFSFSGPIE-HIDLIRSGGYGSTAYVTF 374
           S TG+ V +  L   A+END++ FFS   P+  HI++   G     A V F
Sbjct: 285 STTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEF 335

to top

>DIAP1_HUMAN (O60610) Protein diaphanous homolog 1 (Diaphanous-related formin-1)|
           (DRF1)
          Length = 1248

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -3

Query: 250 TSTVYPVPLMIPPSRGLALPPSLQSAECGLV--PPPAPRGPNI 128
           ++ + P P  +P S G+  PP     E G+   PPP P GP I
Sbjct: 663 SARIPPPPPPLPGSAGIPPPPPPLPGEAGMPPPPPPLPGGPGI 705

to top

>PPT2_HUMAN (Q9UMR5) Palmitoyl-protein thioesterase 2 precursor (EC 3.1.2.22)|
           (Palmitoyl-protein hydrolase 2) (PPT-2) (G14)
          Length = 302

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 20/79 (25%), Positives = 33/79 (41%)
 Frame = +3

Query: 258 LSSSASENDLHEFFSFSGPIEHIDLIRSGGYGSTAYVTFKEPYALETAVLLSGATIVDQP 437
           L S   ++++  F S S P       + G YG T Y+ +  P ++ + +           
Sbjct: 120 LLSVMDDHNVDSFISLSSP-------QMGQYGDTDYLKWLFPTSMRSNLYR--------- 163

Query: 438 VCISRWGQPDEPSNFWDRP 494
           +C S WGQ     N+W  P
Sbjct: 164 ICYSPWGQEFSICNYWHDP 182

to top

>SFRS7_MOUSE (Q8BL97) Splicing factor, arginine/serine-rich 7|
          Length = 267

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
 Frame = +3

Query: 243 VEVTNLSSSASENDLHEFFSFSGPIEHIDLIRSGGYGSTAYVTFKEPYALETAVL-LSGA 419
           V V NL + A + +L   FS+ GP+  + + R+      A+V F++P   E AV  L G 
Sbjct: 42  VYVGNLGTGAGKGELERAFSYYGPLRTVWIARNP--PGFAFVEFEDPRDAEDAVRGLDGK 99

Query: 420 TIVDQPVCISRWGQPDEPSNFWDRP 494
            I    V +         S F DRP
Sbjct: 100 VICGSRVRVELSTGMPRRSRF-DRP 123

to top

>SFRS7_HUMAN (Q16629) Splicing factor, arginine/serine-rich 7 (Splicing factor|
           9G8)
          Length = 238

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
 Frame = +3

Query: 243 VEVTNLSSSASENDLHEFFSFSGPIEHIDLIRSGGYGSTAYVTFKEPYALETAVL-LSGA 419
           V V NL + A + +L   FS+ GP+  + + R+      A+V F++P   E AV  L G 
Sbjct: 13  VYVGNLGTGAGKGELERAFSYYGPLRTVWIARNP--PGFAFVEFEDPRDAEDAVRGLDGK 70

Query: 420 TIVDQPVCISRWGQPDEPSNFWDRP 494
            I    V +         S F DRP
Sbjct: 71  VICGSRVRVELSTGMPRRSRF-DRP 94

to top

>PPT2_MOUSE (O35448) Palmitoyl-protein thioesterase 2 precursor (EC 3.1.2.22)|
           (Palmitoyl-protein hydrolase 2) (PPT-2)
          Length = 302

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 21/79 (26%), Positives = 32/79 (40%)
 Frame = +3

Query: 258 LSSSASENDLHEFFSFSGPIEHIDLIRSGGYGSTAYVTFKEPYALETAVLLSGATIVDQP 437
           L S    +++  F S S P       + G YG T Y+ +  P ++ + +           
Sbjct: 120 LLSVMDNHNVDSFISLSSP-------QMGQYGDTDYLKWLFPTSMRSNLYR--------- 163

