ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd22h01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_475171.1| Oryza sativa (japonica cultivar-group), predic... 103 5e-19
2gb|AC136222.2| Oryza sativa (japonica cultivar-group) chromosome... 103 5e-19
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 103 5e-19
4dbj|AK064935.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 5e-19
5ref|XM_469134.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.11
6gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 46 0.11
7gb|AC137991.3| Oryza sativa chromosome 3 BAC OSJNBa0034D21 genom... 46 0.11
8gb|AC139174.3| Oryza sativa chromosome 3 BAC OSJNBb0065L20 genom... 46 0.11
9dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.11
10dbj|AK100254.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.11
11gb|AC111015.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.42
12gb|AE014828.1| Plasmodium falciparum 3D7 chromosome 14 section 1... 42 1.6
13emb|Z49210.1|SC8339 S.cerevisiae chromosome XIII cosmid 8339 42 1.6
14gb|DQ271217.1| Mustela vison clone III3H3 microsatellite sequence 42 1.6
15ref|XM_686404.1| PREDICTED: Danio rerio similar to mannosyl (alp... 42 1.6
16gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 42 1.6
17gb|DQ331557.1| Synthetic construct Saccharomyces cerevisiae clon... 42 1.6
18gb|M33957.1|YSCVAN1 S.cerevisiae vanadate-resistance protein (VA... 42 1.6
19gb|M20319.1|YSCATR S.cerevisiae ATR1 gene conferring aminotriazo... 42 1.6
20ref|XM_474233.1| Oryza sativa (japonica cultivar-group), predic... 40 6.5
21ref|XM_470144.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.5
22ref|XM_469559.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.5
23gb|AC149756.4| Bos taurus BAC CH240-361I2 (Children's Hospital ... 40 6.5
24ref|XM_362860.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 6.5
25gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 40 6.5
26gb|AC123947.5| Mus musculus BAC clone RP23-103O6 from chromosome... 40 6.5
27gb|AC161381.2| Mus musculus BAC clone RP23-166L22 from chromosom... 40 6.5
28gb|AC183540.2| Pan troglodytes BAC clone CH251-324O24 from chrom... 40 6.5
29gb|AC004111.1| Homo sapiens BAC clone CTB-103H13 from 7, complet... 40 6.5
30gb|AC138116.4| Mus musculus BAC clone RP24-242H5 from chromosome... 40 6.5
31emb|CT025834.1| uncultured sulfate-reducing bacterium, foshr42c9... 40 6.5
32gb|AC116999.2| Mus musculus BAC clone RP23-28L10 from 19, comple... 40 6.5
33emb|AL035706.10|HS836J3 Human DNA sequence from clone RP5-836J3 ... 40 6.5
34emb|BX294156.1| Pirellula sp. strain 1 complete genome; segment ... 40 6.5
35emb|AL606999.3|OSJN00127 Oryza sativa genomic DNA, chromosome 4,... 40 6.5
36emb|CR388362.8| Zebrafish DNA sequence from clone DKEY-176I20 in... 40 6.5
37gb|AC159821.2| Mus musculus BAC clone RP23-152A3 from chromosome... 40 6.5
38gb|AC018898.17| Homo sapiens 3 BAC RP11-178K17 (Roswell Park Can... 40 6.5
39gb|AC134420.8| Mus musculus chromosome 15, clone RP23-478J5, com... 40 6.5
40gb|AC104704.1| Drosophila melanogaster 3L BAC RP98-8H6 (Roswell ... 40 6.5
41gb|AC109810.7| Homo sapiens chromosome 11, clone CTD-2537L20, co... 40 6.5
42dbj|AP007166.1| Aspergillus oryzae RIB40 genomic DNA, SC113 40 6.5
43gb|AC009643.8| Homo sapiens chromosome 11, clone RP11-111A24, co... 40 6.5
44dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
45gb|AC010984.7| Homo sapiens BAC clone RP11-510C1 from 2, complet... 40 6.5
46gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 genomic ... 40 6.5
47gb|AC093774.2| Homo sapiens BAC clone RP11-135O12 from 2, comple... 40 6.5
48gb|AC091532.13| Oryza sativa chromosome 3 BAC OSJNBa0078A17 geno... 40 6.5
49gb|AC127684.5| Mus musculus BAC clone RP24-171J12 from chromosom... 40 6.5
50gb|AC142168.3| Mus musculus BAC clone RP24-80B23 from chromosome... 40 6.5
51gb|AC133785.2| Homo sapiens BAC clone RP13-586I5 from 2, complet... 40 6.5
52dbj|AK071722.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.5
53emb|Z71549.1|SCYNL273W S.cerevisiae chromosome XIV reading frame... 40 6.5
54gb|AE003527.3| Drosophila melanogaster chromosome 3L, section 58... 40 6.5
55gb|AC174769.1| Gasterosteus aculeatus clone VMRC28-49K14, comple... 40 6.5
56gb|DQ196108.1| Chlamydomonas reinhardtii pherophorin-C2 protein ... 40 6.5 
>ref|XM_475171.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 906

