ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd22c14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 137 3e-29
2dbj|AP005395.3| Oryza sativa (japonica cultivar-group) genomic D... 137 3e-29
3dbj|AP003766.3| Oryza sativa (japonica cultivar-group) genomic D... 137 3e-29
4dbj|AK100322.1| Oryza sativa (japonica cultivar-group) cDNA clon... 137 3e-29
5dbj|AB071299.1| Oryza sativa OsARF10 mRNA for auxin response fac... 129 8e-27
6emb|AL390789.13| Human DNA sequence from clone RP11-572N15 on ch... 44 0.38
7gb|AC140034.14| Medicago truncatula clone mth2-17g19, complete s... 42 1.5
8emb|AL160286.16| Human DNA sequence from clone RP11-545A16 on ch... 42 1.5
9gb|AC096531.2| Homo sapiens chromosome 1 clone RP11-472F19, comp... 42 1.5
10gb|AC026113.25| Homo sapiens 12 BAC RP11-756G20 (Roswell Park Ca... 42 1.5
11gb|AC139211.13| Mus musculus chromosome 6, clone RP23-302O24, co... 40 6.0
12gb|AY914945.1| Schistosoma japonicum SJCHGC01316 protein mRNA, p... 40 6.0
13gb|AY815957.1| Schistosoma japonicum SJCHGC01315 protein mRNA, c... 40 6.0
14ref|XM_385834.1| Gibberella zeae PH-1 chromosome 3 hypothetical ... 40 6.0
15gb|AC018688.9| Homo sapiens BAC clone RP11-462H3 from UL, comple... 40 6.0
16emb|AL109942.13|HSJ473J16 Human DNA sequence from clone RP3-473J... 40 6.0
17emb|BX883051.1| Rattus norvegicus chromosome 20, major histocomp... 40 6.0
18gb|AC113581.3| Tetraodon nigroviridis clone GSTNA-45F12, complet... 40 6.0
19gb|AC113580.3| Tetraodon nigroviridis clone GSTNA-28E1, complete... 40 6.0
20gb|AC079766.7| Homo sapiens BAC clone RP11-188P17 from 4, comple... 40 6.0
21gb|AC067890.7| Homo sapiens chromosome 8, clone CTD-2005E13, com... 40 6.0
22dbj|AB168499.1| Macaca fascicularis testis cDNA clone: QtsA-1258... 40 6.0
23gb|AC149534.2| Xenopus tropicalis clone ISB-353H17, complete seq... 40 6.0
24gb|AC024323.4|AC024323 Homo sapiens, clone RP11-28O13, complete ... 40 6.0
25gb|AY613075.1| Ourisia coccinea var. elegans voucher Meudt & Lop... 40 6.0
26gb|AY613070.1| Ourisia alpina voucher Meudt et al. 040, TEX exte... 40 6.0
27gb|AC092843.4| Homo sapiens BAC clone RP11-419O4 from 2, complet... 40 6.0
28dbj|AP005627.1| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 6.0 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  137 bits (69), Expect = 3e-29
 Identities = 183/221 (82%)
 Strand = Plus / Plus

                                                                            
Query: 1        aaactgcagtcgagtctgtcaccgcacgggcttcaccaggtcgatcacggcgggcaacag 60
                ||||||||||||||||| || || ||||| ||||||||| | |||||||||  ||| | |
Sbjct: 28205048 aaactgcagtcgagtctatcgccccacggccttcaccagcttgatcacggcatgcagccg 28205107

                                                                            
Query: 61       aggatcgccgctgggcttatcattggtcaccagtctgcgcaagacgacatctcgtgcatg 120
                |||||||||||||| || || || ||||| | | |||| |  || || ||||| ||| ||
Sbjct: 28205108 aggatcgccgctggtctaattatcggtcatccggctgctcgggatgatatctcatgcttg 28205167

                                                                            
Query: 121      ctgaccattggcaatcaccagaacaacaagaagtcagatgtcaagaaggcttcaccccag 180
                 |||||||||| |  | ||||||||||||||| ||||||| |||||||||  || |||||
Sbjct: 28205168 ttgaccattggtagcccccagaacaacaagaaatcagatggcaagaaggcgccagcccag 28205227

                                                         
Query: 181      ctgatgctctttggaaagcccatactcactgagcagcagat 221
                |||||||| || ||||| ||||||||||| |||||||||||
Sbjct: 28205228 ctgatgcttttcggaaaacccatactcacagagcagcagat 28205268



