>TAR1_YEAST (Q8TGM6) Protein TAR1 (Transcript antisense to ribosomal RNA|
           protein 1)
          Length = 124

 Score = 43.1 bits (100), Expect = 7e-04
 Identities = 24/59 (40%), Positives = 33/59 (55%)
 Frame = -3

Query: 211 ESPAHSSTGTRSEITFPSHCLGAQHGFTFYFTTHWGFFSPFPHGTTSLSVTQEYLALQG 35
           +SP H     R++ T         + FT++FT    FFS F H T SLSV+++YLAL G
Sbjct: 3   DSPTHKEQ--RAQNTMSDQMPFPFNNFTYFFTLFSKFFSSFHHCTCSLSVSRQYLALDG 59

>TAR1_KLULA (Q6CQE5) Protein TAR1|
          Length = 109

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 19/35 (54%), Positives = 25/35 (71%)
 Frame = -3

Query: 139 HGFTFYFTTHWGFFSPFPHGTTSLSVTQEYLALQG 35
           + FT++FT    FFS F H T SLSV+++YLAL G
Sbjct: 10  NNFTYFFTLFSKFFSSFHHCTCSLSVSRQYLALDG 44

>RPOA_PRRS1 (Q9YN02) Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes:|
           Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1-alpha
           papain-like cysteine proteinase (EC 3.4.22.-)
           (PCP1-alpha); Nsp1-beta papain-like cysteine proteinase
           (EC 3.4.22.-) (PCP
          Length = 3966

 Score = 33.1 bits (74), Expect = 0.71
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -1

Query: 255 TAPVGSVPLTKPLPMSRRLILQQARGQRSL--SPPTAWELSTVSRSISLPT 109
           T PV S+P  KP+P  RR +        SL    P +WE   VS  + LPT
Sbjct: 824 TKPVKSLPERKPVPAPRRKVGPDCGSPVSLGGDVPNSWEDLAVSSPLDLPT 874

>RPOA_PRRSR (Q9WJB2) Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes:|
            Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1-alpha
            papain-like cysteine proteinase (EC 3.4.22.-)
            (PCP1-alpha); Nsp1-beta papain-like cysteine proteinase
            (EC 3.4.22.-) (PCP
          Length = 3960

 Score = 33.1 bits (74), Expect = 0.71
 Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
 Frame = -1

Query: 255  TAPVGSVPLTKPLPMSRRLILQQARGQRSL--SPPTAWELSTVSRSISLPTGGSFHLSLT 82
            T PV S+P  KP+P  RR +        SL    P +WE   VS    LPT        +
Sbjct: 824  TKPVKSLPERKPVPAPRRKVGSDCGSPVSLGGDVPNSWEDLAVSSPFDLPTPPEPATPSS 883

Query: 81   VLLRYRSPRSI*PCKVVLADSHGIP 7
             L+   SP+ I      L++   IP
Sbjct: 884  ELVIVSSPQCIFRPATPLSEPAPIP 908

>POF13_SCHPO (O94334) F-box protein pof13|
          Length = 396

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 580 TLTPVIFGSYLVFRVCLDLVPLAQPAPKQCFTPRCPVNCC 461
           TLT       ++F+  LD +P     P +C   RCP+N C
Sbjct: 223 TLTSNWHSRVILFQNALDALPTTHGNPVECDISRCPLNAC 262

>E41LA_HUMAN (Q9HCS5) Band 4.1-like protein 4A (NBL4 protein)|
          Length = 598

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = -3

Query: 340 PSFILVMDRSPRFGSISSDNRPIKTRFRYGSGGFRSLNQATAYESPAHSSTGTRSEITFP 161
           P F     R+P  GS +   +P++ R  + SG    L Q     S  ++S+G+ SE +  
Sbjct: 435 PKFPYTRRRNPSCGSDNDSVQPVRRRKAHNSGEDSDLKQRRRSRSRCNTSSGSESENSNR 494

Query: 160 SH 155
            H
Sbjct: 495 EH 496

>YPAH_PSELE (P52089) UPF0178 protein in pahZ1 5'region|
          Length = 154

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +3

Query: 393 VVVRGEMPLEPRASWFSPKCVEAQQLTGHLGVKHCFGAGCASG 521
           V+ +G +PL PR  W++   + AQQLT    ++   G+G  +G
Sbjct: 82  VLEKGGLPLNPRGEWYTKDTI-AQQLTMRAFMEELRGSGVDTG 123


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,259,361
Number of Sequences: 219361
Number of extensions: 2277031
Number of successful extensions: 5169
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5128
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 5972710590
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)