 Score =  103 bits (52), Expect = 5e-19
 Identities = 217/272 (79%)
 Strand = Plus / Plus

                                                                       
Query: 148 caaagtacatttactaataaggagggtgcatttggcaaaatggcaaagaaaaagggaggg 207
           |||||||||||| ||| | | || ||||||||||| ||| |  |||| || || | || |
Sbjct: 451 caaagtacattttctactgaagatggtgcatttggtaaattcacaaataagaaagaagag 510

                                                                       
Query: 208 tatgcatacgatgagaccgactttttgggcctcggtttctttgagaaaaaacgttatcaa 267
           ||||  ||||||||||| |||||||||||||| |  || || ||||||||  ||||| | 
Sbjct: 511 tatgagtacgatgagactgactttttgggcctagactttttcgagaaaaagagttataag 570

                                                                       
Query: 268 ggtccaccaccagggctgtctcaaggaattgatcctttttcaaatgaagattttcccgag 327
           || || ||||||||  |  ||| || |  |||||||||| || || |||||||||| || 
Sbjct: 571 gggcctccaccaggtttagctccagcagctgatccttttccagataaagattttcctgaa 630

                                                                       
Query: 328 gtggagatagtaattggtgatcctagtaaatttgggaagtctcgtcgttcaactgaaaat 387
           ||||||||| |||| || || |||||||||||||||||| ||| |||||| || ||   |
Sbjct: 631 gtggagataataataggggaccctagtaaatttgggaagactcatcgttcgacagaggtt 690

                                           
Query: 388 caaccagtagatgatagcgagtctgaggaaac 419
           ||||||| ||||||||| ||| ||||||||||
Sbjct: 691 caaccagcagatgatagtgagcctgaggaaac 722



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 55/58 (94%)
 Strand = Plus / Plus

                                                                     
Query: 49  agcaaggaggccttcgagcgggcgctggagtacaggaacggcaacgggggagggctgg 106
           ||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 346 agcaaggagtccttcgcgcgggcggtggagtacaggaacggcaacgggggagggctgg 403
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>gb|AC136222.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0088M05, complete sequence
          Length = 153368

 Score =  103 bits (52), Expect = 5e-19
 Identities = 217/272 (79%)
 Strand = Plus / Plus

                                                                         
Query: 148   caaagtacatttactaataaggagggtgcatttggcaaaatggcaaagaaaaagggaggg 207
             |||||||||||| ||| | | || ||||||||||| ||| |  |||| || || | || |
Sbjct: 83437 caaagtacattttctactgaagatggtgcatttggtaaattcacaaataagaaagaagag 83496

                                                                         
Query: 208   tatgcatacgatgagaccgactttttgggcctcggtttctttgagaaaaaacgttatcaa 267
             ||||  ||||||||||| |||||||||||||| |  || || ||||||||  ||||| | 
Sbjct: 83497 tatgagtacgatgagactgactttttgggcctagactttttcgagaaaaagagttataag 83556

                                                                         
Query: 268   ggtccaccaccagggctgtctcaaggaattgatcctttttcaaatgaagattttcccgag 327
             || || ||||||||  |  ||| || |  |||||||||| || || |||||||||| || 
Sbjct: 83557 gggcctccaccaggtttagctccagcagctgatccttttccagataaagattttcctgaa 83616

