ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd21o06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT016805.1| Zea mays clone Contig638 mRNA sequence Length = 1814 Score = 89.7 bits (45), Expect = 2e-15 Identities = 57/61 (93%) Strand = Plus / Plus Query: 89 aagatgttcggccgcgcccccaagaagagcgacaacaccaagtactacgaggtcctcggg 148 ||||||||||| ||||| || |||||||||||||||||||||||||||||| |||||||| Sbjct: 158 aagatgttcgggcgcgcgccgaagaagagcgacaacaccaagtactacgagatcctcggg 217 Query: 149 g 149 | Sbjct: 218 g 218
>gb|AY109456.1| Zea mays CL1808_1 mRNA sequence Length = 2488 Score = 89.7 bits (45), Expect = 2e-15 Identities = 57/61 (93%) Strand = Plus / Plus Query: 89 aagatgttcggccgcgcccccaagaagagcgacaacaccaagtactacgaggtcctcggg 148 ||||||||||| ||||| || |||||||||||||||||||||||||||||| |||||||| Sbjct: 810 aagatgttcgggcgcgcgccgaagaagagcgacaacaccaagtactacgagatcctcggg 869 Query: 149 g 149 | Sbjct: 870 g 870
>gb|AF053468.1|AF053468 Zea mays DnaJ-related protein ZMDJ1 (mdJ1) gene, complete cds Length = 3748 Score = 89.7 bits (45), Expect = 2e-15 Identities = 57/61 (93%) Strand = Plus / Plus Query: 89 aagatgttcggccgcgcccccaagaagagcgacaacaccaagtactacgaggtcctcggg 148 ||||||||||| ||||| || |||||||||||||||||||||||||||||| |||||||| Sbjct: 810 aagatgttcgggcgcgcgccgaagaagagcgacaacaccaagtactacgagatcctcggg 869 Query: 149 g 149 | Sbjct: 870 g 870
>gb|AC145811.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0088L13 map near C50029S, complete sequence Length = 129900 Score = 81.8 bits (41), Expect = 5e-13 Identities = 56/61 (91%) Strand = Plus / Plus Query: 89 aagatgttcggccgcgcccccaagaagagcgacaacaccaagtactacgaggtcctcggg 148 ||||||||||| ||||| || |||||||||||||||||||||||||||||| |||| ||| Sbjct: 76245 aagatgttcgggcgcgcgccgaagaagagcgacaacaccaagtactacgagatcctgggg 76304 Query: 149 g 149 | Sbjct: 76305 g 76305
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 81.8 bits (41), Expect = 5e-13 Identities = 56/61 (91%) Strand = Plus / Plus Query: 89 aagatgttcggccgcgcccccaagaagagcgacaacaccaagtactacgaggtcctcggg 148 ||||||||||| ||||| || |||||||||||||||||||||||||||||| |||| ||| Sbjct: 24841010 aagatgttcgggcgcgcgccgaagaagagcgacaacaccaagtactacgagatcctgggg 24841069 Query: 149 g 149 | Sbjct: 24841070 g 24841070 Score = 56.0 bits (28), Expect = 3e-05 Identities = 46/52 (88%) Strand = Plus / Plus Query: 90 agatgttcggccgcgcccccaagaagagcgacaacaccaagtactacgaggt 141 |||||||||| ||||| || ||||||||||||||||| |||||||||||| Sbjct: 32404576 agatgttcgggcgcgcgccgaagaagagcgacaacacgcggtactacgaggt 32404627 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 gagagaggcgaccggcggcg 45 |||||||||||||||||||| Sbjct: 18441265 gagagaggcgaccggcggcg 18441246
>emb|AL731878.4|CNS08C8I Oryza sativa chromosome 3, . BAC OSJNBb0116P11 of library OSJNBb from chromosome 3 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 128559 Score = 81.8 bits (41), Expect = 5e-13 Identities = 56/61 (91%) Strand = Plus / Plus Query: 89 aagatgttcggccgcgcccccaagaagagcgacaacaccaagtactacgaggtcctcggg 148 ||||||||||| ||||| || |||||||||||||||||||||||||||||| |||| ||| Sbjct: 127961 aagatgttcgggcgcgcgccgaagaagagcgacaacaccaagtactacgagatcctgggg 128020 Query: 149 g 149 | Sbjct: 128021 g 128021