 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 77/86 (89%)
 Strand = Plus / Plus

                                                                            
Query: 355      ttgtcctgtggaggagttccattgtgccaggacaacaaggtactcgatctcgggctggat 414
                ||||| ||||||||||||||||||||||| |||||||||||||| ||| | |||||||| 
Sbjct: 28205399 ttgtcatgtggaggagttccattgtgccaagacaacaaggtacttgatgttgggctggaa 28205458

                                          
Query: 415      atcgggcactgcaagatattcatgca 440
                |  |||||||||||| ||||||||||
Sbjct: 28205459 acagggcactgcaaggtattcatgca 28205484
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>dbj|AP005395.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0623A10
          Length = 156517

 Score =  137 bits (69), Expect = 3e-29
 Identities = 183/221 (82%)
 Strand = Plus / Plus

                                                                        
Query: 1    aaactgcagtcgagtctgtcaccgcacgggcttcaccaggtcgatcacggcgggcaacag 60
            ||||||||||||||||| || || ||||| ||||||||| | |||||||||  ||| | |
Sbjct: 3077 aaactgcagtcgagtctatcgccccacggccttcaccagcttgatcacggcatgcagccg 3136

                                                                        
Query: 61   aggatcgccgctgggcttatcattggtcaccagtctgcgcaagacgacatctcgtgcatg 120
            |||||||||||||| || || || ||||| | | |||| |  || || ||||| ||| ||
Sbjct: 3137 aggatcgccgctggtctaattatcggtcatccggctgctcgggatgatatctcatgcttg 3196

                                                                        
Query: 121  ctgaccattggcaatcaccagaacaacaagaagtcagatgtcaagaaggcttcaccccag 180
             |||||||||| |  | ||||||||||||||| ||||||| |||||||||  || |||||
Sbjct: 3197 ttgaccattggtagcccccagaacaacaagaaatcagatggcaagaaggcgccagcccag 3256

                                                     
Query: 181  ctgatgctctttggaaagcccatactcactgagcagcagat 221
            |||||||| || ||||| ||||||||||| |||||||||||
Sbjct: 3257 ctgatgcttttcggaaaacccatactcacagagcagcagat 3297



 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 77/86 (89%)
 Strand = Plus / Plus

                                                                        
Query: 355  ttgtcctgtggaggagttccattgtgccaggacaacaaggtactcgatctcgggctggat 414
            ||||| ||||||||||||||||||||||| |||||||||||||| ||| | |||||||| 
Sbjct: 3428 ttgtcatgtggaggagttccattgtgccaagacaacaaggtacttgatgttgggctggaa 3487

                                      
Query: 415  atcgggcactgcaagatattcatgca 440
            |  |||||||||||| ||||||||||
Sbjct: 3488 acagggcactgcaaggtattcatgca 3513
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>dbj|AP003766.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0009H10
          Length = 175754

 Score =  137 bits (69), Expect = 3e-29
 Identities = 183/221 (82%)
 Strand = Plus / Plus

                                                                          
Query: 1      aaactgcagtcgagtctgtcaccgcacgggcttcaccaggtcgatcacggcgggcaacag 60
              ||||||||||||||||| || || ||||| ||||||||| | |||||||||  ||| | |
Sbjct: 135954 aaactgcagtcgagtctatcgccccacggccttcaccagcttgatcacggcatgcagccg 136013

                                                                          
Query: 61     aggatcgccgctgggcttatcattggtcaccagtctgcgcaagacgacatctcgtgcatg 120
              |||||||||||||| || || || ||||| | | |||| |  || || ||||| ||| ||
Sbjct: 136014 aggatcgccgctggtctaattatcggtcatccggctgctcgggatgatatctcatgcttg 136073

                                                                          
Query: 121    ctgaccattggcaatcaccagaacaacaagaagtcagatgtcaagaaggcttcaccccag 180
               |||||||||| |  | ||||||||||||||| ||||||| |||||||||  || |||||
Sbjct: 136074 ttgaccattggtagcccccagaacaacaagaaatcagatggcaagaaggcgccagcccag 136133

                                                       
Query: 181    ctgatgctctttggaaagcccatactcactgagcagcagat 221
              |||||||| || ||||| ||||||||||| |||||||||||
Sbjct: 136134 ctgatgcttttcggaaaacccatactcacagagcagcagat 136174



