ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd22d22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1BSP1_CANGA (Q6FQG3) Protein BSP1 31 2.7
2DUS11_HUMAN (O75319) RNA/RNP complex-1-interacting phosphatase (... 31 3.5
3YM67_YEAST (Q03661) Hypothetical 187.1 kDa protein in GUA1-ERG8 ... 30 4.6
4PLB3_CANAL (Q9UVX1) Lysophospholipase 3 precursor (EC 3.1.1.5) (... 30 7.9
5K2C8_XENLA (P08776) Keratin, type II cytoskeletal 8 (Cytokeratin... 30 7.9

>BSP1_CANGA (Q6FQG3) Protein BSP1|
          Length = 525

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
 Frame = -3

Query: 495 EMLDKYEKLNRKYPP-PKFEXXXXXXXXXXXRVYPDNSTEEVTQR-NSNRGEPEDARSMN 322
           E +D   KLN+K PP P+ +            +   NST E  Q+ N    E  D+   +
Sbjct: 399 ESIDMLPKLNKKGPPVPQRKVSMPEALKKLESMKNKNSTTENVQKDNGEESEISDSEPES 458

Query: 321 LDNELEETPKTSLDRNVLGDAASG 250
           ++N+LE   K +     +G    G
Sbjct: 459 INNKLESVLKRANTSGQIGSKHIG 482



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>DUS11_HUMAN (O75319) RNA/RNP complex-1-interacting phosphatase (EC 3.1.3.-)|
           (Phosphatase that interacts with RNA/RNP complex 1)
           (Dual-specificity protein phosphatase 11)
          Length = 330

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = +1

Query: 58  DAARHSKDRRRLYPYHYWEISIP 126
           +A+R ++DRRR YPY+Y  +S P
Sbjct: 301 NASRAAQDRRRWYPYNYSRLSYP 323



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>YM67_YEAST (Q03661) Hypothetical 187.1 kDa protein in GUA1-ERG8 intergenic|
           region
          Length = 1658

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 12/62 (19%)
 Frame = -3

Query: 393 DNSTEEVTQRNSNRGEPEDARSMNLDNELEETPKTSLDR------------NVLGDAASG 250
           D STE VT  N N G+    +S N       T K++ D             NV GD++  
Sbjct: 780 DESTENVTFENENTGDENKNQSKNFPGVANSTDKSTEDNTDEKYFSAINYTNVTGDSSCE 839

Query: 249 DV 244
           D+
Sbjct: 840 DI 841



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>PLB3_CANAL (Q9UVX1) Lysophospholipase 3 precursor (EC 3.1.1.5) (Phospholipase|
           B 3)
          Length = 754

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +2

Query: 449 GGGYFLFNFSYLSNISSFINTSPSILTIEVSGRTPSSSISAKTSNIFSYDP 601
           G G     +S + N+SSF + S     +  +GRTP + I  + S IF   P
Sbjct: 312 GTGGANITWSSIRNLSSFQDHSMPYPIVVANGRTPGTYIINENSTIFEISP 362



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>K2C8_XENLA (P08776) Keratin, type II cytoskeletal 8 (Cytokeratin-8) (CK-8)|
           (Keratin-8) (K8)
          Length = 502

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 6/57 (10%)
 Frame = +2

Query: 440 SNFGGGY---FLFNFSYLSNISSFI---NTSPSILTIEVSGRTPSSSISAKTSNIFS 592
           S FGGGY   +   +SY SN+SS+I    TS   L ++ +  T    + +++S++FS
Sbjct: 445 SGFGGGYGGGYGGGYSYSSNVSSYIGDTKTSKRRLLVK-TVETKDGRVLSESSDVFS 500


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,521,419
Number of Sequences: 219361
Number of extensions: 2069441
Number of successful extensions: 5351
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5351
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 5972710590
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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