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 81.8 bits (41), Expect = 5e-13 Identities = 56/61 (91%) Strand = Plus / Plus Query: 89 aagatgttcggccgcgcccccaagaagagcgacaacaccaagtactacgaggtcctcggg 148 ||||||||||| ||||| || |||||||||||||||||||||||||||||| |||| ||| Sbjct: 24932333 aagatgttcgggcgcgcgccgaagaagagcgacaacaccaagtactacgagatcctgggg 24932392 Query: 149 g 149 | Sbjct: 24932393 g 24932393 Score = 56.0 bits (28), Expect = 3e-05 Identities = 46/52 (88%) Strand = Plus / Plus Query: 90 agatgttcggccgcgcccccaagaagagcgacaacaccaagtactacgaggt 141 |||||||||| ||||| || ||||||||||||||||| |||||||||||| Sbjct: 32495086 agatgttcgggcgcgcgccgaagaagagcgacaacacgcggtactacgaggt 32495137 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 gagagaggcgaccggcggcg 45 |||||||||||||||||||| Sbjct: 18435306 gagagaggcgaccggcggcg 18435287
>dbj|AK105028.2| Oryza sativa (japonica cultivar-group) cDNA clone:001-012-E01, full insert sequence Length = 1667 Score = 81.8 bits (41), Expect = 5e-13 Identities = 56/61 (91%) Strand = Plus / Plus Query: 89 aagatgttcggccgcgcccccaagaagagcgacaacaccaagtactacgaggtcctcggg 148 ||||||||||| ||||| || |||||||||||||||||||||||||||||| |||| ||| Sbjct: 125 aagatgttcgggcgcgcgccgaagaagagcgacaacaccaagtactacgagatcctgggg 184 Query: 149 g 149 | Sbjct: 185 g 185
>dbj|AK103763.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033143G16, full insert sequence Length = 913 Score = 81.8 bits (41), Expect = 5e-13 Identities = 56/61 (91%) Strand = Plus / Plus Query: 89 aagatgttcggccgcgcccccaagaagagcgacaacaccaagtactacgaggtcctcggg 148 ||||||||||| ||||| || |||||||||||||||||||||||||||||| |||| ||| Sbjct: 162 aagatgttcgggcgcgcgccgaagaagagcgacaacaccaagtactacgagatcctgggg 221 Query: 149 g 149 | Sbjct: 222 g 222
>dbj|AK102263.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033088M01, full insert sequence Length = 1819 Score = 81.8 bits (41), Expect = 5e-13 Identities = 56/61 (91%) Strand = Plus / Plus Query: 89 aagatgttcggccgcgcccccaagaagagcgacaacaccaagtactacgaggtcctcggg 148 ||||||||||| ||||| || |||||||||||||||||||||||||||||| |||| ||| Sbjct: 160 aagatgttcgggcgcgcgccgaagaagagcgacaacaccaagtactacgagatcctgggg 219 Query: 149 g 149 | Sbjct: 220 g 220
>dbj|AK070556.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023062J10, full insert sequence Length = 2409 Score = 81.8 bits (41), Expect = 5e-13 Identities = 56/61 (91%) Strand = Plus / Plus Query: 89 aagatgttcggccgcgcccccaagaagagcgacaacaccaagtactacgaggtcctcggg 148 ||||||||||| ||||| || |||||||||||||||||||||||||||||| |||| ||| Sbjct: 820 aagatgttcgggcgcgcgccgaagaagagcgacaacaccaagtactacgagatcctgggg 879 Query: 149 g 149 | Sbjct: 880 g 880
>gb|BT024164.1| Zea mays clone EL01N0426F11 mRNA sequence Length = 1761 Score = 81.8 bits (41), Expect = 5e-13 Identities = 56/61 (91%) Strand = Plus / Plus Query: 89 aagatgttcggccgcgcccccaagaagagcgacaacaccaagtactacgaggtcctcggg 148 ||||||||||| ||||| || |||||||||||||||||||||| ||||||| |||||||| Sbjct: 131 aagatgttcgggcgcgcgccgaagaagagcgacaacaccaagtgctacgagatcctcggg 190 Query: 149 g 149 | Sbjct: 191 g 191
>gb|AY109962.1| Zea mays CL1808_2 mRNA sequence Length = 861 Score = 79.8 bits (40), Expect = 2e-12 Identities = 55/60 (91%) Strand = Plus / Plus Query: 90 agatgttcggccgcgcccccaagaagagcgacaacaccaagtactacgaggtcctcgggg 149 |||||||||||||||| || |||||||||||||||||| |||||||||| ||||||||| Sbjct: 49 agatgttcggccgcgcgccgaagaagagcgacaacacccggtactacgagatcctcgggg 108
>gb|AY224432.1| Oryza sativa (japonica cultivar-group) isolate 20618 DNAJ-like protein mRNA, complete cds Length = 1254 Score = 75.8 bits (38), Expect = 3e-11 Identities = 53/58 (91%) Strand = Plus / Plus Query: 92 atgttcggccgcgcccccaagaagagcgacaacaccaagtactacgaggtcctcgggg 149 |||||||| ||||| || |||||||||||||||||||||||||||||| |||| |||| Sbjct: 1 atgttcgggcgcgcgccgaagaagagcgacaacaccaagtactacgagatcctggggg 58
