ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd22g05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_472831.1| Oryza sativa (japonica cultivar-group), predic... 88 4e-14
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 88 4e-14
3dbj|AK120756.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 4e-14
4dbj|AK099564.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 4e-14
5emb|AL606441.3|OSJN00012 Oryza sativa genomic DNA, chromosome 4,... 88 4e-14
6dbj|AK100883.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 1e-08
7gb|AY111873.1| Zea mays CL29338_1 mRNA sequence 54 6e-04
8gb|AC109601.9| Oryza sativa chromosome 3 BAC OSJNBa0004G03 genom... 46 0.14
9gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 46 0.14
10dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.14
11ref|XM_419803.1| PREDICTED: Gallus gallus similar to RIKEN cDNA ... 42 2.2
12gb|AC097257.7| Rattus norvegicus X BAC CH230-180I13 (Children's ... 42 2.2
13gb|CP000066.1| Trypanosoma brucei chromosome 3, complete sequence 40 8.6
14gb|AC104642.11| Trypanosoma brucei chromosome 3 clone RPCI93-27C... 40 8.6
15gb|AC079274.4| Mus musculus strain C57BL6/J chromosome 6 clone R... 40 8.6
16gb|AC135359.2| Mus musculus BAC clone RP24-209E17 from chromosom... 40 8.6
17gb|AC133081.4| Mus musculus BAC clone RP24-290O13 from chromosom... 40 8.6
18ref|XM_820542.1| Trypanosoma brucei TREU927 clone RPCI93-27C5 3'... 40 8.6
19gb|AC146509.2| Pan troglodytes BAC clone RP43-93E9 from X, compl... 40 8.6
20gb|AC116322.5| Mus musculus BAC clone RP23-273O16 from chromosom... 40 8.6
21emb|Z85997.1|HSU101D3 Human DNA sequence from clone LL0XNC01-101... 40 8.6
22emb|AL354775.12| Human DNA sequence from clone RP11-223F20 on ch... 40 8.6
23gb|AC154297.3| Mus musculus BAC clone RP23-427N21 from chromosom... 40 8.6
24dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
25gb|AC020699.6| Homo sapiens BAC clone RP11-131K17 from 4, comple... 40 8.6
26gb|AC005235.2| Homo sapiens BAC clone RP11-439M9 from 2, complet... 40 8.6
27ref|XM_218337.3| PREDICTED: Rattus norvegicus capicua homolog (D... 40 8.6
28dbj|AP005823.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
29gb|AC153739.3| Aotus nancymaae clone CH258-485H7, complete sequence 40 8.6 
>ref|XM_472831.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3720

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 134/164 (81%)
 Strand = Plus / Plus

                                                                        
Query: 115  attcctcttccaagtgttcaagctggcaactttgttgggcctccaatgcatggtggtttc 174
            ||||||||  ||||||| |||||||||||||||  ||  ||| |  |||||  ||||| |
Sbjct: 3238 attcctctgtcaagtgtacaagctggcaacttttctgctcctacgttgcataatggttcc 3297

                                                                        
Query: 175  atggtgcaatctaatcatcattctctgcagaaaccatacagaaaccctgctccagtcatg 234
            |||||||||||| || |||||||||  || || |||||||| ||||    ||||||||||
Sbjct: 3298 atggtgcaatctgattatcattctccacaaaagccatacaggaacctccttccagtcatg 3357

                                                        
Query: 235  catcaccctacctacatgatgaaagaggttatcatgattaatga 278
            ||||| ||  |||||||||||||||| || ||||||||| ||||
Sbjct: 3358 catcatccatcctacatgatgaaagaagtaatcatgattgatga 3401



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                         
Query: 532  ggttacataaacccgcatgtttactattcgcaggatttacggtga 576
            ||||||||||||||    || |||||||||||| |||||||||||
Sbjct: 3676 ggttacataaacccatcggtctactattcgcagaatttacggtga 3720
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 134/164 (81%)
 Strand = Plus / Minus

                                                                            
Query: 115      attcctcttccaagtgttcaagctggcaactttgttgggcctccaatgcatggtggtttc 174
                ||||||||  ||||||| |||||||||||||||  ||  ||| |  |||||  ||||| |
Sbjct: 23529979 attcctctgtcaagtgtacaagctggcaacttttctgctcctacgttgcataatggttcc 23529920

                                                                            
Query: 175      atggtgcaatctaatcatcattctctgcagaaaccatacagaaaccctgctccagtcatg 234
                |||||||||||| || |||||||||  || || |||||||| ||||    ||||||||||
Sbjct: 23529919 atggtgcaatctgattatcattctccacaaaagccatacaggaacctccttccagtcatg 23529860

