>GAG_SIVSP (P19504) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24]
          Length = 507

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = +1

Query: 220 ETDFLGLGFFEKKRYQGPPPGLSQGIDPFSNEDFPEVEIVIGDPSKFGKSRRSTENQP 393
           +  FLGLG + KK    P   + QG+ P +  + P V++ + +  K G+ +R    +P
Sbjct: 432 QAGFLGLGPWGKKPRNFPMAQMPQGLTPTAPPEDPAVDL-LKNYMKMGRRQRENRERP 488

>GAG_SIVMK (P05893) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24]
          Length = 506

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 17/58 (29%), Positives = 31/58 (53%)
 Frame = +1

Query: 220 ETDFLGLGFFEKKRYQGPPPGLSQGIDPFSNEDFPEVEIVIGDPSKFGKSRRSTENQP 393
           +  FLGLG + KK    P   + QG+ P +  + P V++ + +  + GK +R +  +P
Sbjct: 431 QAGFLGLGPWGKKPRNFPMAQVHQGLTPTAPPEDPAVDL-LKNYMQLGKQQRESREKP 487

>GAG_SIVS4 (P12496) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24]
          Length = 507

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = +1

Query: 220 ETDFLGLGFFEKKRYQGPPPGLSQGIDPFSNEDFPEVEIVIGDPSKFGKSRRSTENQP 393
           +  FLGLG + KK    P   + QG+ P +  + P V++ + +  K G+ +R    +P
Sbjct: 432 QAGFLGLGPWGKKPRNFPMAQMPQGLIPTAPPEDPAVDL-LKNYMKMGRKQRENRERP 488

>GAG_SIVM1 (P05894) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24]
          Length = 506

 Score = 29.6 bits (65), Expect = 4.3
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = +1

Query: 220 ETDFLGLGFFEKKRYQGPPPGLSQGIDPFSNEDFPEVEIVIGDPSKFGKSRRSTENQP 393
           +  FLGLG + KK    P   + QG+ P +  + P V++ + +    GK +R +  +P
Sbjct: 431 QAGFLGLGPWGKKPRNFPMAQVHQGLTPTAPPEEPAVDL-LKNYMHLGKQQRESRGKP 487

>GATA4_HUMAN (P43694) Transcription factor GATA-4 (GATA-binding factor 4)|
          Length = 442

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 6   ASPSAAAFREGVRREQGGLRAGAGVQER-QRGRAG 107
           A+ +AAA RE      GG  AGAG+  R Q GRAG
Sbjct: 119 AAAAAAAAREAAAYSSGGGAAGAGLAGREQYGRAG 153

>ARP6_CRYNE (Q5KAQ4) Actin-like protein ARP6|
          Length = 490

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = +1

Query: 241 GFFEKKRYQGPPPGLSQGIDPFS--NEDFPEVEIVIG-DPSKFGKSRRSTENQPV 396
           G F    Y   PPG S G+D  +  ++D  E+   +G +  K GK +R  E + V
Sbjct: 418 GSFGAPAYNIDPPGFSSGVDARTEVSDDEMEMRYAMGLESKKGGKGKRRKEEEEV 472

>RS3_SYMTH (Q67JU9) 30S ribosomal protein S3|
          Length = 267

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +3

Query: 6   ASPSAAAFRE--GVRREQGGLRAGAGVQERQRGRAGRRLGSSQSVAAFR 146
           A  +AA  R   G RRE+GG R G G     RG+ G+R+   +  A  R
Sbjct: 208 AQKAAAGDRRERGERRERGGRRGGRG-----RGQGGQRMSREERAALER 251

>WOX9_ARATH (Q6X7J4) WUSCHEL-related homeobox 9|
          Length = 378

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
 Frame = -3

Query: 340 LLSPPRENLHLKKDQFLETALVVDLDNVFSQRNRGPKSR-------SHRMHTLPFSLPFC 182
           +++PPRE +   + Q  E   V D +  +  +NR  +S+       +H  H+LP + P  
Sbjct: 74  MVNPPREEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRLLHNHSKHSLPQTQPQP 133

Query: 181 QMHP 170
           Q  P
Sbjct: 134 QPQP 137


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.308    0.135    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,125,811
Number of Sequences: 219361
Number of extensions: 1278069
Number of successful extensions: 2851
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2850
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3246866728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)