>gb|AY103727.1| Zea mays PCO082317 mRNA sequence Length = 1504 Score = 65.9 bits (33), Expect = 3e-08 Identities = 54/61 (88%) Strand = Plus / Plus Query: 89 aagatgttcggccgcgcccccaagaagagcgacaacaccaagtactacgaggtcctcggg 148 ||||||||||| ||||| || ||||||||||||||||| |||||||||| |||||||| Sbjct: 60 aagatgttcgggcgcgcgccgaagaagagcgacaacacacggtactacgagatcctcggg 119 Query: 149 g 149 | Sbjct: 120 g 120
>gb|AC084296.12| Oryza sativa chromosome 3 BAC OSJNBb0024J04 genomic sequence, complete sequence Length = 145507 Score = 56.0 bits (28), Expect = 3e-05 Identities = 46/52 (88%) Strand = Plus / Plus Query: 90 agatgttcggccgcgcccccaagaagagcgacaacaccaagtactacgaggt 141 |||||||||| ||||| || ||||||||||||||||| |||||||||||| Sbjct: 56704 agatgttcgggcgcgcgccgaagaagagcgacaacacgcggtactacgaggt 56755
>dbj|AK104315.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-E04, full insert sequence Length = 1532 Score = 56.0 bits (28), Expect = 3e-05 Identities = 46/52 (88%) Strand = Plus / Plus Query: 90 agatgttcggccgcgcccccaagaagagcgacaacaccaagtactacgaggt 141 |||||||||| ||||| || ||||||||||||||||| |||||||||||| Sbjct: 88 agatgttcgggcgcgcgccgaagaagagcgacaacacgcggtactacgaggt 139
>dbj|AK061049.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-G01, full insert sequence Length = 1558 Score = 56.0 bits (28), Expect = 3e-05 Identities = 46/52 (88%) Strand = Plus / Plus Query: 90 agatgttcggccgcgcccccaagaagagcgacaacaccaagtactacgaggt 141 |||||||||| ||||| || ||||||||||||||||| |||||||||||| Sbjct: 95 agatgttcgggcgcgcgccgaagaagagcgacaacacgcggtactacgaggt 146
>dbj|AB015601.1| Salix gilgiana SGJ3 mRNA for DnaJ homolog, complete cds Length = 1573 Score = 48.1 bits (24), Expect = 0.007 Identities = 30/32 (93%) Strand = Plus / Plus Query: 110 aagaagagcgacaacaccaagtactacgaggt 141 ||||| |||||||||||||||||||| ||||| Sbjct: 139 aagaaaagcgacaacaccaagtactatgaggt 170
>ref|NM_180322.1| Arabidopsis thaliana ATJ3 AT3G44110 (ATJ3) transcript variant AT3G44110.2 mRNA, complete cds Length = 1579 Score = 44.1 bits (22), Expect = 0.12 Identities = 28/30 (93%) Strand = Plus / Plus Query: 110 aagaagagcgacaacaccaagtactacgag 139 ||||||||||||||||| |||| ||||||| Sbjct: 184 aagaagagcgacaacactaagttctacgag 213
>ref|NM_114279.2| Arabidopsis thaliana ATJ3 AT3G44110 (ATJ3) transcript variant AT3G44110.1 mRNA, complete cds Length = 1746 Score = 44.1 bits (22), Expect = 0.12 Identities = 28/30 (93%) Strand = Plus / Plus Query: 110 aagaagagcgacaacaccaagtactacgag 139 ||||||||||||||||| |||| ||||||| Sbjct: 184 aagaagagcgacaacactaagttctacgag 213
>gb|DQ228340.1| Solanum tuberosum clone 147D03 DnaJ-like protein mRNA, complete cds Length = 1492 Score = 44.1 bits (22), Expect = 0.12 Identities = 25/26 (96%) Strand = Plus / Plus Query: 110 aagaagagcgacaacaccaagtacta 135 ||||||||||||||||| |||||||| Sbjct: 86 aagaagagcgacaacacaaagtacta 111
>gb|DQ228331.1| Solanum tuberosum clone 140B12 DnaJ-like protein mRNA, complete cds Length = 1496 Score = 44.1 bits (22), Expect = 0.12 Identities = 25/26 (96%) Strand = Plus / Plus Query: 110 aagaagagcgacaacaccaagtacta 135 ||||||||||||||||| |||||||| Sbjct: 90 aagaagagcgacaacacaaagtacta 115
>gb|DQ200383.1| Solanum tuberosum clone 063B08 DnaJ-like protein mRNA, complete cds Length = 1515 Score = 44.1 bits (22), Expect = 0.12 Identities = 25/26 (96%) Strand = Plus / Plus Query: 110 aagaagagcgacaacaccaagtacta 135 ||||||||||||||||| |||||||| Sbjct: 114 aagaagagcgacaacacaaagtacta 139
