ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd22i03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF391453.1| Acanthogobius flavimanus NADH dehydrogenase subun... 48 0.045
2gb|AC132573.2| Mus musculus BAC clone RP24-410H24 from chromosom... 46 0.18
3gb|AC108837.8| Mus musculus chromosome 15, clone RP23-287P15, co... 46 0.18
4ref|XM_462873.1| Oryza sativa (japonica cultivar-group), predic... 44 0.71
5gb|BC080208.1| Danio rerio cDNA clone IMAGE:7138472, partial cds 44 0.71
6gb|AC140279.4| Mus musculus BAC clone RP23-338N10 from chromosom... 44 0.71
7gb|BC054666.1| Danio rerio zgc:66241, mRNA (cDNA clone MGC:66241... 44 0.71
8gb|AC117256.4| Mus musculus BAC clone RP24-483G23 from chromosom... 44 0.71
9gb|AC111044.9| Mus musculus chromosome 10, clone RP23-299H4, com... 44 0.71
10gb|AC175363.2| Pan troglodytes chromosome X clone CH251-7A1 map ... 44 0.71
11gb|BC045558.1| Homo sapiens cDNA clone IMAGE:4792815 44 0.71
12gb|BC037812.1| Homo sapiens cDNA clone IMAGE:4798202 44 0.71
13ref|NM_199745.1| Danio rerio zgc:66241 (zgc:66241), mRNA 44 0.71
14gb|AC158240.5| Pan troglodytes BAC clone CH251-542M19 from chrom... 44 0.71
15ref|XM_696225.1| PREDICTED: Danio rerio similar to MGC82685 prot... 44 0.71
16ref|XM_697002.1| PREDICTED: Danio rerio hypothetical protein LOC... 44 0.71
17gb|AF312033.1|AF312033 Mus musculus acetylcholinesterase (Ache) ... 44 0.71
18dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.71
19gb|AC009955.4|AC009955 Homo sapiens BAC clone RP11-256I23 from 2... 44 0.71
20dbj|AP003257.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.71
21dbj|AK062630.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.71
22gb|AC005901.1|AC005901 Homo sapiens chromosome 17, clone hRPK.15... 44 0.71
23gb|AC174647.2| Mus musculus BAC clone RP23-25C24 from chromosome... 44 0.71
24gb|AC145744.3| Mus musculus BAC clone RP24-142P6 from 16, comple... 44 0.71
25gb|AC150682.2| Mus musculus BAC clone RP24-210N1 from 5, complet... 44 0.71
26gb|AC171241.2| Mus musculus BAC clone RP23-94E5 from chromosome ... 44 0.71
27gb|AC168117.2| Mus musculus BAC clone RP23-461G13 from chromosom... 42 2.8
28ref|XM_483438.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.8
29ref|XM_476506.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.8
30gb|AC107843.10| Mus musculus chromosome 1, clone RP23-306B14, co... 42 2.8
31gb|AC099025.2| Drosophila melanogaster clone BACR04O19, complete... 42 2.8
32gb|AC121595.3| Mus musculus BAC clone RP23-299A12 from chromosom... 42 2.8
33gb|AC131675.4| Mus musculus BAC clone RP23-328L1 from chromosome... 42 2.8
34gb|AC162871.2| Mus musculus chromosome 1, clone RP24-330F8, comp... 42 2.8
35ref|XM_784060.1| PREDICTED: Strongylocentrotus purpuratus hypoth... 42 2.8
36emb|AL049541.24|HSJ991B18 Human DNA sequence from clone RP5-991B... 42 2.8
37emb|X83578.1|NCMTACP N.crassa mitochondrial ACP gene 42 2.8
38gb|AC025678.7| Homo sapiens chromosome 15, clone RP11-602M11, co... 42 2.8
39gb|AC068627.16| Mus Musculus Chromosome 5 RP23-389F6, complete s... 42 2.8
40gb|AC068496.7| Mus musculus chromosome 3 clone RP23-75F13 clone ... 42 2.8
41gb|AC074354.8|AC074354 Genomic Sequence for Oryza sativa, Nippon... 42 2.8
42dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.8
43dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.8
44dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.8
45gb|AC158937.4| Mus musculus chromosome 3, clone RP23-290L18, com... 42 2.8
46gb|AF323786.1|AF323786 Oryza sativa subsp. indica KNOX class hom... 42 2.8
47emb|BX842598.1| Neurospora crassa DNA linkage group II BAC clone... 42 2.8
48dbj|AP006172.4| Oryza sativa (japonica cultivar-group) genomic D... 42 2.8
49emb|BX548056.3| Mouse DNA sequence from clone RP23-240D4 on chro... 42 2.8
50dbj|AP003857.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.8
51dbj|AK111877.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.8
52gb|AC129199.3| Mus musculus BAC clone RP24-220I4 from 7, complet... 42 2.8
53gb|AC110033.9| Mus musculus chromosome 1, clone RP23-117O18, com... 42 2.8
54gb|AE003808.4| Drosophila melanogaster chromosome 2R, section 42... 42 2.8
55gb|AF050181.1|AF050181 Oryza sativa strain Indica IR58 KNOX clas... 42 2.8
56dbj|AP004301.2| Oryza sativa (japonica cultivar-group) genomic D... 42 2.8
57gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 2.8
58gb|AC004248.1|AC004248 Drosophila melanogaster (P1 DS03910 (D165... 42 2.8
59gb|AC073883.34| Mus musculus strain C57BL/6J chromosome 3 clone ... 42 2.8
60emb|AL669982.10| Mouse DNA sequence from clone RP23-297N24 on ch... 42 2.8
61dbj|AP002920.1| Saurida undosquamis mitochondrial DNA, complete ... 42 2.8
62dbj|AB016071.1| Oryza sativa (japonica cultivar-group) mRNA, com... 42 2.8
63dbj|AB007623.1| Oryza sativa (japonica cultivar-group) Hos3 mRNA... 42 2.8
64emb|AL592303.15| Mouse DNA sequence from clone RP23-238L2 on chr... 42 2.8 
>gb|AF391453.1| Acanthogobius flavimanus NADH dehydrogenase subunit 1 gene,
           complete cds; mitochondrial gene for mitochondrial
           product
          Length = 975