                                                            
Query: 235      catcaccctacctacatgatgaaagaggttatcatgattaatga 278
                ||||| ||  |||||||||||||||| || ||||||||| ||||
Sbjct: 23529859 catcatccatcctacatgatgaaagaagtaatcatgattgatga 23529816



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                             
Query: 532      ggttacataaacccgcatgtttactattcgcaggatttacggtga 576
                ||||||||||||||    || |||||||||||| |||||||||||
Sbjct: 23529541 ggttacataaacccatcggtctactattcgcagaatttacggtga 23529497
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>dbj|AK120756.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007B14, full
            insert sequence
          Length = 4434

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 134/164 (81%)
 Strand = Plus / Plus

                                                                        
Query: 115  attcctcttccaagtgttcaagctggcaactttgttgggcctccaatgcatggtggtttc 174
            ||||||||  ||||||| |||||||||||||||  ||  ||| |  |||||  ||||| |
Sbjct: 3644 attcctctgtcaagtgtacaagctggcaacttttctgctcctacgttgcataatggttcc 3703

                                                                        
Query: 175  atggtgcaatctaatcatcattctctgcagaaaccatacagaaaccctgctccagtcatg 234
            |||||||||||| || |||||||||  || || |||||||| ||||    ||||||||||
Sbjct: 3704 atggtgcaatctgattatcattctccacaaaagccatacaggaacctccttccagtcatg 3763

                                                        
Query: 235  catcaccctacctacatgatgaaagaggttatcatgattaatga 278
            ||||| ||  |||||||||||||||| || ||||||||| ||||
Sbjct: 3764 catcatccatcctacatgatgaaagaagtaatcatgattgatga 3807



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                         
Query: 532  ggttacataaacccgcatgtttactattcgcaggatttacggtga 576
            ||||||||||||||    || |||||||||||| |||||||||||
Sbjct: 4082 ggttacataaacccatcggtctactattcgcagaatttacggtga 4126
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>dbj|AK099564.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013034M05, full
            insert sequence
          Length = 3444

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 134/164 (81%)
 Strand = Plus / Plus

                                                                        
Query: 115  attcctcttccaagtgttcaagctggcaactttgttgggcctccaatgcatggtggtttc 174
            ||||||||  ||||||| |||||||||||||||  ||  ||| |  |||||  ||||| |
Sbjct: 2736 attcctctgtcaagtgtacaagctggcaacttttctgctcctacgttgcataatggttcc 2795

                                                                        
Query: 175  atggtgcaatctaatcatcattctctgcagaaaccatacagaaaccctgctccagtcatg 234
            |||||||||||| || |||||||||  || || |||||||| ||||    ||||||||||
Sbjct: 2796 atggtgcaatctgattatcattctccacaaaagccatacaggaacctccttccagtcatg 2855

                                                        
Query: 235  catcaccctacctacatgatgaaagaggttatcatgattaatga 278
            ||||| ||  |||||||||||||||| || ||||||||| ||||
Sbjct: 2856 catcatccatcctacatgatgaaagaagtaatcatgattgatga 2899



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                         
Query: 532  ggttacataaacccgcatgtttactattcgcaggatttacggtga 576
            ||||||||||||||    || |||||||||||| |||||||||||
Sbjct: 3174 ggttacataaacccatcggtctactattcgcagaatttacggtga 3218
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>emb|AL606441.3|OSJN00012 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0089K21,
             complete sequence
          Length = 139298

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 134/164 (81%)
 Strand = Plus / Minus

                                                                         
Query: 115   attcctcttccaagtgttcaagctggcaactttgttgggcctccaatgcatggtggtttc 174
             ||||||||  ||||||| |||||||||||||||  ||  ||| |  |||||  ||||| |
Sbjct: 85882 attcctctgtcaagtgtacaagctggcaacttttctgctcctacgttgcataatggttcc 85823

                                                                         
Query: 175   atggtgcaatctaatcatcattctctgcagaaaccatacagaaaccctgctccagtcatg 234
             |||||||||||| || |||||||||  || || |||||||| ||||    ||||||||||
Sbjct: 85822 atggtgcaatctgattatcattctccacaaaagccatacaggaacctccttccagtcatg 85763

                                                         
Query: 235   catcaccctacctacatgatgaaagaggttatcatgattaatga 278
             ||||| ||  |||||||||||||||| || ||||||||| ||||
Sbjct: 85762 catcatccatcctacatgatgaaagaagtaatcatgattgatga 85719



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                          
Query: 532   ggttacataaacccgcatgtttactattcgcaggatttacggtga 576
             ||||||||||||||    || |||||||||||| |||||||||||
Sbjct: 85444 ggttacataaacccatcggtctactattcgcagaatttacggtga 85400
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>dbj|AK100883.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023127M15, full
            insert sequence
          Length = 4644

