ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd21o19 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK104077.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-D06, full insert sequence Length = 600 Score = 127 bits (64), Expect = 2e-26 Identities = 176/216 (81%), Gaps = 9/216 (4%) Strand = Plus / Plus Query: 87 agatgccgcgcattccaatgatcagattccccaagaggcatctcaaagtcccatccccac 146 |||||||||| ||||| |||||| |||||||||||| ||||||| |||||||||||| Sbjct: 71 agatgccgcggattccgctgatcaagttccccaagaggaatctcaagatcccatccccac 130 Query: 147 c------agcggcgcagcctgcagatcagcacgcgaccctcatgtcccgattgggagcta 200 | ||||||||| |||||||||||||||||| ||||| ||||||||||||||| || Sbjct: 131 ccccaccagcggcgcaacctgcagatcagcacgcgtccctcttgtcccgattgggagtta 190 Query: 201 aagtagatgcaccatcttct---ggagagnnnnnnnnttaccgctttagatcagatgtgc 257 || ||| |||||||||||| || ||| ||||||||||||||||||||||| Sbjct: 191 aatcagaggcaccatcttcttccggggagattaaaaattaccgctttagatcagatgtgc 250 Query: 258 cacccgcaccttntcataatgctgttggagggccag 293 | || |||||| | ||| |||||||||||||||| Sbjct: 251 cttccccaccttcttatacggctgttggagggccag 286
>dbj|AK073116.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033020J17, full insert sequence Length = 609 Score = 127 bits (64), Expect = 2e-26 Identities = 176/216 (81%), Gaps = 9/216 (4%) Strand = Plus / Plus Query: 87 agatgccgcgcattccaatgatcagattccccaagaggcatctcaaagtcccatccccac 146 |||||||||| ||||| |||||| |||||||||||| ||||||| |||||||||||| Sbjct: 98 agatgccgcggattccgctgatcaagttccccaagaggaatctcaagatcccatccccac 157 Query: 147 c------agcggcgcagcctgcagatcagcacgcgaccctcatgtcccgattgggagcta 200 | ||||||||| |||||||||||||||||| ||||| ||||||||||||||| || Sbjct: 158 ccccaccagcggcgcaacctgcagatcagcacgcgtccctcttgtcccgattgggagtta 217 Query: 201 aagtagatgcaccatcttct---ggagagnnnnnnnnttaccgctttagatcagatgtgc 257 || ||| |||||||||||| || ||| ||||||||||||||||||||||| Sbjct: 218 aatcagaggcaccatcttcttccggggagattaaaaattaccgctttagatcagatgtgc 277 Query: 258 cacccgcaccttntcataatgctgttggagggccag 293 | || |||||| | ||| |||||||||||||||| Sbjct: 278 cttccccaccttcttatacggctgttggagggccag 313
>gb|AY105657.1| Zea mays PCO062824 mRNA sequence Length = 817 Score = 105 bits (53), Expect = 9e-20 Identities = 143/175 (81%), Gaps = 3/175 (1%) Strand = Plus / Plus Query: 87 agatgccgcgcattccaatgatcagattccccaagaggcatctcaaagtcccatccccac 146 |||||||||| || || |||||| ||||||||| || |||| |||| ||||||| | | Sbjct: 252 agatgccgcggatccctctgatcaagttccccaagcggaatctgaaagccccatccgcgc 311 Query: 147 cag---cggcgcagcctgcagatcagcacgcgaccctcatgtcccgattgggagctaaag 203 ||| || |||| || ||||||||||||||||||||||||||||| ||||| ||||||| Sbjct: 312 cagtgccgtcgcaacccgcagatcagcacgcgaccctcatgtcccggttgggggctaaag 371 Query: 204 tagatgcaccatcttctggagagnnnnnnnnttaccgctttagatcagatgtgcc 258 ||| |||||||||||||||| | |||||||||||| ||||||||||| Sbjct: 372 cagaggcaccatcttctggagggattaaaaattaccgctttagttcagatgtgcc 426
>gb|AY105583.1| Zea mays PCO062823 mRNA sequence Length = 567 Score = 91.7 bits (46), Expect = 1e-15 Identities = 127/158 (80%) Strand = Plus / Plus Query: 161 gcagatcagcacgcgaccctcatgtcccgattgggagctaaagtagatgcaccatcttct 220 ||||| ||||||||||||||||||| ||| || || ||||||| ||| |||||||||||| Sbjct: 232 gcagaccagcacgcgaccctcatgttccggttaggggctaaagcagaggcaccatcttct 291 Query: 221 ggagagnnnnnnnnttaccgctttagatcagatgtgccacccgcaccttntcataatgct 280 |||||| ||||||||||||||| |||||||| | |||||| ||||| ||| Sbjct: 292 ggagagattaaaaattaccgctttagatctgatgtgccttgcccaccttctcatactgcc 351 Query: 281 gttggagggccagnttnacaacttnccaagcgcaaacc 318 || ||||| |||| || || ||| | ||||||||||| Sbjct: 352 gtaggaggtccagcttcactccttcctaagcgcaaacc 389
