| Clone Name | basd21n02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF411229.2| Hordeum vulgare gigantea-like protein mRNA, partial cds Length = 2900 Score = 708 bits (357), Expect = 0.0 Identities = 362/364 (99%) Strand = Plus / Plus Query: 1 aatgcttcagcctcacacatgaaaaacggtttttcaagaccactcttgaaatgctcagaa 60 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 1561 aatgcttcagcctcacacatgaaaaatggtttttcaagaccactcttgaaatgctcagaa 1620 Query: 61 gaggctaggcgaaatggtaatgttgcaagtacatccgggaaagttcctgcaactttacag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1621 gaggctaggcgaaatggtaatgttgcaagtacatccgggaaagttcctgcaactttacag 1680 Query: 121 gctgaagcatctgatttggctaacttccttaccatggatagaaatgggggttatcgaggc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1681 gctgaagcatctgatttggctaacttccttaccatggatagaaatgggggttatcgaggc 1740 Query: 181 tctcagactctcctaagttctgttatctcagaaaaacaggaattatgcttctctgttgtc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1741 tctcagactctcctaagttctgttatctcagaaaaacaggaattatgcttctctgttgtc 1800 Query: 241 tcattgctctggcataagcttattgcatctcctgaaacgcagatgtctgcagaaagtaca 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1801 tcattgctctggcataagcttattgcatctcctgaaacgcagatgtctgcagaaagtaca 1860 Query: 301 tcagctcatcaaggttggagaaaggttgtagatgccctttgngatgttgtttcagcctca 360 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 1861 tcagctcatcaaggttggagaaaggttgtagatgccctttgtgatgttgtttcagcctca 1920 Query: 361 ccag 364 |||| Sbjct: 1921 ccag 1924
>gb|AY740523.1| Hordeum vulgare gigantea-like protein (GI) mRNA, complete cds Length = 3480 Score = 708 bits (357), Expect = 0.0 Identities = 362/364 (99%) Strand = Plus / Plus Query: 1 aatgcttcagcctcacacatgaaaaacggtttttcaagaccactcttgaaatgctcagaa 60 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 2458 aatgcttcagcctcacacatgaaaaatggtttttcaagaccactcttgaaatgctcagaa 2517 Query: 61 gaggctaggcgaaatggtaatgttgcaagtacatccgggaaagttcctgcaactttacag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2518 gaggctaggcgaaatggtaatgttgcaagtacatccgggaaagttcctgcaactttacag 2577 Query: 121 gctgaagcatctgatttggctaacttccttaccatggatagaaatgggggttatcgaggc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2578 gctgaagcatctgatttggctaacttccttaccatggatagaaatgggggttatcgaggc 2637 Query: 181 tctcagactctcctaagttctgttatctcagaaaaacaggaattatgcttctctgttgtc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2638 tctcagactctcctaagttctgttatctcagaaaaacaggaattatgcttctctgttgtc 2697 Query: 241 tcattgctctggcataagcttattgcatctcctgaaacgcagatgtctgcagaaagtaca 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2698 tcattgctctggcataagcttattgcatctcctgaaacgcagatgtctgcagaaagtaca 2757 Query: 301 tcagctcatcaaggttggagaaaggttgtagatgccctttgngatgttgtttcagcctca 360 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 2758 tcagctcatcaaggttggagaaaggttgtagatgccctttgtgatgttgtttcagcctca 2817 Query: 361 ccag 364 |||| Sbjct: 2818 ccag 2821