 Score = 48.1 bits (24), Expect = 0.045
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 570 ggggaaggcctgcaagggctagtg 593
           ||||||||||||||||||||||||
Sbjct: 964 ggggaaggcctgcaagggctagtg 941
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>gb|AC132573.2| Mus musculus BAC clone RP24-410H24 from chromosome 15, complete sequence
          Length = 194219

 Score = 46.1 bits (23), Expect = 0.18
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 614    gatgaggaggaggagcagggggg 636
              |||||||||||||||||||||||
Sbjct: 187089 gatgaggaggaggagcagggggg 187067
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>gb|AC108837.8| Mus musculus chromosome 15, clone RP23-287P15, complete sequence
          Length = 226886

 Score = 46.1 bits (23), Expect = 0.18
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 614    gatgaggaggaggagcagggggg 636
              |||||||||||||||||||||||
Sbjct: 113467 gatgaggaggaggagcagggggg 113445
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>ref|XM_462873.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 672

 Score = 44.1 bits (22), Expect = 0.71
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 611 gaggatgaggaggaggagcagggggg 636
           |||||||||||||||||| |||||||
Sbjct: 400 gaggatgaggaggaggaggagggggg 425
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>gb|BC080208.1| Danio rerio cDNA clone IMAGE:7138472, partial cds
          Length = 1885

 Score = 44.1 bits (22), Expect = 0.71
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 610  tgaggatgaggaggaggagcag 631
            ||||||||||||||||||||||
Sbjct: 1379 tgaggatgaggaggaggagcag 1400
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>gb|AC140279.4| Mus musculus BAC clone RP23-338N10 from chromosome 16, complete
             sequence
          Length = 211002

 Score = 44.1 bits (22), Expect = 0.71
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 88    ggatggggaagagcagggagga 109
             ||||||||||||||||||||||
Sbjct: 19157 ggatggggaagagcagggagga 19136
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>gb|BC054666.1| Danio rerio zgc:66241, mRNA (cDNA clone MGC:66241 IMAGE:3818929),
            complete cds
          Length = 2172

 Score = 44.1 bits (22), Expect = 0.71
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 610  tgaggatgaggaggaggagcag 631
            ||||||||||||||||||||||
Sbjct: 1045 tgaggatgaggaggaggagcag 1066
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>gb|AC117256.4| Mus musculus BAC clone RP24-483G23 from chromosome 16, complete
             sequence
          Length = 167118