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 127/158 (80%)
 Strand = Plus / Plus

                                                                        
Query: 115  attcctcttccaagtgttcaagctggcaactttgttgggcctccaatgcatggtggtttc 174
            ||||||||  ||||||| |||| |||||||||| |||| ||| |  || ||  ||||| |
Sbjct: 3877 attcctctgtcaagtgtacaagntggcaactttcttggtcctacgttggatactggttcc 3936

                                                                        
Query: 175  atggtgcaatctaatcatcattctctgcagaaaccatacagaaaccctgctccagtcatg 234
            |||||| ||||| || || ||||||  || || |||||||| ||||    ||||||||||
Sbjct: 3937 atggtggaatctgattattattctccacaaaagccatacaggaacctccttccagtcatg 3996

                                                  
Query: 235  catcaccctacctacatgatgaaagaggttatcatgat 272
            ||||| ||  |||||||||||||||| || ||||||||
Sbjct: 3997 catcatccatcctacatgatgaaagaagtaatcatgat 4034



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                         
Query: 532  ggttacataaacccgcatgtttactattcgcaggatttacggtga 576
            ||||||||||||||    || |||||||||||| |||||||||||
Sbjct: 4315 ggttacataaacccatcggtctactattcgcagaatttacggtga 4359
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>gb|AY111873.1| Zea mays CL29338_1 mRNA sequence
          Length = 1018

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 57/67 (85%)
 Strand = Plus / Minus

                                                                       
Query: 379 ccattttactgccatccaccgccgatgcaaattttgccaagggagaattttgctggatcc 438
           ||||||||||||| ||||||||  || | ||| |||||||||||||    ||||||||||
Sbjct: 478 ccattttactgccttccaccgcaaatcccaatcttgccaagggagagggctgctggatcc 419

                  
Query: 439 atgcctg 445
           |||||||
Sbjct: 418 atgcctg 412



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 55/65 (84%)
 Strand = Plus / Minus

                                                                       
Query: 2   cagactacatgctgagagggaattacatgccacctgctagtttcgtgcctccaggctacc 61
           ||||||||||  ||||||||||||||  | |||||| | ||||  |||||||| ||||||
Sbjct: 855 cagactacatcttgagagggaattacgaggcacctgttggttttatgcctccaagctacc 796

                
Query: 62  aacat 66
           |||||
Sbjct: 795 aacat 791



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 106 agtcaccagattcctcttccaagtgttcaagct 138
           ||||| ||||||||||| |||||||||||||||
Sbjct: 748 agtcatcagattcctctaccaagtgttcaagct 716



 Score = 44.1 bits (22), Expect = 0.55
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 231 catgcatcaccctacctacatgatgaaaga 260
           ||||||||| || |||||||||||||||||
Sbjct: 623 catgcatcatccaacctacatgatgaaaga 594
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>gb|AC109601.9| Oryza sativa chromosome 3 BAC OSJNBa0004G03 genomic sequence, complete
             sequence
          Length = 145590

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 501   tctcaccccgtctcgtgtccagcctcc 527
             |||||||||||||| ||||||||||||
Sbjct: 43983 tctcaccccgtctcatgtccagcctcc 43957
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                           
Query: 501      tctcaccccgtctcgtgtccagcctcc 527
                |||||||||||||| ||||||||||||
Sbjct: 22448736 tctcaccccgtctcatgtccagcctcc 22448710
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                           
Query: 501      tctcaccccgtctcgtgtccagcctcc 527
                |||||||||||||| ||||||||||||
Sbjct: 22441765 tctcaccccgtctcatgtccagcctcc 22441739
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>ref|XM_419803.1| PREDICTED: Gallus gallus similar to RIKEN cDNA 5330439J01
            (LOC421775), mRNA
          Length = 4251

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 30   gccacctgctagtttcgtgcctcca 54
            ||||||||||||| |||||||||||
Sbjct: 1251 gccacctgctagtatcgtgcctcca 1275
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>gb|AC097257.7| Rattus norvegicus X BAC CH230-180I13 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 196137

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 135   agctggcaactttgttgggcc 155
             |||||||||||||||||||||
Sbjct: 35960 agctggcaactttgttgggcc 35980
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>gb|CP000066.1| Trypanosoma brucei chromosome 3, complete sequence
          Length = 1653225

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 442    cctgctttccccatggttgg 461
              ||||||||||||||||||||
Sbjct: 788080 cctgctttccccatggttgg 788099
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>gb|AC104642.11| Trypanosoma brucei chromosome 3 clone RPCI93-27C5, complete sequence
          Length = 126762