>gb|AY740524.1| Hordeum vulgare subsp. vulgare gigantea-like protein (GI) gene, complete cds Length = 7682 Score = 638 bits (322), Expect = e-180 Identities = 325/326 (99%) Strand = Plus / Plus Query: 1 aatgcttcagcctcacacatgaaaaacggtttttcaagaccactcttgaaatgctcagaa 60 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 5932 aatgcttcagcctcacacatgaaaaatggtttttcaagaccactcttgaaatgctcagaa 5991 Query: 61 gaggctaggcgaaatggtaatgttgcaagtacatccgggaaagttcctgcaactttacag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5992 gaggctaggcgaaatggtaatgttgcaagtacatccgggaaagttcctgcaactttacag 6051 Query: 121 gctgaagcatctgatttggctaacttccttaccatggatagaaatgggggttatcgaggc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6052 gctgaagcatctgatttggctaacttccttaccatggatagaaatgggggttatcgaggc 6111 Query: 181 tctcagactctcctaagttctgttatctcagaaaaacaggaattatgcttctctgttgtc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6112 tctcagactctcctaagttctgttatctcagaaaaacaggaattatgcttctctgttgtc 6171 Query: 241 tcattgctctggcataagcttattgcatctcctgaaacgcagatgtctgcagaaagtaca 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6172 tcattgctctggcataagcttattgcatctcctgaaacgcagatgtctgcagaaagtaca 6231 Query: 301 tcagctcatcaaggttggagaaaggt 326 |||||||||||||||||||||||||| Sbjct: 6232 tcagctcatcaaggttggagaaaggt 6257 Score = 77.8 bits (39), Expect = 2e-11 Identities = 41/42 (97%) Strand = Plus / Plus Query: 323 aggttgtagatgccctttgngatgttgtttcagcctcaccag 364 ||||||||||||||||||| |||||||||||||||||||||| Sbjct: 6353 aggttgtagatgccctttgtgatgttgtttcagcctcaccag 6394
>gb|AY679115.1| Triticum aestivum gigantea 3 (TaGI3) mRNA, complete cds Length = 3548 Score = 636 bits (321), Expect = e-179 Identities = 353/364 (96%) Strand = Plus / Plus Query: 1 aatgcttcagcctcacacatgaaaaacggtttttcaagaccactcttgaaatgctcagaa 60 |||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct: 2497 aatggttcagcctcacacatgaaaaatggtttgtcaagaccactcttgaaatgctcagaa 2556 Query: 61 gaggctaggcgaaatggtaatgttgcaagtacatccgggaaagttcctgcaactttacag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2557 gaggctaggcgaaatggtaatgttgcaagtacatccgggaaagttcctgcaactttacag 2616 Query: 121 gctgaagcatctgatttggctaacttccttaccatggatagaaatgggggttatcgaggc 180 |||||||| ||||||||||| |||||||||||||||||||| ||||| |||||||||||| Sbjct: 2617 gctgaagcttctgatttggcgaacttccttaccatggataggaatggcggttatcgaggc 2676 Query: 181 tctcagactctcctaagttctgttatctcagaaaaacaggaattatgcttctctgttgtc 240 ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| Sbjct: 2677 tctcagactctcctaagatctgttatctcagaaaaacaggaactatgcttctctgttgtc 2736 Query: 241 tcattgctctggcataagcttattgcatctcctgaaacgcagatgtctgcagaaagtaca 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2737 tcattgctctggcataagcttattgcatctcctgaaacgcagatgtctgcagaaagtaca 2796 Query: 301 tcagctcatcaaggttggagaaaggttgtagatgccctttgngatgttgtttcagcctca 360 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct: 2797 tcagctcatcaaggttggagaaaggttgtagatgctctttgtgatgttgtttcagcctca 2856 Query: 361 ccag 364 |||| Sbjct: 2857 ccag 2860