 Score = 44.1 bits (22), Expect = 0.71
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 88    ggatggggaagagcagggagga 109
             ||||||||||||||||||||||
Sbjct: 73592 ggatggggaagagcagggagga 73613
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>gb|AC111044.9| Mus musculus chromosome 10, clone RP23-299H4, complete sequence
          Length = 165614

 Score = 44.1 bits (22), Expect = 0.71
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 611    gaggatgaggaggaggagcagg 632
              ||||||||||||||||||||||
Sbjct: 135617 gaggatgaggaggaggagcagg 135596
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>gb|AC175363.2| Pan troglodytes chromosome X clone CH251-7A1 map human ortholog p11.4,
             complete sequence
          Length = 221738

 Score = 44.1 bits (22), Expect = 0.71
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 612   aggatgaggaggaggagcaggg 633
             ||||||||||||||||||||||
Sbjct: 84692 aggatgaggaggaggagcaggg 84713
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>gb|BC045558.1| Homo sapiens cDNA clone IMAGE:4792815
          Length = 1651

 Score = 44.1 bits (22), Expect = 0.71
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 446 aaggaagcgggggaagagaaggagga 471
           ||||||| ||||||||||||||||||
Sbjct: 898 aaggaagagggggaagagaaggagga 873
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>gb|BC037812.1| Homo sapiens cDNA clone IMAGE:4798202
          Length = 1656

 Score = 44.1 bits (22), Expect = 0.71
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 446 aaggaagcgggggaagagaaggagga 471
           ||||||| ||||||||||||||||||
Sbjct: 902 aaggaagagggggaagagaaggagga 877
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>ref|NM_199745.1| Danio rerio zgc:66241 (zgc:66241), mRNA
          Length = 2172

 Score = 44.1 bits (22), Expect = 0.71
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 610  tgaggatgaggaggaggagcag 631
            ||||||||||||||||||||||
Sbjct: 1045 tgaggatgaggaggaggagcag 1066
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>gb|AC158240.5| Pan troglodytes BAC clone CH251-542M19 from chromosome unknown, complete
              sequence
          Length = 217064

 Score = 44.1 bits (22), Expect = 0.71
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 446    aaggaagcgggggaagagaaggagga 471
              ||||||| ||||||||||||||||||
Sbjct: 111878 aaggaagagggggaagagaaggagga 111853
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>ref|XM_696225.1| PREDICTED: Danio rerio similar to MGC82685 protein (LOC572502),
            partial mRNA
          Length = 2450

 Score = 44.1 bits (22), Expect = 0.71
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 610  tgaggatgaggaggaggagcag 631
            ||||||||||||||||||||||
Sbjct: 1998 tgaggatgaggaggaggagcag 2019
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>ref|XM_697002.1| PREDICTED: Danio rerio hypothetical protein LOC554945 (LOC554945),
           mRNA
          Length = 800

 Score = 44.1 bits (22), Expect = 0.71
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 610 tgaggatgaggaggaggagcag 631
           ||||||||||||||||||||||
Sbjct: 603 tgaggatgaggaggaggagcag 624
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>gb|AF312033.1|AF312033 Mus musculus acetylcholinesterase (Ache) and D5Ertd655e genes, complete
             cds; ASR2 (Asr2) gene, complete cds, alternatively
             spliced; TRIP6 (Trip6), CIP1 (Cip1), EPHB4 (Ephb4), ZAN
             (Zan), EPO (Epo), RPP20 (Rpp20), PERQ1 (Perq1), GNB2
             (Gnb2), and BAF53B (Baf53b) genes, complete cds; and TFR2
             (Tfr2) gene, partial cds
          Length = 296820

 Score = 44.1 bits (22), Expect = 0.71
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 611   gaggatgaggaggaggagcagg 632
             ||||||||||||||||||||||
Sbjct: 20939 gaggatgaggaggaggagcagg 20960
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.71
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 611      gaggatgaggaggaggagcagggggg 636
                |||||||||||||||||| |||||||
Sbjct: 14752387 gaggatgaggaggaggaggagggggg 14752412
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>gb|AC009955.4|AC009955 Homo sapiens BAC clone RP11-256I23 from 2, complete sequence
          Length = 135033

 Score = 44.1 bits (22), Expect = 0.71
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 446   aaggaagcgggggaagagaaggagga 471
             ||||||| ||||||||||||||||||
Sbjct: 44430 aaggaagagggggaagagaaggagga 44405
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>dbj|AP003257.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0460H02
          Length = 155012