Query: 438 VCISRWGQPDEPSNFWDRP 494
           VC S WGQ     N+W  P
Sbjct: 164 VCYSPWGQEFSICNYWHDP 182

to top

>PCD15_MOUSE (Q99PJ1) Protocadherin-15 precursor|
          Length = 1943

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 238  YPVPLMIPPSRGLALPPSLQSAECGLVPPPAPRGPNI 128
            + +P+  PP+  L LPP L      L PPP P  P +
Sbjct: 1783 FSLPISTPPTSSLPLPPPL-----SLPPPPRPPAPRL 1814

to top

>LECB_PHYAM (Q9AVB0) Lectin-B precursor (PL-B)|
          Length = 361

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 359 CLCDFQGTLCLGNCSIVEWGYHCGSAGVHISLG 457
           C  DF G  CL +    EWG+ CGS+  H   G
Sbjct: 215 CGKDFAGRTCLNDLCCSEWGW-CGSSEAHCGQG 246

to top

>FMN_CHICK (Q05858) Formin (Limb deformity protein)|
          Length = 1213

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -3

Query: 235 PVPLMIPPSRGLA--LPPSLQSAECGLVPPPAPRGPNI 128
           P P   PP  GL   +PP L  +  GL PPP P GP +
Sbjct: 718 PAPPAPPPLPGLGPPVPPPLPGS--GLPPPPPPPGPGL 753

to top

>HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)|
          Length = 429

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
 Frame = +3

Query: 240 TVEVTNLSSSASENDLHEFFSFSGPIEHIDLIRS-GGYGSTAYVTFKEPYALETAV-LLS 413
           ++ V NL+  ++  DL EFFS  G +   D+I S G +     V F     ++ A+    
Sbjct: 137 SIFVGNLTYDSTPEDLTEFFSQIGKVVRADIITSRGHHRGMGTVEFTNSDDVDRAIRQYD 196

Query: 414 GATIVDQPVCISRWGQPDEPSN 479
           GA  +D+ + + +   P  PSN
Sbjct: 197 GAFFMDRKIFVRQDNPP--PSN 216

to top

>HNRH3_HUMAN (P31942) Heterogeneous nuclear ribonucleoprotein H3 (hnRNP H3)|
           (hnRNP 2H9)
          Length = 346

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = +3

Query: 234 GYTVEVTNLSSSASENDLHEFFSFSGPIE-HIDLIRSG---GYGSTAYVTFKEPYA 389
           G+ V +  L   A+END+  FFS   PI  HID+   G   G     +VT ++  A
Sbjct: 194 GHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVA 249

to top

>SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)|
          Length = 303

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
 Frame = +3

Query: 225 SGTGYTVEVTNLSSSASENDLHEFFSFSGPIEHIDL---IRSGGYGSTAYVTFKEPYALE 395
           S +  TV V NL     E ++ + FS  GP+  IDL    R  GY   A+V F +    E
Sbjct: 3   SRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGY---AFVEFDDARDAE 59

Query: 396 TAV 404
            A+
Sbjct: 60  DAI 62

to top

>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)|
           (hnRNP 48) (HRP48.1)
          Length = 421

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
 Frame = +3

Query: 228 GTGYTVEVTNLSSSASENDLHEFFSFSGPIEHIDLI------RSGGYGSTAYVTFKEPYA 389
           G GY V +  L S+ +E DL  FF+  G +  + ++      +S G+G   +++F+E  +
Sbjct: 93  GGGYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFG---FLSFEEESS 149

Query: 390 LE 395
           +E
Sbjct: 150 VE 151

to top

>ITA5_XENLA (Q06274) Integrin alpha-5 precursor (Fibronectin receptor alpha|
            subunit) (Integrin alpha-F) (VLA-5) [Contains: Integrin
            alpha-5 heavy chain; Integrin alpha-5 light chain]
          Length = 1050

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +1

Query: 415  GLPLWISRCAYLVGDSLMSLVISGTGQLGRSRRKLNIGT 531
            G+PLWI   A L+G  L++L+I    +LG  +R    GT
Sbjct: 997  GVPLWIIILAILIGLLLLALLIYVLYKLGFFKRSYQYGT 1035

to top

>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis|
           antigen HuD) (Hu-antigen D)
          Length = 380

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
 Frame = +3

Query: 225 SGTGYTVEVTNLSSSASENDLHEFFSFSGPIEHIDLIRS------GGYGSTAYVTFKEPY 386
           +GTG+ + V NLS  + E+ L + F   G + ++ +IR        G+G      + E  
Sbjct: 293 TGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDE-- 350