 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 77/86 (89%)
 Strand = Plus / Plus

                                                                          
Query: 355    ttgtcctgtggaggagttccattgtgccaggacaacaaggtactcgatctcgggctggat 414
              ||||| ||||||||||||||||||||||| |||||||||||||| ||| | |||||||| 
Sbjct: 136305 ttgtcatgtggaggagttccattgtgccaagacaacaaggtacttgatgttgggctggaa 136364

                                        
Query: 415    atcgggcactgcaagatattcatgca 440
              |  |||||||||||| ||||||||||
Sbjct: 136365 acagggcactgcaaggtattcatgca 136390
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>dbj|AK100322.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079H12, full
            insert sequence
          Length = 3026

 Score =  137 bits (69), Expect = 3e-29
 Identities = 183/221 (82%)
 Strand = Plus / Plus

                                                                        
Query: 1    aaactgcagtcgagtctgtcaccgcacgggcttcaccaggtcgatcacggcgggcaacag 60
            ||||||||||||||||| || || ||||| ||||||||| | |||||||||  ||| | |
Sbjct: 2058 aaactgcagtcgagtctatcgccccacggccttcaccagcttgatcacggcatgcagccg 2117

                                                                        
Query: 61   aggatcgccgctgggcttatcattggtcaccagtctgcgcaagacgacatctcgtgcatg 120
            |||||||||||||| || || || ||||| | | |||| |  || || ||||| ||| ||
Sbjct: 2118 aggatcgccgctggtctaattatcggtcatccggctgctcgggatgatatctcatgcttg 2177

                                                                        
Query: 121  ctgaccattggcaatcaccagaacaacaagaagtcagatgtcaagaaggcttcaccccag 180
             |||||||||| |  | ||||||||||||||| ||||||| |||||||||  || |||||
Sbjct: 2178 ttgaccattggtagcccccagaacaacaagaaatcagatggcaagaaggcgccagcccag 2237

                                                     
Query: 181  ctgatgctctttggaaagcccatactcactgagcagcagat 221
            |||||||| || ||||| ||||||||||| |||||||||||
Sbjct: 2238 ctgatgcttttcggaaaacccatactcacagagcagcagat 2278



 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 98/114 (85%)
 Strand = Plus / Plus

                                                                        
Query: 327  aagcaaccagaatggcactatgaaaaacttgtcctgtggaggagttccattgtgccagga 386
            |||||| ||||||||||| |   | || ||||| ||||||||||||||||||||||| ||
Sbjct: 2381 aagcaatcagaatggcaccacagataatttgtcatgtggaggagttccattgtgccaaga 2440

                                                                  
Query: 387  caacaaggtactcgatctcgggctggatatcgggcactgcaagatattcatgca 440
            |||||||||||| ||| | |||||||| |  |||||||||||| ||||||||||
Sbjct: 2441 caacaaggtacttgatgttgggctggaaacagggcactgcaaggtattcatgca 2494
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>dbj|AB071299.1| Oryza sativa OsARF10 mRNA for auxin response factor 10, partial cds
          Length = 2100

 Score =  129 bits (65), Expect = 8e-27
 Identities = 182/221 (82%)
 Strand = Plus / Plus

                                                                        
Query: 1    aaactgcagtcgagtctgtcaccgcacgggcttcaccaggtcgatcacggcgggcaacag 60
            ||||||||||||||||| || || |||||  |||||||| | |||||||||  ||| | |
Sbjct: 1429 aaactgcagtcgagtctatcgccccacggctttcaccagcttgatcacggcatgcagccg 1488

                                                                        
Query: 61   aggatcgccgctgggcttatcattggtcaccagtctgcgcaagacgacatctcgtgcatg 120
            |||||||||||||| || || || ||||| | | |||| |  || || ||||| ||| ||
Sbjct: 1489 aggatcgccgctggtctaattatcggtcatccggctgctcgggatgatatctcatgcttg 1548

                                                                        
Query: 121  ctgaccattggcaatcaccagaacaacaagaagtcagatgtcaagaaggcttcaccccag 180
             |||||||||| |  | ||||||||||||||| ||||||| |||||||||  || |||||
Sbjct: 1549 ttgaccattggtagcccccagaacaacaagaaatcagatggcaagaaggcgccagcccag 1608