                                                                         
Query: 328   gtggagatagtaattggtgatcctagtaaatttgggaagtctcgtcgttcaactgaaaat 387
             ||||||||| |||| || || |||||||||||||||||| ||| |||||| || ||   |
Sbjct: 83617 gtggagataataataggggaccctagtaaatttgggaagactcatcgttcgacagaggtt 83676

                                             
Query: 388   caaccagtagatgatagcgagtctgaggaaac 419
             ||||||| ||||||||| ||| ||||||||||
Sbjct: 83677 caaccagcagatgatagtgagcctgaggaaac 83708



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 55/58 (94%)
 Strand = Plus / Plus

                                                                       
Query: 49    agcaaggaggccttcgagcgggcgctggagtacaggaacggcaacgggggagggctgg 106
             ||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 82615 agcaaggagtccttcgcgcgggcggtggagtacaggaacggcaacgggggagggctgg 82672
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  103 bits (52), Expect = 5e-19
 Identities = 217/272 (79%)
 Strand = Plus / Plus

                                                                            
Query: 148      caaagtacatttactaataaggagggtgcatttggcaaaatggcaaagaaaaagggaggg 207
                |||||||||||| ||| | | || ||||||||||| ||| |  |||| || || | || |
Sbjct: 18290225 caaagtacattttctactgaagatggtgcatttggtaaattcacaaataagaaagaagag 18290284

                                                                            
Query: 208      tatgcatacgatgagaccgactttttgggcctcggtttctttgagaaaaaacgttatcaa 267
                ||||  ||||||||||| |||||||||||||| |  || || ||||||||  ||||| | 
Sbjct: 18290285 tatgagtacgatgagactgactttttgggcctagactttttcgagaaaaagagttataag 18290344

                                                                            
Query: 268      ggtccaccaccagggctgtctcaaggaattgatcctttttcaaatgaagattttcccgag 327
                || || ||||||||  |  ||| || |  |||||||||| || || |||||||||| || 
Sbjct: 18290345 gggcctccaccaggtttagctccagcagctgatccttttccagataaagattttcctgaa 18290404

                                                                            
Query: 328      gtggagatagtaattggtgatcctagtaaatttgggaagtctcgtcgttcaactgaaaat 387
                ||||||||| |||| || || |||||||||||||||||| ||| |||||| || ||   |
Sbjct: 18290405 gtggagataataataggggaccctagtaaatttgggaagactcatcgttcgacagaggtt 18290464

                                                
Query: 388      caaccagtagatgatagcgagtctgaggaaac 419
                ||||||| ||||||||| ||| ||||||||||
Sbjct: 18290465 caaccagcagatgatagtgagcctgaggaaac 18290496



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 55/58 (94%)
 Strand = Plus / Plus

                                                                          
Query: 49       agcaaggaggccttcgagcgggcgctggagtacaggaacggcaacgggggagggctgg 106
                ||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 18289403 agcaaggagtccttcgcgcgggcggtggagtacaggaacggcaacgggggagggctgg 18289460



 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 297      tgatcctttttcaaatgaagat 318
                ||||||||||||||||||||||
Sbjct: 26122426 tgatcctttttcaaatgaagat 26122447
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>dbj|AK064935.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000O24, full
           insert sequence
          Length = 2427

 Score =  103 bits (52), Expect = 5e-19
 Identities = 217/272 (79%)
 Strand = Plus / Plus

                                                                       
Query: 148 caaagtacatttactaataaggagggtgcatttggcaaaatggcaaagaaaaagggaggg 207
           |||||||||||| ||| | | || ||||||||||| ||| |  |||| || || | || |
Sbjct: 460 caaagtacattttctactgaagatggtgcatttggtaaattcacaaataagaaagaagag 519

                                                                       
Query: 208 tatgcatacgatgagaccgactttttgggcctcggtttctttgagaaaaaacgttatcaa 267
           ||||  ||||||||||| |||||||||||||| |  || || ||||||||  ||||| | 
Sbjct: 520 tatgagtacgatgagactgactttttgggcctagactttttcgagaaaaagagttataag 579