Query: 387 ALETAVLLSGATIVDQPVCIS 449
           A      L+G  + D+ + +S
Sbjct: 351 AAMAIASLNGYRLGDRVLQVS 371

to top

>HCN3_RAT (Q9JKA8) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 3
          Length = 780

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -3

Query: 220 IPPSRGLALPP-SLQSAECGLVPPPAPRGPNIAA 122
           +PPS  LA PP ++Q +   +  P  PRGP I+A
Sbjct: 745 LPPSGLLAKPPGTVQPSRSSVPEPVTPRGPQISA 778

to top

>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis|
           antigen HuD) (Hu-antigen D)
          Length = 373

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
 Frame = +3

Query: 225 SGTGYTVEVTNLSSSASENDLHEFFSFSGPIEHIDLIRS------GGYGSTAYVTFKEPY 386
           +GTG+ + V NLS  + E+ L + F   G + ++ +IR        G+G      + E  
Sbjct: 286 TGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDE-- 343

Query: 387 ALETAVLLSGATIVDQPVCIS 449
           A      L+G  + D+ + +S
Sbjct: 344 AAMAIASLNGYRLGDRVLQVS 364

to top

>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis|
           antigen HuD) (Hu-antigen D)
          Length = 385

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
 Frame = +3

Query: 225 SGTGYTVEVTNLSSSASENDLHEFFSFSGPIEHIDLIRS------GGYGSTAYVTFKEPY 386
           +GTG+ + V NLS  + E+ L + F   G + ++ +IR        G+G      + E  
Sbjct: 298 TGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDE-- 355

Query: 387 ALETAVLLSGATIVDQPVCIS 449
           A      L+G  + D+ + +S
Sbjct: 356 AAMAIASLNGYRLGDRVLQVS 376

to top

>COIA1_HUMAN (P39060) Collagen alpha-1(XVIII) chain precursor [Contains:|
           Endostatin]
          Length = 1516

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 214 PSRGLALPPSLQSAECGLVPPPAPRGPNI 128
           PSRG+   P   + E G +P P P  P++
Sbjct: 170 PSRGIPSSPGAHTTEAGTLPAPTPSPPSL 198

to top

>TEGU_HHV11 (P10220) Large tegument protein (Virion protein UL36)|
          Length = 3164

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 88   IWQHPDPPRDPLQRYSGREEQEE 156
            +W++PDPP  P  R+ G E  EE
Sbjct: 2452 LWENPDPPGPPDVRFVGSEATEE 2474

to top

>NENF_HUMAN (Q9UMX5) Neudesin precursor (Neuron-derived neurotrophic factor)|
           (Secreted protein of unknown function) (SPUF protein)
          Length = 172

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -3

Query: 202 LALPPSLQSAECGLVPPPAPRGPNI 128
           LAL P L +A  G  P PA RGP +
Sbjct: 20  LALAPGLPTARAGQTPRPAERGPPV 44

to top

>ITA5_MOUSE (P11688) Integrin alpha-5 precursor (Fibronectin receptor alpha|
            subunit) (Integrin alpha-F) (VLA-5) (CD49e antigen)
            [Contains: Integrin alpha-5 heavy chain; Integrin alpha-5
            light chain]
          Length = 1053

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +1

Query: 415  GLPLWISRCAYLVGDSLMSLVISGTGQLGRSRRKLNIGT 531
            G+PLWI   A L G  L+ L+I    +LG  +R L  GT
Sbjct: 1000 GVPLWIIILAILFGLLLLGLLIYVLYKLGFFKRSLPYGT 1038

to top

>RX_DROME (Q9W2Q1) Retinal homeobox protein Rx (DRx1) (DRx)|
          Length = 873

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = -1

Query: 519 QFPPRPAKLACPRNY*AHQAVPNEICTPADPQW*PHSTILQFPRHRV 379
           Q PP P     P  + +H  VP    +P   +  PH+T L  P H V
Sbjct: 684 QPPPPPPPHGVPHPHGSHHVVPLSHLSPHLSRMSPHATSLGSPHHGV 730

to top

>DIAP1_MOUSE (O08808) Protein diaphanous homolog 1 (Diaphanous-related formin-1)|
           (DRF1) (mDIA1) (p140mDIA)
          Length = 1255