>gb|AF543844.1| Triticum aestivum gigantea (TaGI1) mRNA, complete cds Length = 4012 Score = 628 bits (317), Expect = e-177 Identities = 352/364 (96%) Strand = Plus / Plus Query: 1 aatgcttcagcctcacacatgaaaaacggtttttcaagaccactcttgaaatgctcagaa 60 |||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct: 2655 aatggttcagcctcacacatgaaaaatggtttgtcaagaccactcttgaaatgctcagaa 2714 Query: 61 gaggctaggcgaaatggtaatgttgcaagtacatccgggaaagttcctgcaactttacag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2715 gaggctaggcgaaatggtaatgttgcaagtacatccgggaaagttcctgcaactttacag 2774 Query: 121 gctgaagcatctgatttggctaacttccttaccatggatagaaatgggggttatcgaggc 180 |||||||| ||||||||||| |||||||||||||||||||| ||||| |||||||||||| Sbjct: 2775 gctgaagcttctgatttggcgaacttccttaccatggataggaatggcggttatcgaggc 2834 Query: 181 tctcagactctcctaagttctgttatctcagaaaaacaggaattatgcttctctgttgtc 240 ||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||| Sbjct: 2835 tctcagactctcctaagatctgttatctcagaaaaacaggaactaagcttctctgttgtc 2894 Query: 241 tcattgctctggcataagcttattgcatctcctgaaacgcagatgtctgcagaaagtaca 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2895 tcattgctctggcataagcttattgcatctcctgaaacgcagatgtctgcagaaagtaca 2954 Query: 301 tcagctcatcaaggttggagaaaggttgtagatgccctttgngatgttgtttcagcctca 360 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct: 2955 tcagctcatcaaggttggagaaaggttgtagatgctctttgtgatgttgtttcagcctca 3014 Query: 361 ccag 364 |||| Sbjct: 3015 ccag 3018
>gb|AY679114.1| Triticum aestivum gigantea 2 (TaGI2) mRNA, complete cds Length = 3543 Score = 620 bits (313), Expect = e-175 Identities = 351/364 (96%) Strand = Plus / Plus Query: 1 aatgcttcagcctcacacatgaaaaacggtttttcaagaccactcttgaaatgctcagaa 60 |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| Sbjct: 2491 aatgcttcagcctcacacatgaaaaatggtttttcaagatcactcttgaaatgctcagaa 2550 Query: 61 gaggctaggcgaaatggtaatgttgcaagtacatccgggaaagttcctgcaactttacag 120 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 2551 gaggctaggcgaaatggtaacgttgcaagtacatccgggaaagttcctgcaactttacag 2610 Query: 121 gctgaagcatctgatttggctaacttccttaccatggatagaaatgggggttatcgaggc 180 |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct: 2611 gctgaagcatctgatttggcgaacttccttaccatggataggaatgggggttatcgaggc 2670 Query: 181 tctcagactctcctaagttctgttatctcagaaaaacaggaattatgcttctctgttgtc 240 ||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||| Sbjct: 2671 tctcagactctcctacgatctgttatctcagaaaaacaggaactatgcttctctgttgtc 2730 Query: 241 tcattgctctggcataagcttattgcatctcctgaaacgcagatgtctgcagaaagtaca 300 || |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 2731 tcgttgctccggcataagcttattgcatctcccgaaacgcagatgtctgcagaaagtaca 2790 Query: 301 tcagctcatcaaggttggagaaaggttgtagatgccctttgngatgttgtttcagcctca 360 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct: 2791 tcagctcatcaaggttggagaaaggttgtagatgcactttgtgatgttgtttcagcctca 2850 Query: 361 ccag 364 |||| Sbjct: 2851 ccag 2854