                                                                       
Query: 268 ggtccaccaccagggctgtctcaaggaattgatcctttttcaaatgaagattttcccgag 327
           || || ||||||||  |  ||| || |  |||||||||| || || |||||||||| || 
Sbjct: 580 gggcctccaccaggtttagctccagcagctgatccttttccagataaagattttcctgaa 639

                                                                       
Query: 328 gtggagatagtaattggtgatcctagtaaatttgggaagtctcgtcgttcaactgaaaat 387
           ||||||||| |||| || || |||||||||||||||||| ||| |||||| || ||   |
Sbjct: 640 gtggagataataataggggaccctagtaaatttgggaagactcatcgttcgacagaggtt 699

                                           
Query: 388 caaccagtagatgatagcgagtctgaggaaac 419
           ||||||| ||||||||| ||| ||||||||||
Sbjct: 700 caaccagcagatgatagtgagcctgaggaaac 731



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 55/58 (94%)
 Strand = Plus / Plus

                                                                     
Query: 49  agcaaggaggccttcgagcgggcgctggagtacaggaacggcaacgggggagggctgg 106
           ||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 355 agcaaggagtccttcgcgcgggcggtggagtacaggaacggcaacgggggagggctgg 412
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>ref|XM_469134.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1566

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 4   tcgcctccccctccgccgcagccttcc 30
           |||||| ||||||||||||||||||||
Sbjct: 359 tcgccttcccctccgccgcagccttcc 385
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 4        tcgcctccccctccgccgcagccttcc 30
                |||||| ||||||||||||||||||||
Sbjct: 25674057 tcgccttcccctccgccgcagccttcc 25674083



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 3        gtcgcctccccctccgccgc 22
                ||||||||||||||||||||
Sbjct: 34174106 gtcgcctccccctccgccgc 34174125



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 3        gtcgcctccccctccgccgc 22
                ||||||||||||||||||||
Sbjct: 28703084 gtcgcctccccctccgccgc 28703103
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>gb|AC137991.3| Oryza sativa chromosome 3 BAC OSJNBa0034D21 genomic sequence, complete
              sequence
          Length = 190834

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 4      tcgcctccccctccgccgcagccttcc 30
              |||||| ||||||||||||||||||||
Sbjct: 170839 tcgccttcccctccgccgcagccttcc 170813
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>gb|AC139174.3| Oryza sativa chromosome 3 BAC OSJNBb0065L20 genomic sequence, complete
             sequence
          Length = 167427

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 4     tcgcctccccctccgccgcagccttcc 30
             |||||| ||||||||||||||||||||
Sbjct: 28298 tcgccttcccctccgccgcagccttcc 28272
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 4        tcgcctccccctccgccgcagccttcc 30
                |||||| ||||||||||||||||||||
Sbjct: 25765362 tcgccttcccctccgccgcagccttcc 25765388



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 3        gtcgcctccccctccgccgc 22
                ||||||||||||||||||||
Sbjct: 34264578 gtcgcctccccctccgccgc 34264597



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 3        gtcgcctccccctccgccgc 22
                ||||||||||||||||||||
Sbjct: 28794408 gtcgcctccccctccgccgc 28794427
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>dbj|AK100254.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023061D21, full
           insert sequence
          Length = 1566

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 4   tcgcctccccctccgccgcagccttcc 30
           |||||| ||||||||||||||||||||
Sbjct: 359 tcgccttcccctccgccgcagccttcc 385
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>gb|AC111015.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1131_E09,
             complete sequence
          Length = 94399

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 297   tgatcctttttcaaatgaagat 318
             ||||||||||||||||||||||
Sbjct: 39766 tgatcctttttcaaatgaagat 39787
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>gb|AE014828.1| Plasmodium falciparum 3D7 chromosome 14 section 13 of 13 of the complete
              sequence
          Length = 273275

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 303    tttttcaaatgaagattttcc 323
              |||||||||||||||||||||
Sbjct: 107328 tttttcaaatgaagattttcc 107348
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>emb|Z49210.1|SC8339 S.cerevisiae chromosome XIII cosmid 8339
          Length = 27559

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 175  gcatttggcaaaatggcaaagaaaa 199
            |||||||| ||||||||||||||||
Sbjct: 7582 gcatttggtaaaatggcaaagaaaa 7558
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>gb|DQ271217.1| Mustela vison clone III3H3 microsatellite sequence
          Length = 760