>gb|AY113878.1| Arabidopsis thaliana putative DnaJ-like protein atj3 (At3g44110) mRNA, complete cds Length = 1294 Score = 44.1 bits (22), Expect = 0.12 Identities = 28/30 (93%) Strand = Plus / Plus Query: 110 aagaagagcgacaacaccaagtactacgag 139 ||||||||||||||||| |||| ||||||| Sbjct: 22 aagaagagcgacaacactaagttctacgag 51
>gb|AY035087.1| Arabidopsis thaliana putative dnaJ protein homolog atj3 (At3g44110) mRNA, complete cds Length = 1653 Score = 44.1 bits (22), Expect = 0.12 Identities = 28/30 (93%) Strand = Plus / Plus Query: 110 aagaagagcgacaacaccaagtactacgag 139 ||||||||||||||||| |||| ||||||| Sbjct: 138 aagaagagcgacaacactaagttctacgag 167
>emb|AL353814.1|ATF26G5 Arabidopsis thaliana DNA chromosome 3, BAC clone F26G5 Length = 102873 Score = 44.1 bits (22), Expect = 0.12 Identities = 28/30 (93%) Strand = Plus / Minus Query: 110 aagaagagcgacaacaccaagtactacgag 139 ||||||||||||||||| |||| ||||||| Sbjct: 52339 aagaagagcgacaacactaagttctacgag 52310
>gb|AY045655.1| Arabidopsis thaliana AT3g44110/F26G5_60 mRNA, complete cds Length = 1692 Score = 44.1 bits (22), Expect = 0.12 Identities = 28/30 (93%) Strand = Plus / Plus Query: 110 aagaagagcgacaacaccaagtactacgag 139 ||||||||||||||||| |||| ||||||| Sbjct: 155 aagaagagcgacaacactaagttctacgag 184
>gb|AY088078.1| Arabidopsis thaliana clone 40976 mRNA, complete sequence Length = 1595 Score = 44.1 bits (22), Expect = 0.12 Identities = 28/30 (93%) Strand = Plus / Plus Query: 110 aagaagagcgacaacaccaagtactacgag 139 ||||||||||||||||| |||| ||||||| Sbjct: 164 aagaagagcgacaacactaagttctacgag 193
>gb|AF032883.1|AF032883 Arabidopsis thaliana DnaJ homolog AtJ3 (ATJ3) gene, complete cds Length = 2403 Score = 44.1 bits (22), Expect = 0.12 Identities = 28/30 (93%) Strand = Plus / Plus Query: 110 aagaagagcgacaacaccaagtactacgag 139 ||||||||||||||||| |||| ||||||| Sbjct: 215 aagaagagcgacaacactaagttctacgag 244
>gb|U22340.1|ATU22340 Arabidopsis thaliana DnaJ homolog (atj) mRNA, complete cds Length = 1642 Score = 44.1 bits (22), Expect = 0.12 Identities = 28/30 (93%) Strand = Plus / Plus Query: 110 aagaagagcgacaacaccaagtactacgag 139 ||||||||||||||||| |||| ||||||| Sbjct: 121 aagaagagcgacaacactaagttctacgag 150
>gb|U64914.1|NTU64914 Nicotiana tabacum farnesylated protein NTFP2 mRNA, partial cds Length = 386 Score = 44.1 bits (22), Expect = 0.12 Identities = 25/26 (96%) Strand = Plus / Plus Query: 110 aagaagagcgacaacaccaagtacta 135 ||||||||||||||||| |||||||| Sbjct: 50 aagaagagcgacaacacaaagtacta 75
>gb|DQ252506.1| Solanum tuberosum clone 085D01 DnaJ-like protein-like mRNA, complete cds Length = 1502 Score = 44.1 bits (22), Expect = 0.12 Identities = 25/26 (96%) Strand = Plus / Plus Query: 110 aagaagagcgacaacaccaagtacta 135 ||||||||||||||||| |||||||| Sbjct: 75 aagaagagcgacaacacaaagtacta 100
>gb|M28838.1|ADRITR2 Mastadenovirus s30 (SV30) right inverted terminal repeat Length = 203 Score = 44.1 bits (22), Expect = 0.12 Identities = 22/22 (100%) Strand = Plus / Plus Query: 2 tccgctcccacgcccgccccgc 23 |||||||||||||||||||||| Sbjct: 30 tccgctcccacgcccgccccgc 51
>gb|M28839.1|ADRITR1 Mastadenovirus s30 (SV30) left inverted terminal repeat Length = 203 Score = 44.1 bits (22), Expect = 0.12 Identities = 22/22 (100%) Strand = Plus / Minus Query: 2 tccgctcccacgcccgccccgc 23 |||||||||||||||||||||| Sbjct: 174 tccgctcccacgcccgccccgc 153