>ref|XM_550413.1| Oryza sativa (japonica cultivar-group), mRNA Length = 4184 Score = 315 bits (159), Expect = 5e-83 Identities = 302/350 (86%) Strand = Plus / Plus Query: 13 tcacacatgaaaaacggtttttcaagaccactcttgaaatgctcagaagaggctaggcga 72 ||||||| |||||| |||||| ||||||||||||||||||| ||||||| | || | | Sbjct: 2922 tcacacaggaaaaatggttttgcaagaccactcttgaaatgtgcagaagatgttatacta 2981 Query: 73 aatggtaatgttgcaagtacatccgggaaagttcctgcaactttacaggctgaagcatct 132 |||||| |||| |||||||| || ||||||| ||||| |||||||| ||||| ||| Sbjct: 2982 aatggtgatgtcgcaagtacttctgggaaagccattgcaagtttacaggtggaagcttct 3041 Query: 133 gatttggctaacttccttaccatggatagaaatgggggttatcgaggctctcagactctc 192 |||||||| |||||||| |||||||| ||||||||||||| |||| ||||| |||||| Sbjct: 3042 gatttggcaaacttcctcaccatggaccgaaatgggggttacagaggttctcaaactctc 3101 Query: 193 ctaagttctgttatctcagaaaaacaggaattatgcttctctgttgtctcattgctctgg 252 ||||| ||||| | ||||| || ||||| ||||||||||||||||||||||||||||| Sbjct: 3102 ctaagatctgtactgtcagagaagcaggagctatgcttctctgttgtctcattgctctgg 3161 Query: 253 cataagcttattgcatctcctgaaacgcagatgtctgcagaaagtacatcagctcatcaa 312 || ||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||| Sbjct: 3162 cagaagctcattgcatctcccgaaatgcagatgtctgcagaaagtacatcagctcatcag 3221 Query: 313 ggttggagaaaggttgtagatgccctttgngatgttgtttcagcctcacc 362 ||||||||||||||||| ||||| ||||| || |||||||||||||||| Sbjct: 3222 ggttggagaaaggttgtggatgcgctttgtgacattgtttcagcctcacc 3271
>emb|AJ133787.1|OSA133787 Oryza sativa mRNA for gigantea homologue, partial Length = 2931 Score = 315 bits (159), Expect = 5e-83 Identities = 302/350 (86%) Strand = Plus / Plus Query: 13 tcacacatgaaaaacggtttttcaagaccactcttgaaatgctcagaagaggctaggcga 72 ||||||| |||||| |||||| ||||||||||||||||||| ||||||| | || | | Sbjct: 1933 tcacacaggaaaaatggttttgcaagaccactcttgaaatgtgcagaagatgttatacta 1992 Query: 73 aatggtaatgttgcaagtacatccgggaaagttcctgcaactttacaggctgaagcatct 132 |||||| |||| |||||||| || ||||||| ||||| |||||||| ||||| ||| Sbjct: 1993 aatggtgatgtcgcaagtacttctgggaaagccattgcaagtttacaggtggaagcttct 2052 Query: 133 gatttggctaacttccttaccatggatagaaatgggggttatcgaggctctcagactctc 192 |||||||| |||||||| |||||||| ||||||||||||| |||| ||||| |||||| Sbjct: 2053 gatttggcaaacttcctcaccatggaccgaaatgggggttacagaggttctcaaactctc 2112 Query: 193 ctaagttctgttatctcagaaaaacaggaattatgcttctctgttgtctcattgctctgg 252 ||||| ||||| | ||||| || ||||| ||||||||||||||||||||||||||||| Sbjct: 2113 ctaagatctgtactgtcagagaagcaggagctatgcttctctgttgtctcattgctctgg 2172 Query: 253 cataagcttattgcatctcctgaaacgcagatgtctgcagaaagtacatcagctcatcaa 312 || ||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||| Sbjct: 2173 cagaagctcattgcatctcccgaaatgcagatgtctgcagaaagtacatcagctcatcag 2232 Query: 313 ggttggagaaaggttgtagatgccctttgngatgttgtttcagcctcacc 362 ||||||||||||||||| ||||| ||||| || |||||||||||||||| Sbjct: 2233 ggttggagaaaggttgtggatgcgctttgtgacattgtttcagcctcacc 2282