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 178 tttggcaaaatggcaaagaaaaagg 202
           |||| ||||||||||||||||||||
Sbjct: 623 tttgacaaaatggcaaagaaaaagg 647
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>ref|XM_686404.1| PREDICTED: Danio rerio similar to mannosyl
           (alpha-1,3-)-glycoprotein
           beta-1,4-N-acetylglucosaminyltransferase, isoenzyme A
           (LOC563038), mRNA
          Length = 1626

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 179 ttggcaaaatggcaaagaaaa 199
           |||||||||||||||||||||
Sbjct: 78  ttggcaaaatggcaaagaaaa 98
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>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 57      ggccttcgagcgggcgctgga 77
               |||||||||||||||||||||
Sbjct: 2984976 ggccttcgagcgggcgctgga 2984956
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>gb|DQ331557.1| Synthetic construct Saccharomyces cerevisiae clone FLH202122.01X VAN1
            gene, complete sequence
          Length = 1608

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 175  gcatttggcaaaatggcaaagaaaa 199
            |||||||| ||||||||||||||||
Sbjct: 1465 gcatttggtaaaatggcaaagaaaa 1489
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>gb|M33957.1|YSCVAN1 S.cerevisiae vanadate-resistance protein (VAN1) gene, complete cds
          Length = 2371

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 175  gcatttggcaaaatggcaaagaaaa 199
            |||||||| ||||||||||||||||
Sbjct: 1813 gcatttggtaaaatggcaaagaaaa 1837
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>gb|M20319.1|YSCATR S.cerevisiae ATR1 gene conferring aminotriazole resistance, complete
            cds
          Length = 3292

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 175  gcatttggcaaaatggcaaagaaaa 199
            |||||||| ||||||||||||||||
Sbjct: 3037 gcatttggtaaaatggcaaagaaaa 3013
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>ref|XM_474233.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 564

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                  
Query: 1  ccgtcgcctccccctccgccgcag 24
          ||||||||||| ||||||||||||
Sbjct: 46 ccgtcgcctcctcctccgccgcag 23
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>ref|XM_470144.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2216

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 3   gtcgcctccccctccgccgc 22
           ||||||||||||||||||||
Sbjct: 218 gtcgcctccccctccgccgc 199
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>ref|XM_469559.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 990

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 3   gtcgcctccccctccgccgc 22
           ||||||||||||||||||||
Sbjct: 735 gtcgcctccccctccgccgc 716
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>gb|AC149756.4| Bos taurus  BAC CH240-361I2 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 182955

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 183   caaaatggcaaagaaaaagggagg 206
             ||||||||| ||||||||||||||
Sbjct: 59173 caaaatggctaagaaaaagggagg 59196
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>ref|XM_362860.1| Magnaporthe grisea 70-15 hypothetical protein (MG08577.4) partial
           cds
          Length = 1296

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 4   tcgcctccccctccgccgcagcct 27
           |||||||||||||||||| |||||
Sbjct: 313 tcgcctccccctccgccggagcct 336
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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 93      cgggggagggctggacgccg 112
               ||||||||||||||||||||
Sbjct: 3009441 cgggggagggctggacgccg 3009460
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>gb|AC123947.5| Mus musculus BAC clone RP23-103O6 from chromosome 8, complete
            sequence
          Length = 187773

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 293  gaattgatcctttttcaaat 312
            ||||||||||||||||||||
Sbjct: 3739 gaattgatcctttttcaaat 3720
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>gb|AC161381.2| Mus musculus BAC clone RP23-166L22 from chromosome 8, complete sequence
          Length = 233354

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 293   gaattgatcctttttcaaat 312
             ||||||||||||||||||||
Sbjct: 53888 gaattgatcctttttcaaat 53907
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>gb|AC183540.2| Pan troglodytes BAC clone CH251-324O24 from chromosome 7, complete
              sequence
          Length = 176962

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 438    caaacaaaatgaagatggga 457
              ||||||||||||||||||||
Sbjct: 149136 caaacaaaatgaagatggga 149155
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>gb|AC004111.1| Homo sapiens BAC clone CTB-103H13 from 7, complete sequence
          Length = 106172