                                                     
Query: 181  ctgatgctctttggaaagcccatactcactgagcagcagat 221
            |||||||| || ||||| ||||||||||| |||||||||||
Sbjct: 1609 ctgatgcttttcggaaaacccatactcacagagcagcagat 1649



 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 77/86 (89%)
 Strand = Plus / Plus

                                                                        
Query: 355  ttgtcctgtggaggagttccattgtgccaggacaacaaggtactcgatctcgggctggat 414
            ||||| ||||||||||||||||||||||| |||||||||||||| ||| | |||||||| 
Sbjct: 1780 ttgtcatgtggaggagttccattgtgccaagacaacaaggtacttgatgttgggctggaa 1839

                                      
Query: 415  atcgggcactgcaagatattcatgca 440
            |  |||||||||||| ||||||||||
Sbjct: 1840 acagggcactgcaaggtattcatgca 1865
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>emb|AL390789.13| Human DNA sequence from clone RP11-572N15 on chromosome 6, complete
             sequence
          Length = 147434

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 178   cagctgatgctctttggaaagc 199
             ||||||||||||||||||||||
Sbjct: 52701 cagctgatgctctttggaaagc 52722
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>gb|AC140034.14| Medicago truncatula clone mth2-17g19, complete sequence
          Length = 83825

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 322   ccacaaagcaaccagaatggc 342
             |||||||||||||||||||||
Sbjct: 79184 ccacaaagcaaccagaatggc 79204
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>emb|AL160286.16| Human DNA sequence from clone RP11-545A16 on chromosome 1q25.1-31.1
             Contains the 3' end of a novel gene, a novel gene, the
             NPHS2 gene for idiopathic steroid-resistant nephrosis 2
             protein (podocin), a centaurin gamma 2 (CENTG2) pseudogene
             and the 5' end of a novel gene, complete sequence
          Length = 155416

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 178   cagctgatgctctttggaaag 198
             |||||||||||||||||||||
Sbjct: 48316 cagctgatgctctttggaaag 48296
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>gb|AC096531.2| Homo sapiens chromosome 1 clone RP11-472F19, complete sequence
          Length = 172281

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 178   cagctgatgctctttggaaag 198
             |||||||||||||||||||||
Sbjct: 47430 cagctgatgctctttggaaag 47450
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>gb|AC026113.25| Homo sapiens 12 BAC RP11-756G20 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 94556

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 178   cagctgatgctctttggaaag 198
             |||||||||||||||||||||
Sbjct: 45245 cagctgatgctctttggaaag 45225
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>gb|AC139211.13| Mus musculus chromosome 6, clone RP23-302O24, complete sequence
          Length = 154129

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 161   tcaagaaggcttcaccccag 180
             ||||||||||||||||||||
Sbjct: 70584 tcaagaaggcttcaccccag 70565



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 161   tcaagaaggcttcaccccag 180
             ||||||||||||||||||||
Sbjct: 68917 tcaagaaggcttcaccccag 68898
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>gb|AY914945.1| Schistosoma japonicum SJCHGC01316 protein mRNA, partial cds
          Length = 509

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 310 gatattccaagcccacaaagcaac 333
           ||||| ||||||||||||||||||
Sbjct: 140 gatatcccaagcccacaaagcaac 117
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>gb|AY815957.1| Schistosoma japonicum SJCHGC01315 protein mRNA, complete cds
          Length = 453

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 310 gatattccaagcccacaaagcaac 333
           ||||| ||||||||||||||||||
Sbjct: 122 gatatcccaagcccacaaagcaac 99
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>ref|XM_385834.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG05658.1)
           partial mRNA
          Length = 1509

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 168 ggcttcaccccagctgatgc 187
           ||||||||||||||||||||
Sbjct: 666 ggcttcaccccagctgatgc 647
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>gb|AC018688.9| Homo sapiens BAC clone RP11-462H3 from UL, complete sequence
          Length = 170204

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 76    cttatcattggtcaccagtc 95
             ||||||||||||||||||||
Sbjct: 88492 cttatcattggtcaccagtc 88511
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>emb|AL109942.13|HSJ473J16 Human DNA sequence from clone RP3-473J16 on chromosome 6q25.3-26
             Contains 3' end of the MAP3K4 gene for mitogen-activated
             protein kinase kinase kinase 4 (MTK1, MEKK4, MAPKKK4,
             KIAA0213, homolog of yeast SSK2/SSK22 MAP kinase kinase
             kinase), the gene for lysophosphatidic acid
             acyltransferase-delta (LPAAT-delta) (FLJ23628, contains
             mRNA DKFZp434M038) and the gene for hypothetical protein
             FLJ23112 (DKFZP566E2324), complete sequence
          Length = 176217