>gb|AF550415.2| Citrobacter freundii plasmid pCTX-M3, complete sequence Length = 89468 Score = 42.1 bits (21), Expect = 0.46 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 aagaagagcgacaacaccaag 130 ||||||||||||||||||||| Sbjct: 76022 aagaagagcgacaacaccaag 76042
>emb|X94301.1|STDNAJ S.tuberosum mRNA for DnaJ protein Length = 1421 Score = 42.1 bits (21), Expect = 0.46 Identities = 24/25 (96%) Strand = Plus / Plus Query: 111 agaagagcgacaacaccaagtacta 135 |||||||||||||||| |||||||| Sbjct: 67 agaagagcgacaacacgaagtacta 91
>gb|AC158955.2| Mus musculus chromosome 15, clone RP23-22C17, complete sequence Length = 256999 Score = 42.1 bits (21), Expect = 0.46 Identities = 21/21 (100%) Strand = Plus / Plus Query: 3 ccgctcccacgcccgccccgc 23 ||||||||||||||||||||| Sbjct: 195564 ccgctcccacgcccgccccgc 195584
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 0.46 Identities = 21/21 (100%) Strand = Plus / Minus Query: 3 ccgctcccacgcccgccccgc 23 ||||||||||||||||||||| Sbjct: 15438727 ccgctcccacgcccgccccgc 15438707
>gb|AC120373.10| Mus musculus chromosome 15, clone RP24-512O2, complete sequence Length = 159741 Score = 42.1 bits (21), Expect = 0.46 Identities = 21/21 (100%) Strand = Plus / Minus Query: 3 ccgctcccacgcccgccccgc 23 ||||||||||||||||||||| Sbjct: 123880 ccgctcccacgcccgccccgc 123860
>dbj|AP005568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1299_A11 Length = 160099 Score = 42.1 bits (21), Expect = 0.46 Identities = 21/21 (100%) Strand = Plus / Minus Query: 3 ccgctcccacgcccgccccgc 23 ||||||||||||||||||||| Sbjct: 88019 ccgctcccacgcccgccccgc 87999
>dbj|AK120227.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013042K03, full insert sequence Length = 2422 Score = 42.1 bits (21), Expect = 0.46 Identities = 21/21 (100%) Strand = Plus / Minus Query: 3 ccgctcccacgcccgccccgc 23 ||||||||||||||||||||| Sbjct: 269 ccgctcccacgcccgccccgc 249
>dbj|AK060786.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-D05, full insert sequence Length = 2366 Score = 42.1 bits (21), Expect = 0.46 Identities = 21/21 (100%) Strand = Plus / Minus Query: 3 ccgctcccacgcccgccccgc 23 ||||||||||||||||||||| Sbjct: 269 ccgctcccacgcccgccccgc 249
>gb|AY522431.2| Escherichia coli plasmid pMUR050, complete sequence Length = 56637 Score = 42.1 bits (21), Expect = 0.46 Identities = 21/21 (100%) Strand = Plus / Minus Query: 110 aagaagagcgacaacaccaag 130 ||||||||||||||||||||| Sbjct: 35427 aagaagagcgacaacaccaag 35407
>ref|XM_483376.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2154 Score = 40.1 bits (20), Expect = 1.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 94 gttcggccgcgcccccaagaagagcgac 121 |||||||||| || |||||||||||||| Sbjct: 1740 gttcggccgctcctccaagaagagcgac 1767
>gb|AC135920.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0015G13, complete sequence Length = 143966 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 ggggcctaccccaccgtctc 73 |||||||||||||||||||| Sbjct: 28566 ggggcctaccccaccgtctc 28585
>gb|AC130732.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0708D12, complete sequence Length = 172647 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 ggggcctaccccaccgtctc 73 |||||||||||||||||||| Sbjct: 157182 ggggcctaccccaccgtctc 157201
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 1.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 94 gttcggccgcgcccccaagaagagcgac 121 |||||||||| || |||||||||||||| Sbjct: 25924330 gttcggccgctcctccaagaagagcgac 25924303
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 ggggcctaccccaccgtctc 73 |||||||||||||||||||| Sbjct: 6326827 ggggcctaccccaccgtctc 6326846
