ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd22h16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1POF13_SCHPO (O94334) F-box protein pof13 32 1.6
2CLAT_HUMAN (P28329) Choline O-acetyltransferase (EC 2.3.1.6) (CH... 31 3.5
3ZN580_MOUSE (Q9DB38) Zinc finger protein 580 30 4.6

>POF13_SCHPO (O94334) F-box protein pof13|
          Length = 396

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 148 TLTPVIFGSYLVFRVCLDLVPLAQPAPKQCFTPRCPVNCC 29
           TLT       ++F+  LD +P     P +C   RCP+N C
Sbjct: 223 TLTSNWHSRVILFQNALDALPTTHGNPVECDISRCPLNAC 262



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>CLAT_HUMAN (P28329) Choline O-acetyltransferase (EC 2.3.1.6) (CHOACTase)|
           (Choline acetylase) (ChAT)
          Length = 748

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 20/62 (32%), Positives = 25/62 (40%)
 Frame = -1

Query: 422 ASL*GGTLPYRCILTSHSFGRSLSPVHLQRKGARSVSYYALFKGWLLLGKPPGCLCTPTS 243
           ASL  G L Y+ +L SHS     +   L  +      YY LF  + L G     L    S
Sbjct: 236 ASLISGVLSYKALLDSHSIPTDCAKGQLSGQPLCMKQYYGLFSSYRLPGHTQDTLVAQNS 295

Query: 242 FI 237
            I
Sbjct: 296 SI 297



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>ZN580_MOUSE (Q9DB38) Zinc finger protein 580|
          Length = 172

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 493 IQCPENPRFPPQGSSTEGESGPK 561
           +Q  E PR PPQ  +T GE GP+
Sbjct: 67  VQLEEEPRGPPQREATPGEPGPR 89


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,760,057
Number of Sequences: 219361
Number of extensions: 1948866
Number of successful extensions: 4994
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4991
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5938641176
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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