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 234   ctctcggggtttctctccatctgc 257
             ||||| ||||||||||||||||||
Sbjct: 59635 ctctctgggtttctctccatctgc 59612
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>emb|BX883051.1| Rattus norvegicus chromosome 20, major histocompatibility complex,
              assembled from 40 BACs, strain Brown Norway (BN/ssNHsd),
              RT1n haplotype; segment 10/11
          Length = 348946

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 142    aacaacaagaagtcagatgt 161
              ||||||||||||||||||||
Sbjct: 347030 aacaacaagaagtcagatgt 347049
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>gb|AC113581.3| Tetraodon nigroviridis clone GSTNA-45F12, complete sequence
          Length = 115385

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 145   aacaagaagtcagatgtcaa 164
             ||||||||||||||||||||
Sbjct: 23034 aacaagaagtcagatgtcaa 23053
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>gb|AC113580.3| Tetraodon nigroviridis clone GSTNA-28E1, complete sequence
          Length = 127223

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 145    aacaagaagtcagatgtcaa 164
              ||||||||||||||||||||
Sbjct: 114456 aacaagaagtcagatgtcaa 114475
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>gb|AC079766.7| Homo sapiens BAC clone RP11-188P17 from 4, complete sequence
          Length = 129874

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 178    cagctgatgctctttggaaagccc 201
              ||||||||||||| ||||||||||
Sbjct: 127386 cagctgatgctctctggaaagccc 127409
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>gb|AC067890.7| Homo sapiens chromosome 8, clone CTD-2005E13, complete sequence
          Length = 120816

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 186   gctctttggaaagcccatac 205
             ||||||||||||||||||||
Sbjct: 54017 gctctttggaaagcccatac 53998
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>dbj|AB168499.1| Macaca fascicularis testis cDNA clone: QtsA-12581, similar to human
           zinc finger protein 285 (ZNF285), mRNA, RefSeq:
           NM_152354.2
          Length = 2828

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 76  cttatcattggtcaccagtc 95
           ||||||||||||||||||||
Sbjct: 140 cttatcattggtcaccagtc 121
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>gb|AC149534.2| Xenopus tropicalis clone ISB-353H17, complete sequence
          Length = 75882

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 313   attccaagcccacaaagcaa 332
             ||||||||||||||||||||
Sbjct: 16222 attccaagcccacaaagcaa 16203
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>gb|AC024323.4|AC024323 Homo sapiens, clone RP11-28O13, complete sequence
          Length = 137242

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 186   gctctttggaaagcccatac 205
             ||||||||||||||||||||
Sbjct: 67519 gctctttggaaagcccatac 67500
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>gb|AY613075.1| Ourisia coccinea var. elegans voucher Meudt & Lopez 007, TEX
           external transcribed spacer and 18S ribosomal RNA gene,
           partial sequence
          Length = 445

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 103 gacgacatctcgtgcatgct 122
           ||||||||||||||||||||
Sbjct: 9   gacgacatctcgtgcatgct 28
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>gb|AY613070.1| Ourisia alpina voucher Meudt et al. 040, TEX external transcribed
           spacer and 18S ribosomal RNA gene, partial sequence
          Length = 446

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 103 gacgacatctcgtgcatgct 122
           ||||||||||||||||||||
Sbjct: 9   gacgacatctcgtgcatgct 28
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>gb|AC092843.4| Homo sapiens BAC clone RP11-419O4 from 2, complete sequence
          Length = 83412

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 158  atgtcaagaaggcttcaccc 177
            ||||||||||||||||||||
Sbjct: 3844 atgtcaagaaggcttcaccc 3863
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>dbj|AP005627.1| Homo sapiens genomic DNA, chromosome 8q23, clone:KB229B8, complete
            sequence
          Length = 95577

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 186  gctctttggaaagcccatac 205
            ||||||||||||||||||||
Sbjct: 8500 gctctttggaaagcccatac 8519


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,547,110
Number of Sequences: 3902068
Number of extensions: 3547110
Number of successful extensions: 60003
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59940
Number of HSP's gapped (non-prelim): 58
length of query: 446
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 424
effective length of database: 17,147,199,772
effective search space: 7270412703328
effective search space used: 7270412703328
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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