>gb|AC097367.3| Oryza sativa chromosome 3 BAC OSJNBa0051C19 genomic sequence, complete sequence Length = 90673 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 gagagaggcgaccggcggcg 45 |||||||||||||||||||| Sbjct: 39950 gagagaggcgaccggcggcg 39969
>dbj|AP005509.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1003_A09 Length = 150755 Score = 40.1 bits (20), Expect = 1.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 94 gttcggccgcgcccccaagaagagcgac 121 |||||||||| || |||||||||||||| Sbjct: 110117 gttcggccgctcctccaagaagagcgac 110090
>dbj|AP003865.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1081_B12 Length = 124741 Score = 40.1 bits (20), Expect = 1.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 94 gttcggccgcgcccccaagaagagcgac 121 |||||||||| || |||||||||||||| Sbjct: 9207 gttcggccgctcctccaagaagagcgac 9180
>dbj|AK121158.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079L12, full insert sequence Length = 2595 Score = 40.1 bits (20), Expect = 1.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 94 gttcggccgcgcccccaagaagagcgac 121 |||||||||| || |||||||||||||| Sbjct: 1901 gttcggccgctcctccaagaagagcgac 1928
>gb|AY541063.1| Nocardia uniformis subsp. tsuyamanensis monocyclic beta-lactam antibiotic nocardicin A biosynthesis gene cluster, partial sequence Length = 33451 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 30 gaggcgaccggcggcgcgc 48 ||||||||||||||||||| Sbjct: 26603 gaggcgaccggcggcgcgc 26621
>ref|XM_462667.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1749 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 73 caccaccccgccggcgaag 91 ||||||||||||||||||| Sbjct: 637 caccaccccgccggcgaag 655
>ref|NM_028718.1| Mus musculus TNF receptor-associated factor 3 interacting protein 1 (Traf3ip1), mRNA Length = 2460 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 40 gcggcgcgcgaggaggggc 58 ||||||||||||||||||| Sbjct: 58 gcggcgcgcgaggaggggc 76
>gb|BC046538.1| Mus musculus TNF receptor-associated factor 3 interacting protein 1, mRNA (cDNA clone IMAGE:5326544), partial cds Length = 886 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 40 gcggcgcgcgaggaggggc 58 ||||||||||||||||||| Sbjct: 58 gcggcgcgcgaggaggggc 76
>emb|X77632.1|APLDJ2 A.porrum LDJ2 mRNA Length = 1509 Score = 38.2 bits (19), Expect = 7.2 Identities = 49/59 (83%) Strand = Plus / Plus Query: 89 aagatgttcggccgcgcccccaagaagagcgacaacaccaagtactacgaggtcctcgg 147 ||||||||||| | ||||| ||||| ||||| || || ||||| || ||||||||||| Sbjct: 78 aagatgttcggtagagccccgaagaaaagcgataatactaagtattatgaggtcctcgg 136
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 12 cgcccgccccgcgggagag 30 ||||||||||||||||||| Sbjct: 1876606 cgcccgccccgcgggagag 1876588
>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB Length = 1683333 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 84 cggcgaagatgttcggccg 102 ||||||||||||||||||| Sbjct: 1037418 cggcgaagatgttcggccg 1037436
>gb|AY344581.2| Bos taurus protein O-fucosyltransferase 1b (pofut1) mRNA, complete cds Length = 1460 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 111 agaagagcgacaacaccaa 129 ||||||||||||||||||| Sbjct: 1307 agaagagcgacaacaccaa 1289
>gb|AE006008.1| Caulobacter crescentus CB15 section 334 of 359 of the complete genome Length = 14619 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 76 caccccgccggcgaagatg 94 ||||||||||||||||||| Sbjct: 12661 caccccgccggcgaagatg 12643