 Score = 44.1 bits (22), Expect = 0.71
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 611    gaggatgaggaggaggagcagggggg 636
              |||||||||||||||||| |||||||
Sbjct: 121487 gaggatgaggaggaggaggagggggg 121512
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>dbj|AK062630.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-105-C07, full
           insert sequence
          Length = 609

 Score = 44.1 bits (22), Expect = 0.71
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 611 gaggatgaggaggaggagcagggggg 636
           |||||||||||||||||| |||||||
Sbjct: 238 gaggatgaggaggaggaggagggggg 263
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>gb|AC005901.1|AC005901 Homo sapiens chromosome 17, clone hRPK.15_K_2, complete sequence
          Length = 156763

 Score = 44.1 bits (22), Expect = 0.71
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 87     aggatggggaagagcagggagg 108
              ||||||||||||||||||||||
Sbjct: 114296 aggatggggaagagcagggagg 114275
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>gb|AC174647.2| Mus musculus BAC clone RP23-25C24 from chromosome 14, complete sequence
          Length = 238300

 Score = 44.1 bits (22), Expect = 0.71
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 610    tgaggatgaggaggaggagcaggggg 635
              ||||||||||||||||||| ||||||
Sbjct: 221726 tgaggatgaggaggaggaggaggggg 221701
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>gb|AC145744.3| Mus musculus BAC clone RP24-142P6 from 16, complete sequence
          Length = 207240

 Score = 44.1 bits (22), Expect = 0.71
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 88    ggatggggaagagcagggagga 109
             ||||||||||||||||||||||
Sbjct: 86929 ggatggggaagagcagggagga 86950
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>gb|AC150682.2| Mus musculus BAC clone RP24-210N1 from 5, complete sequence
          Length = 164951

 Score = 44.1 bits (22), Expect = 0.71
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 611   gaggatgaggaggaggagcagg 632
             ||||||||||||||||||||||
Sbjct: 29595 gaggatgaggaggaggagcagg 29616
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>gb|AC171241.2| Mus musculus BAC clone RP23-94E5 from chromosome 14, complete sequence
          Length = 244795

 Score = 44.1 bits (22), Expect = 0.71
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 610    tgaggatgaggaggaggagcaggggg 635
              ||||||||||||||||||| ||||||
Sbjct: 129417 tgaggatgaggaggaggaggaggggg 129392
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>gb|AC168117.2| Mus musculus BAC clone RP23-461G13 from chromosome 17, complete
             sequence
          Length = 169205

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 611   gaggatgaggaggaggagcaggggggaaa 639
             ||||| |||||||||||| ||||||||||
Sbjct: 68710 gaggaggaggaggaggaggaggggggaaa 68738
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>ref|XM_483438.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 792

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 611 gaggatgaggaggaggagcaggggg 635
           ||||| |||||||||||||||||||
Sbjct: 439 gaggaggaggaggaggagcaggggg 463
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>ref|XM_476506.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1068

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 617 gaggaggaggagcagggggga 637
           |||||||||||||||||||||
Sbjct: 29  gaggaggaggagcagggggga 49
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>gb|AC107843.10| Mus musculus chromosome 1, clone RP23-306B14, complete sequence
          Length = 180315

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 90     atggggaagagcagggaggaa 110
              |||||||||||||||||||||
Sbjct: 113094 atggggaagagcagggaggaa 113074
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>gb|AC099025.2| Drosophila melanogaster clone BACR04O19, complete sequence
          Length = 160827

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 610   tgaggatgaggaggaggagca 630
             |||||||||||||||||||||
Sbjct: 85773 tgaggatgaggaggaggagca 85793
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>gb|AC121595.3| Mus musculus BAC clone RP23-299A12 from chromosome X, complete sequence
          Length = 214297

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 615   atgaggaggaggagcaggggggaaa 639
             |||||||||||||| ||||||||||
Sbjct: 60929 atgaggaggaggaggaggggggaaa 60905
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>gb|AC131675.4| Mus musculus BAC clone RP23-328L1 from chromosome 18, complete sequence
          Length = 191085

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 446    aaggaagcgggggaagagaaggaggacaa 474
              |||||||| | ||||||||||||||||||
Sbjct: 154707 aaggaagcagaggaagagaaggaggacaa 154679
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>gb|AC162871.2| Mus musculus chromosome 1, clone RP24-330F8, complete sequence
          Length = 126140