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 442   cctgctttccccatggttgg 461
             ||||||||||||||||||||
Sbjct: 97028 cctgctttccccatggttgg 97047
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>gb|AC079274.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-142L8, complete
             sequence
          Length = 113724

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 435   atccatgcctgctttcccca 454
             ||||||||||||||||||||
Sbjct: 74179 atccatgcctgctttcccca 74198
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>gb|AC135359.2| Mus musculus BAC clone RP24-209E17 from chromosome 5, complete sequence
          Length = 199822

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 97    tcagtaaggagtcaccagattcctcttc 124
             ||||||| |||||||||||||| |||||
Sbjct: 60267 tcagtaatgagtcaccagattcgtcttc 60240
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>gb|AC133081.4| Mus musculus BAC clone RP24-290O13 from chromosome 3, complete sequence
          Length = 180525

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 600    agagaacttgaaaatgagat 619
              ||||||||||||||||||||
Sbjct: 100610 agagaacttgaaaatgagat 100629
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>ref|XM_820542.1| Trypanosoma brucei TREU927 clone RPCI93-27C5 3', 5'-cyclic nucleotide
            phosphodiesterase (Tb927.3.3070) partial mRNA
          Length = 2730

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 442  cctgctttccccatggttgg 461
            ||||||||||||||||||||
Sbjct: 1875 cctgctttccccatggttgg 1856
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>gb|AC146509.2| Pan troglodytes BAC clone RP43-93E9 from X, complete sequence
          Length = 135272

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 284   ctcctgaatgcagaagtgagccac 307
             ||||||| ||||||||||||||||
Sbjct: 74610 ctcctgactgcagaagtgagccac 74587
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>gb|AC116322.5| Mus musculus BAC clone RP23-273O16 from chromosome 15, complete
             sequence
          Length = 190750

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 373   ctcaggccattttactgcca 392
             ||||||||||||||||||||
Sbjct: 30131 ctcaggccattttactgcca 30150
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>emb|Z85997.1|HSU101D3 Human DNA sequence from clone LL0XNC01-101D3 on chromosome X, complete
             sequence
          Length = 40600

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 284   ctcctgaatgcagaagtgagccac 307
             ||||||| ||||||||||||||||
Sbjct: 20859 ctcctgactgcagaagtgagccac 20882
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>emb|AL354775.12| Human DNA sequence from clone RP11-223F20 on chromosome 13 Contains a
             novel heterogeneous nuclear ribonucleoprotein family A
             protein and a novel gene, complete sequence
          Length = 168897

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 199   ctgcagaaaccatacagaaa 218
             ||||||||||||||||||||
Sbjct: 96561 ctgcagaaaccatacagaaa 96542
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>gb|AC154297.3| Mus musculus BAC clone RP23-427N21 from chromosome 13, complete sequence
          Length = 172087

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 195    ttctctgcagaaaccatacagaaa 218
              ||||||||||||||||| ||||||
Sbjct: 154368 ttctctgcagaaaccattcagaaa 154345
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 62       aacatagtcattctgcattt 81
                ||||||||||||||||||||
Sbjct: 27821493 aacatagtcattctgcattt 27821474
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>gb|AC020699.6| Homo sapiens BAC clone RP11-131K17 from 4, complete sequence
          Length = 186961

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 602   agaacttgaaaatgagattt 621
             ||||||||||||||||||||
Sbjct: 15074 agaacttgaaaatgagattt 15093
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>gb|AC005235.2| Homo sapiens BAC clone RP11-439M9 from 2, complete sequence
          Length = 197911

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 599   aagagaacttgaaaatgaga 618
             ||||||||||||||||||||
Sbjct: 47521 aagagaacttgaaaatgaga 47540
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>ref|XM_218337.3| PREDICTED: Rattus norvegicus capicua homolog (Drosophila) (predicted)
            (Cic_predicted), mRNA
          Length = 5466

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 46   gtgcctccaggctaccaaca 65
            ||||||||||||||||||||
Sbjct: 1871 gtgcctccaggctaccaaca 1852
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>dbj|AP005823.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0663F07
          Length = 159046

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 62     aacatagtcattctgcattt 81
              ||||||||||||||||||||
Sbjct: 106826 aacatagtcattctgcattt 106807
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>gb|AC153739.3| Aotus nancymaae clone CH258-485H7, complete sequence
          Length = 47312

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 604   aacttgaaaatgagatttgt 623
             ||||||||||||||||||||
Sbjct: 36411 aacttgaaaatgagatttgt 36430


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,551,807
Number of Sequences: 3902068
Number of extensions: 5551807
Number of successful extensions: 99294
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 99091
Number of HSP's gapped (non-prelim): 191
length of query: 633
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 610
effective length of database: 17,143,297,704
effective search space: 10457411599440
effective search space used: 10457411599440
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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