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 38 cggcggcgcgcgaggaggg 56 ||||||||||||||||||| Sbjct: 801760 cggcggcgcgcgaggaggg 801778
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 73 caccaccccgccggcgaag 91 ||||||||||||||||||| Sbjct: 22361406 caccaccccgccggcgaag 22361388
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 24 gggagagaggcgaccggcg 42 ||||||||||||||||||| Sbjct: 29550865 gggagagaggcgaccggcg 29550847
>gb|AY613437.1| Mus musculus microtubule-interacting protein associated with TRAF3 (Mipt3) mRNA, complete cds Length = 2460 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 40 gcggcgcgcgaggaggggc 58 ||||||||||||||||||| Sbjct: 58 gcggcgcgcgaggaggggc 76
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 40 gcggcgcgcgaggaggggc 58 ||||||||||||||||||| Sbjct: 2808754 gcggcgcgcgaggaggggc 2808736
>dbj|AP003634.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0655A07 Length = 172473 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 24 gggagagaggcgaccggcg 42 ||||||||||||||||||| Sbjct: 115371 gggagagaggcgaccggcg 115353
>gb|BT021843.1| Bos taurus protein O-fucosyltransferase 1 (POFUT1), mRNA, complete cds Length = 1425 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 111 agaagagcgacaacaccaa 129 ||||||||||||||||||| Sbjct: 1287 agaagagcgacaacaccaa 1269
>dbj|AK106286.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-101-A10, full insert sequence Length = 1629 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 73 caccaccccgccggcgaag 91 ||||||||||||||||||| Sbjct: 1099 caccaccccgccggcgaag 1081
>dbj|AK073690.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033055I24, full insert sequence Length = 2067 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 73 caccaccccgccggcgaag 91 ||||||||||||||||||| Sbjct: 672 caccaccccgccggcgaag 690
>dbj|AK063185.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-112-B03, full insert sequence Length = 799 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 24 gggagagaggcgaccggcg 42 ||||||||||||||||||| Sbjct: 78 gggagagaggcgaccggcg 96
>gb|AC109199.10| Mus musculus chromosome 1, clone RP23-29D20, complete sequence Length = 194339 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 40 gcggcgcgcgaggaggggc 58 ||||||||||||||||||| Sbjct: 98064 gcggcgcgcgaggaggggc 98082
>gb|AC005920.1|AC005920 Homo sapiens chromosome 17, clone hRPK.700_H_6, complete sequence Length = 175793 Score = 38.2 bits (19), Expect = 7.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 6 ctcccacgcccgccccgcgggag 28 ||||| ||||||||||||||||| Sbjct: 45034 ctcccccgcccgccccgcgggag 45056
>emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064H22, complete sequence Length = 147214 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 73 caccaccccgccggcgaag 91 ||||||||||||||||||| Sbjct: 112310 caccaccccgccggcgaag 112292 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 814,303 Number of Sequences: 3902068 Number of extensions: 814303 Number of successful extensions: 60292 Number of sequences better than 10.0: 75 Number of HSP's better than 10.0 without gapping: 79 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58899 Number of HSP's gapped (non-prelim): 1393 length of query: 149 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 128 effective length of database: 17,151,101,840 effective search space: 2195341035520 effective search space used: 2195341035520 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