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 447    aggaagcgggggaagagaaggagga 471
              |||||| ||||||||||||||||||
Sbjct: 121313 aggaagtgggggaagagaaggagga 121337
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>ref|XM_784060.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein
           LOC584186 (LOC584186), mRNA
          Length = 3318

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 611 gaggatgaggaggaggagcag 631
           |||||||||||||||||||||
Sbjct: 805 gaggatgaggaggaggagcag 825
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>emb|AL049541.24|HSJ991B18 Human DNA sequence from clone RP5-991B18 on chromosome 20q13.11-13.3
             Contains a putative novel gene, ESTs, STSs and GSSs,
             complete sequence
          Length = 129874

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 611   gaggatgaggaggaggagcaggggg 635
             ||||| |||||||||||||||||||
Sbjct: 51610 gaggaagaggaggaggagcaggggg 51634
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>emb|X83578.1|NCMTACP N.crassa mitochondrial ACP gene
          Length = 1994

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 611 gaggatgaggaggaggagcag 631
           |||||||||||||||||||||
Sbjct: 645 gaggatgaggaggaggagcag 665
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>gb|AC025678.7| Homo sapiens chromosome 15, clone RP11-602M11, complete sequence
          Length = 189533

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 447    aggaagcgggggaagagaaggagga 471
              |||||| ||||||||||||||||||
Sbjct: 102799 aggaagtgggggaagagaaggagga 102775
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>gb|AC068627.16| Mus Musculus Chromosome 5 RP23-389F6, complete sequence
          Length = 180673

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 611   gaggatgaggaggaggagcaggggggaaa 639
             ||||| |||||||||||| ||||||||||
Sbjct: 64739 gaggaggaggaggaggaggaggggggaaa 64767
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>gb|AC068496.7| Mus musculus chromosome 3 clone RP23-75F13 clone RP23-75F13, complete
             sequence
          Length = 136268

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 611   gaggatgaggaggaggagcaggggg 635
             ||||| |||||||||||||||||||
Sbjct: 64417 gaggaagaggaggaggagcaggggg 64393
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>gb|AC074354.8|AC074354 Genomic Sequence for Oryza sativa, Nipponbare strain, clone
            OSJNBa0065C16, from Chromosome 10, complete sequence
          Length = 146391

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 611  gaggatgaggaggaggagcaggggg 635
            ||||| |||||||||||||||||||
Sbjct: 4642 gaggaggaggaggaggagcaggggg 4618
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 611     gaggatgaggaggaggagcaggggg 635
               ||||| |||||||||||||||||||
Sbjct: 8516148 gaggaggaggaggaggagcaggggg 8516172
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 611      gaggatgaggaggaggagcaggggg 635
                ||||| |||||||||||||||||||
Sbjct: 26224899 gaggaggaggaggaggagcaggggg 26224875
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 617     gaggaggaggagcagggggga 637
               |||||||||||||||||||||
Sbjct: 1598433 gaggaggaggagcagggggga 1598453
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>gb|AC158937.4| Mus musculus chromosome 3, clone RP23-290L18, complete sequence
          Length = 196087

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 611    gaggatgaggaggaggagcaggggg 635
              ||||| |||||||||||||||||||
Sbjct: 105981 gaggaagaggaggaggagcaggggg 106005
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>gb|AF323786.1|AF323786 Oryza sativa subsp. indica KNOX class homeodomain protein (Oskn3)
            gene, partial cds
          Length = 5865

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 617  gaggaggaggagcagggggga 637
            |||||||||||||||||||||
Sbjct: 1844 gaggaggaggagcagggggga 1864
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>emb|BX842598.1| Neurospora crassa DNA linkage group II BAC clone B8L10
          Length = 73541

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 611   gaggatgaggaggaggagcag 631
             |||||||||||||||||||||
Sbjct: 43113 gaggatgaggaggaggagcag 43133
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>dbj|AP006172.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0088O14
          Length = 179483

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 617   gaggaggaggagcagggggga 637
             |||||||||||||||||||||
Sbjct: 67088 gaggaggaggagcagggggga 67108
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>emb|BX548056.3| Mouse DNA sequence from clone RP23-240D4 on chromosome X, complete
             sequence
          Length = 110099

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 615   atgaggaggaggagcaggggggaaa 639
             |||||||||||||| ||||||||||
Sbjct: 72436 atgaggaggaggaggaggggggaaa 72460
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>dbj|AP003857.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1014_E06
          Length = 112241