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = -3

Query: 250 TSTVYPVPLMIPPSRGLALPPS--LQSAECGLVPPPAPRG 137
           + TV P P   PP  G  +PPS  L    C   PPP P G
Sbjct: 581 SGTVIPPPPPPPPLPGGVVPPSPPLPPGTCIPPPPPLPGG 620

to top

>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein|
           19)
          Length = 952

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
 Frame = +3

Query: 249 VTNLSSSASENDLHEFFSFSGPIEH----IDLIRSGGYGSTAYVTFKEP 383
           V NLS ++SE DL + FS  GP+      ID +     G  A+VTF  P
Sbjct: 404 VRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKG-FAFVTFMFP 451

to top

>ARGJ_BACHK (Q6HE29) Arginine biosynthesis bifunctional protein argJ [Includes:|
           Glutamate N-acetyltransferase (EC 2.3.1.35) (Ornithine
           acetyltransferase) (Ornithine transacetylase) (OATase);
           Amino-acid acetyltransferase (EC 2.3.1.1)
           (N-acetylglutamate syn
          Length = 408

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = -3

Query: 352 PYPPDLIRS-ICSIGPENEKNS*RSFSDALL--DRLVTSTVYPVPL 224
           P P D+IR  I ++ P  E+N   SFS+A+L  D +   T Y + +
Sbjct: 127 PLPMDIIRKGIATLIPAKEENEAHSFSEAILTTDLITKETCYEMSI 172

to top

>CG1_HUMAN (Q13495) CG1 protein (F18)|
          Length = 701

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = -3

Query: 235 PVPLMIPPSRGLALPPSLQSAECGLVPPPAPRGP 134
           P P + PPSR +   PSLQ     L PPP P  P
Sbjct: 259 PPPGLSPPSRPV---PSLQPPPLPLPPPPPPFSP 289

to top

>GNAQ_HOMAM (P91950) Guanine nucleotide-binding protein G(q) subunit alpha|
           (Guanine nucleotide-binding protein alpha-q)
          Length = 353

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = +3

Query: 306 SGPIEHIDLIRSGGYGSTAYVTFKEPY 386
           S  IEH DL+RS  Y S    TF+EPY
Sbjct: 98  SANIEHADLVRSVDYESV--TTFEEPY 122

to top

>ITA5_HUMAN (P08648) Integrin alpha-5 precursor (Fibronectin receptor alpha|
            subunit) (Integrin alpha-F) (VLA-5) (CD49e antigen)
            [Contains: Integrin alpha-5 heavy chain; Integrin alpha-5
            light chain]
          Length = 1049

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +1

Query: 415  GLPLWISRCAYLVGDSLMSLVISGTGQLGRSRRKLNIGT 531
            G+PLWI   A L G  L+ L+I    +LG  +R L  GT
Sbjct: 996  GVPLWIIILAILFGLLLLGLLIYILYKLGFFKRSLPYGT 1034

to top

>ABI3_MOUSE (Q8BYZ1) ABI gene family member 3 (New molecule including SH3)|
           (Nesh)
          Length = 367

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = -3

Query: 235 PVPLMIPPSRG---LALPPSLQSAECGLVPPPAP 143
           P+ +  PP      L  PP+L+  E GL+PPP P
Sbjct: 263 PLEVSQPPLEAELPLPPPPALEGDELGLLPPPPP 296

to top

>HCN3_MOUSE (O88705) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 3 (Hyperpolarization-activated
           cation channel 3) (HAC-3)
          Length = 779

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -3

Query: 220 IPPSRGLALPPSLQSAECGLVPPPA-PRGPNIAA 122
           +PPS  LA PP         VP P  PRGP I+A
Sbjct: 744 LPPSGLLAKPPGTVQPPRSSVPEPVTPRGPQISA 777


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,222,165
Number of Sequences: 219361
Number of extensions: 1546203
Number of successful extensions: 5235
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 4686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5197
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4085413911
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result