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 428   caaaaagcagcaaacaaaat 447
             ||||||||||||||||||||
Sbjct: 63559 caaaaagcagcaaacaaaat 63578
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>gb|AC138116.4| Mus musculus BAC clone RP24-242H5 from chromosome 15, complete sequence
          Length = 164014

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 174    tgcatttggcaaaatggcaaagaa 197
              ||||||||||||| ||||||||||
Sbjct: 125665 tgcatttggcaaattggcaaagaa 125642
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>emb|CT025834.1| uncultured sulfate-reducing bacterium, foshr42c9, complete sequence
          Length = 39771

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 8     ctccccctccgccgcagccttccg 31
             |||||||||||| |||||||||||
Sbjct: 35964 ctccccctccgctgcagccttccg 35941
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>gb|AC116999.2| Mus musculus BAC clone RP23-28L10 from 19, complete sequence
          Length = 209671

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 433   agcagcaaacaaaatgaaga 452
             ||||||||||||||||||||
Sbjct: 37075 agcagcaaacaaaatgaaga 37094
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>emb|AL035706.10|HS836J3 Human DNA sequence from clone RP5-836J3 on chromosome 1p22.1-31.1
             Contains a novel gene (FLJ40403), the 3' end of the gene
             for a novel protein containing a tubulin-tyrosine ligase
             family domain (FLJ44842, FLJ23033 and FLJ36855) and a
             novel gene, complete sequence
          Length = 143590

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 438   caaacaaaatgaagatggga 457
             ||||||||||||||||||||
Sbjct: 46327 caaacaaaatgaagatggga 46346
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>emb|BX294156.1| Pirellula sp. strain 1 complete genome; segment 24/24
          Length = 179576

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 228   ctttttgggcctcggtttctttga 251
             |||||||||| |||||||||||||
Sbjct: 90381 ctttttgggcgtcggtttctttga 90404
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>emb|AL606999.3|OSJN00127 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K01,
              complete sequence
          Length = 163448

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 1      ccgtcgcctccccctccgccgcag 24
              ||||||||||| ||||||||||||
Sbjct: 102474 ccgtcgcctcctcctccgccgcag 102451
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>emb|CR388362.8| Zebrafish DNA sequence from clone DKEY-176I20 in linkage group 16,
             complete sequence
          Length = 39233

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 431   aaagcagcaaacaaaatgaa 450
             ||||||||||||||||||||
Sbjct: 14346 aaagcagcaaacaaaatgaa 14327
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>gb|AC159821.2| Mus musculus BAC clone RP23-152A3 from chromosome 9, complete sequence
          Length = 221672

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 426   ttcaaaaagcagcaaacaaa 445
             ||||||||||||||||||||
Sbjct: 89712 ttcaaaaagcagcaaacaaa 89693
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>gb|AC018898.17| Homo sapiens 3 BAC RP11-178K17 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 170606

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 302   ctttttcaaatgaagattttcccg 325
             ||||||||||||||| ||||||||
Sbjct: 60885 ctttttcaaatgaagtttttcccg 60862
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>gb|AC134420.8| Mus musculus chromosome 15, clone RP23-478J5, complete sequence
          Length = 190455

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 174    tgcatttggcaaaatggcaaagaa 197
              ||||||||||||| ||||||||||
Sbjct: 107873 tgcatttggcaaattggcaaagaa 107896
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>gb|AC104704.1| Drosophila melanogaster 3L BAC RP98-8H6 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 169705

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 427   tcaaaaagcagcaaacaaaa 446
             ||||||||||||||||||||
Sbjct: 26922 tcaaaaagcagcaaacaaaa 26941
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>gb|AC109810.7| Homo sapiens chromosome 11, clone CTD-2537L20, complete sequence
          Length = 196235

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 302  ctttttcaaatgaagatttt 321
            ||||||||||||||||||||
Sbjct: 3462 ctttttcaaatgaagatttt 3443
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>dbj|AP007166.1| Aspergillus oryzae RIB40 genomic DNA, SC113
          Length = 1841713

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 324   cgaggtggagatagtaattg 343
             ||||||||||||||||||||
Sbjct: 91183 cgaggtggagatagtaattg 91164
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>gb|AC009643.8| Homo sapiens chromosome 11, clone RP11-111A24, complete sequence
          Length = 183169