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 611   gaggatgaggaggaggagcaggggg 635
             ||||| |||||||||||||||||||
Sbjct: 57824 gaggaggaggaggaggagcaggggg 57800
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>dbj|AK111877.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044D23, full
           insert sequence
          Length = 1467

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 617 gaggaggaggagcagggggga 637
           |||||||||||||||||||||
Sbjct: 160 gaggaggaggagcagggggga 180
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>gb|AC129199.3| Mus musculus BAC clone RP24-220I4 from 7, complete sequence
          Length = 159262

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 415   gaagaagaacatggaacctca 435
             |||||||||||||||||||||
Sbjct: 62429 gaagaagaacatggaacctca 62409
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>gb|AC110033.9| Mus musculus chromosome 1, clone RP23-117O18, complete sequence
          Length = 260404

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 90     atggggaagagcagggaggaa 110
              |||||||||||||||||||||
Sbjct: 218517 atggggaagagcagggaggaa 218537
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>gb|AE003808.4| Drosophila melanogaster chromosome 2R, section 42 of 73 of the complete
              sequence
          Length = 260367

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 610    tgaggatgaggaggaggagca 630
              |||||||||||||||||||||
Sbjct: 112028 tgaggatgaggaggaggagca 112048
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>gb|AF050181.1|AF050181 Oryza sativa strain Indica IR58 KNOX class homeodomain protein
           (Oskn3) mRNA, complete cds
          Length = 1357

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 617 gaggaggaggagcagggggga 637
           |||||||||||||||||||||
Sbjct: 140 gaggaggaggagcagggggga 160
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>dbj|AP004301.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
            clone:P0483E09
          Length = 69300

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 617  gaggaggaggagcagggggga 637
            |||||||||||||||||||||
Sbjct: 7586 gaggaggaggagcagggggga 7606
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 611     gaggatgaggaggaggagcaggggg 635
               ||||| |||||||||||||||||||
Sbjct: 8521247 gaggaggaggaggaggagcaggggg 8521271
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>gb|AC004248.1|AC004248 Drosophila melanogaster (P1 DS03910 (D165)) DNA sequence, complete
             sequence
          Length = 77409

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 610   tgaggatgaggaggaggagca 630
             |||||||||||||||||||||
Sbjct: 76737 tgaggatgaggaggaggagca 76717
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>gb|AC073883.34| Mus musculus strain C57BL/6J chromosome 3 clone rp23-71e13, complete
              sequence
          Length = 213482

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 611    gaggatgaggaggaggagcaggggg 635
              ||||| |||||||||||||||||||
Sbjct: 138922 gaggaagaggaggaggagcaggggg 138898
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>emb|AL669982.10| Mouse DNA sequence from clone RP23-297N24 on chromosome 4, complete
             sequence
          Length = 240125

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 611   gaggatgaggaggaggagcaggggg 635
             ||||| |||||||||||||||||||
Sbjct: 52921 gaggaggaggaggaggagcaggggg 52897
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>dbj|AP002920.1| Saurida undosquamis mitochondrial DNA, complete genome, except for
             D-loop
          Length = 15737

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 608   cttgaggatgaggaggaggag 628
             |||||||||||||||||||||
Sbjct: 11678 cttgaggatgaggaggaggag 11658
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>dbj|AB016071.1| Oryza sativa (japonica cultivar-group) mRNA, complete cds
          Length = 1531

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 617 gaggaggaggagcagggggga 637
           |||||||||||||||||||||
Sbjct: 122 gaggaggaggagcagggggga 142
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>dbj|AB007623.1| Oryza sativa (japonica cultivar-group) Hos3 mRNA, partial cds
          Length = 1626

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 617 gaggaggaggagcagggggga 637
           |||||||||||||||||||||
Sbjct: 217 gaggaggaggagcagggggga 237
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>emb|AL592303.15| Mouse DNA sequence from clone RP23-238L2 on chromosome 1, complete
              sequence
          Length = 146855

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 447    aggaagcgggggaagagaaggagga 471
              |||||| ||||||||||||||||||
Sbjct: 117994 aggaagtgggggaagagaaggagga 118018


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,911,392
Number of Sequences: 3902068
Number of extensions: 6911392
Number of successful extensions: 403262
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 402480
Number of HSP's gapped (non-prelim): 767
length of query: 805
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 782
effective length of database: 17,143,297,704
effective search space: 13406058804528
effective search space used: 13406058804528
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
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