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 73.8 bits (37), Expect = 3e-10 Identities = 46/49 (93%) Strand = Plus / Plus Query: 147 cagcggcgcagcctgcagatcagcacgcgaccctcatgtcccgattggg 195 |||||||||| |||||||||||||||||| ||||| ||||||||||||| Sbjct: 19383143 cagcggcgcaacctgcagatcagcacgcgtccctcttgtcccgattggg 19383191 Score = 63.9 bits (32), Expect = 3e-07 Identities = 52/59 (88%) Strand = Plus / Plus Query: 235 ttaccgctttagatcagatgtgccacccgcaccttntcataatgctgttggagggccag 293 |||||||||||||||||||||||| || |||||| | ||| |||||||||||||||| Sbjct: 19385168 ttaccgctttagatcagatgtgccttccccaccttcttatacggctgttggagggccag 19385226 Score = 58.0 bits (29), Expect = 2e-05 Identities = 53/61 (86%) Strand = Plus / Plus Query: 87 agatgccgcgcattccaatgatcagattccccaagaggcatctcaaagtcccatccccac 146 |||||||||| ||||| |||||| |||||||||||| ||||||| |||||||||||| Sbjct: 19382941 agatgccgcggattccgctgatcaagttccccaagaggaatctcaagatcccatccccac 19383000 Query: 147 c 147 | Sbjct: 19383001 c 19383001
>dbj|AP005450.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0438E12 Length = 146851 Score = 73.8 bits (37), Expect = 3e-10 Identities = 46/49 (93%) Strand = Plus / Plus Query: 147 cagcggcgcagcctgcagatcagcacgcgaccctcatgtcccgattggg 195 |||||||||| |||||||||||||||||| ||||| ||||||||||||| Sbjct: 87916 cagcggcgcaacctgcagatcagcacgcgtccctcttgtcccgattggg 87964 Score = 63.9 bits (32), Expect = 3e-07 Identities = 52/59 (88%) Strand = Plus / Plus Query: 235 ttaccgctttagatcagatgtgccacccgcaccttntcataatgctgttggagggccag 293 |||||||||||||||||||||||| || |||||| | ||| |||||||||||||||| Sbjct: 89941 ttaccgctttagatcagatgtgccttccccaccttcttatacggctgttggagggccag 89999 Score = 58.0 bits (29), Expect = 2e-05 Identities = 53/61 (86%) Strand = Plus / Plus Query: 87 agatgccgcgcattccaatgatcagattccccaagaggcatctcaaagtcccatccccac 146 |||||||||| ||||| |||||| |||||||||||| ||||||| |||||||||||| Sbjct: 87714 agatgccgcggattccgctgatcaagttccccaagaggaatctcaagatcccatccccac 87773 Query: 147 c 147 | Sbjct: 87774 c 87774
>dbj|AP004749.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0410C01 Length = 138424 Score = 73.8 bits (37), Expect = 3e-10 Identities = 46/49 (93%) Strand = Plus / Plus Query: 147 cagcggcgcagcctgcagatcagcacgcgaccctcatgtcccgattggg 195 |||||||||| |||||||||||||||||| ||||| ||||||||||||| Sbjct: 1552 cagcggcgcaacctgcagatcagcacgcgtccctcttgtcccgattggg 1600 Score = 63.9 bits (32), Expect = 3e-07 Identities = 52/59 (88%) Strand = Plus / Plus Query: 235 ttaccgctttagatcagatgtgccacccgcaccttntcataatgctgttggagggccag 293 |||||||||||||||||||||||| || |||||| | ||| |||||||||||||||| Sbjct: 3577 ttaccgctttagatcagatgtgccttccccaccttcttatacggctgttggagggccag 3635 Score = 58.0 bits (29), Expect = 2e-05 Identities = 53/61 (86%) Strand = Plus / Plus Query: 87 agatgccgcgcattccaatgatcagattccccaagaggcatctcaaagtcccatccccac 146 |||||||||| ||||| |||||| |||||||||||| ||||||| |||||||||||| Sbjct: 1350 agatgccgcggattccgctgatcaagttccccaagaggaatctcaagatcccatccccac 1409 Query: 147 c 147 | Sbjct: 1410 c 1410
>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome Length = 5751492 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 agatgcaccatcttctggag 224 |||||||||||||||||||| Sbjct: 2657360 agatgcaccatcttctggag 2657341 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,871,599 Number of Sequences: 3902068 Number of extensions: 1871599 Number of successful extensions: 27523 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 27491 Number of HSP's gapped (non-prelim): 32 length of query: 322 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 300 effective length of database: 17,147,199,772 effective search space: 5144159931600 effective search space used: 5144159931600 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