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 302   ctttttcaaatgaagatttt 321
             ||||||||||||||||||||
Sbjct: 26599 ctttttcaaatgaagatttt 26618
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 1        ccgtcgcctccccctccgccgcag 24
                ||||||||||| ||||||||||||
Sbjct: 33890575 ccgtcgcctcctcctccgccgcag 33890552
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>gb|AC010984.7| Homo sapiens BAC clone RP11-510C1 from 2, complete sequence
          Length = 191540

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 288    tcaaggaattgatccttttt 307
              ||||||||||||||||||||
Sbjct: 176537 tcaaggaattgatccttttt 176556
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>gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 genomic sequence, complete
              sequence
          Length = 163828

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 3      gtcgcctccccctccgccgc 22
              ||||||||||||||||||||
Sbjct: 137918 gtcgcctccccctccgccgc 137937
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>gb|AC093774.2| Homo sapiens BAC clone RP11-135O12 from 2, complete sequence
          Length = 93499

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 288   tcaaggaattgatccttttt 307
             ||||||||||||||||||||
Sbjct: 18639 tcaaggaattgatccttttt 18658
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>gb|AC091532.13| Oryza sativa chromosome 3 BAC OSJNBa0078A17 genomic sequence, complete
             sequence
          Length = 147344

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     gtcgcctccccctccgccgc 22
             ||||||||||||||||||||
Sbjct: 10065 gtcgcctccccctccgccgc 10084
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>gb|AC127684.5| Mus musculus BAC clone RP24-171J12 from chromosome 6, complete sequence
          Length = 178299

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 429   aaaaagcagcaaacaaaatgaaga 452
             ||||||||||||||| ||||||||
Sbjct: 65810 aaaaagcagcaaacacaatgaaga 65787
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>gb|AC142168.3| Mus musculus BAC clone RP24-80B23 from chromosome 9, complete
            sequence
          Length = 173152

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 426  ttcaaaaagcagcaaacaaa 445
            ||||||||||||||||||||
Sbjct: 6036 ttcaaaaagcagcaaacaaa 6017
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>gb|AC133785.2| Homo sapiens BAC clone RP13-586I5 from 2, complete sequence
          Length = 73720

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 288   tcaaggaattgatccttttt 307
             ||||||||||||||||||||
Sbjct: 34185 tcaaggaattgatccttttt 34204
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>dbj|AK071722.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023109I18, full
           insert sequence
          Length = 2357

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 3   gtcgcctccccctccgccgc 22
           ||||||||||||||||||||
Sbjct: 380 gtcgcctccccctccgccgc 361
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>emb|Z71549.1|SCYNL273W S.cerevisiae chromosome XIV reading frame ORF YNL273w
          Length = 4634

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 249  tgagaaaaaacgttatcaag 268
            ||||||||||||||||||||
Sbjct: 1746 tgagaaaaaacgttatcaag 1765
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>gb|AE003527.3| Drosophila melanogaster chromosome 3L, section 58 of 83 of the complete
              sequence
          Length = 279904

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 427    tcaaaaagcagcaaacaaaa 446
              ||||||||||||||||||||
Sbjct: 144688 tcaaaaagcagcaaacaaaa 144707
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>gb|AC174769.1| Gasterosteus aculeatus clone VMRC28-49K14, complete sequence
          Length = 135249

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 425    gttcaaaaagcagcaaacaa 444
              ||||||||||||||||||||
Sbjct: 108501 gttcaaaaagcagcaaacaa 108520
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>gb|DQ196108.1| Chlamydomonas reinhardtii pherophorin-C2 protein precursor, mRNA,
            complete cds
          Length = 2562

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 1    ccgtcgcctccccctccgcc 20
            ||||||||||||||||||||
Sbjct: 1480 ccgtcgcctccccctccgcc 1499


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,849,515
Number of Sequences: 3902068
Number of extensions: 4849515
Number of successful extensions: 98811
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98412
Number of HSP's gapped (non-prelim): 395
length of query: 480
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 458
effective length of database: 17,147,199,772
effective search space: 7853417495576
effective search space used: 7853417495576
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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