>dbj|AK100147.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014E02, full insert sequence Length = 3682 Score = 315 bits (159), Expect = 5e-83 Identities = 302/350 (86%) Strand = Plus / Plus Query: 13 tcacacatgaaaaacggtttttcaagaccactcttgaaatgctcagaagaggctaggcga 72 ||||||| |||||| |||||| ||||||||||||||||||| ||||||| | || | | Sbjct: 2903 tcacacaggaaaaatggttttgcaagaccactcttgaaatgtgcagaagatgttatacta 2962 Query: 73 aatggtaatgttgcaagtacatccgggaaagttcctgcaactttacaggctgaagcatct 132 |||||| |||| |||||||| || ||||||| ||||| |||||||| ||||| ||| Sbjct: 2963 aatggtgatgtcgcaagtacttctgggaaagccattgcaagtttacaggtggaagcttct 3022 Query: 133 gatttggctaacttccttaccatggatagaaatgggggttatcgaggctctcagactctc 192 |||||||| |||||||| |||||||| ||||||||||||| |||| ||||| |||||| Sbjct: 3023 gatttggcaaacttcctcaccatggaccgaaatgggggttacagaggttctcaaactctc 3082 Query: 193 ctaagttctgttatctcagaaaaacaggaattatgcttctctgttgtctcattgctctgg 252 ||||| ||||| | ||||| || ||||| ||||||||||||||||||||||||||||| Sbjct: 3083 ctaagatctgtactgtcagagaagcaggagctatgcttctctgttgtctcattgctctgg 3142 Query: 253 cataagcttattgcatctcctgaaacgcagatgtctgcagaaagtacatcagctcatcaa 312 || ||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||| Sbjct: 3143 cagaagctcattgcatctcccgaaatgcagatgtctgcagaaagtacatcagctcatcag 3202 Query: 313 ggttggagaaaggttgtagatgccctttgngatgttgtttcagcctcacc 362 ||||||||||||||||| ||||| ||||| || |||||||||||||||| Sbjct: 3203 ggttggagaaaggttgtggatgcgctttgtgacattgtttcagcctcacc 3252
>dbj|AK072166.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134K20, full insert sequence Length = 4252 Score = 315 bits (159), Expect = 5e-83 Identities = 302/350 (86%) Strand = Plus / Plus Query: 13 tcacacatgaaaaacggtttttcaagaccactcttgaaatgctcagaagaggctaggcga 72 ||||||| |||||| |||||| ||||||||||||||||||| ||||||| | || | | Sbjct: 2891 tcacacaggaaaaatggttttgcaagaccactcttgaaatgtgcagaagatgttatacta 2950 Query: 73 aatggtaatgttgcaagtacatccgggaaagttcctgcaactttacaggctgaagcatct 132 |||||| |||| |||||||| || ||||||| ||||| |||||||| ||||| ||| Sbjct: 2951 aatggtgatgtcgcaagtacttctgggaaagccattgcaagtttacaggtggaagcttct 3010 Query: 133 gatttggctaacttccttaccatggatagaaatgggggttatcgaggctctcagactctc 192 |||||||| |||||||| |||||||| ||||||||||||| |||| ||||| |||||| Sbjct: 3011 gatttggcaaacttcctcaccatggaccgaaatgggggttacagaggttctcaaactctc 3070 Query: 193 ctaagttctgttatctcagaaaaacaggaattatgcttctctgttgtctcattgctctgg 252 ||||| ||||| | ||||| || ||||| ||||||||||||||||||||||||||||| Sbjct: 3071 ctaagatctgtactgtcagagaagcaggagctatgcttctctgttgtctcattgctctgg 3130 Query: 253 cataagcttattgcatctcctgaaacgcagatgtctgcagaaagtacatcagctcatcaa 312 || ||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||| Sbjct: 3131 cagaagctcattgcatctcccgaaatgcagatgtctgcagaaagtacatcagctcatcag 3190 Query: 313 ggttggagaaaggttgtagatgccctttgngatgttgtttcagcctcacc 362 ||||||||||||||||| ||||| ||||| || |||||||||||||||| Sbjct: 3191 ggttggagaaaggttgtggatgcgctttgtgacattgtttcagcctcacc 3240
>dbj|AK067038.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091I22, full insert sequence Length = 4185 Score = 315 bits (159), Expect = 5e-83 Identities = 302/350 (86%) Strand = Plus / Plus Query: 13 tcacacatgaaaaacggtttttcaagaccactcttgaaatgctcagaagaggctaggcga 72 ||||||| |||||| |||||| ||||||||||||||||||| ||||||| | || | | Sbjct: 2922 tcacacaggaaaaatggttttgcaagaccactcttgaaatgtgcagaagatgttatacta 2981 Query: 73 aatggtaatgttgcaagtacatccgggaaagttcctgcaactttacaggctgaagcatct 132 |||||| |||| |||||||| || ||||||| ||||| |||||||| ||||| ||| Sbjct: 2982 aatggtgatgtcgcaagtacttctgggaaagccattgcaagtttacaggtggaagcttct 3041 Query: 133 gatttggctaacttccttaccatggatagaaatgggggttatcgaggctctcagactctc 192 |||||||| |||||||| |||||||| ||||||||||||| |||| ||||| |||||| Sbjct: 3042 gatttggcaaacttcctcaccatggaccgaaatgggggttacagaggttctcaaactctc 3101 Query: 193 ctaagttctgttatctcagaaaaacaggaattatgcttctctgttgtctcattgctctgg 252 ||||| ||||| | ||||| || ||||| ||||||||||||||||||||||||||||| Sbjct: 3102 ctaagatctgtactgtcagagaagcaggagctatgcttctctgttgtctcattgctctgg 3161 Query: 253 cataagcttattgcatctcctgaaacgcagatgtctgcagaaagtacatcagctcatcaa 312 || ||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||| Sbjct: 3162 cagaagctcattgcatctcccgaaatgcagatgtctgcagaaagtacatcagctcatcag 3221 Query: 313 ggttggagaaaggttgtagatgccctttgngatgttgtttcagcctcacc 362 ||||||||||||||||| ||||| ||||| || |||||||||||||||| Sbjct: 3222 ggttggagaaaggttgtggatgcgctttgtgacattgtttcagcctcacc 3271
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 281 bits (142), Expect = 8e-73 Identities = 271/314 (86%) Strand = Plus / Minus Query: 13 tcacacatgaaaaacggtttttcaagaccactcttgaaatgctcagaagaggctaggcga 72 ||||||| |||||| |||||| ||||||||||||||||||| ||||||| | || | | Sbjct: 4330236 tcacacaggaaaaatggttttgcaagaccactcttgaaatgtgcagaagatgttatacta 4330177 Query: 73 aatggtaatgttgcaagtacatccgggaaagttcctgcaactttacaggctgaagcatct 132 |||||| |||| |||||||| || ||||||| ||||| |||||||| ||||| ||| Sbjct: 4330176 aatggtgatgtcgcaagtacttctgggaaagccattgcaagtttacaggtggaagcttct 4330117 Query: 133 gatttggctaacttccttaccatggatagaaatgggggttatcgaggctctcagactctc 192 |||||||| |||||||| |||||||| ||||||||||||| |||| ||||| |||||| Sbjct: 4330116 gatttggcaaacttcctcaccatggaccgaaatgggggttacagaggttctcaaactctc 4330057 Query: 193 ctaagttctgttatctcagaaaaacaggaattatgcttctctgttgtctcattgctctgg 252 ||||| ||||| | ||||| || ||||| ||||||||||||||||||||||||||||| Sbjct: 4330056 ctaagatctgtactgtcagagaagcaggagctatgcttctctgttgtctcattgctctgg 4329997 Query: 253 cataagcttattgcatctcctgaaacgcagatgtctgcagaaagtacatcagctcatcaa 312 || ||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||| Sbjct: 4329996 cagaagctcattgcatctcccgaaatgcagatgtctgcagaaagtacatcagctcatcag 4329937 Query: 313 ggttggagaaaggt 326 |||||||||||||| Sbjct: 4329936 ggttggagaaaggt 4329923 Score = 42.1 bits (21), Expect = 1.2 Identities = 35/40 (87%) Strand = Plus / Minus Query: 323 aggttgtagatgccctttgngatgttgtttcagcctcacc 362 ||||||| ||||| ||||| || |||||||||||||||| Sbjct: 4329822 aggttgtggatgcgctttgtgacattgtttcagcctcacc 4329783
>dbj|AP003047.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0666G04 Length = 141983 Score = 281 bits (142), Expect = 8e-73 Identities = 271/314 (86%) Strand = Plus / Minus Query: 13 tcacacatgaaaaacggtttttcaagaccactcttgaaatgctcagaagaggctaggcga 72 ||||||| |||||| |||||| ||||||||||||||||||| ||||||| | || | | Sbjct: 110006 tcacacaggaaaaatggttttgcaagaccactcttgaaatgtgcagaagatgttatacta 109947 Query: 73 aatggtaatgttgcaagtacatccgggaaagttcctgcaactttacaggctgaagcatct 132 |||||| |||| |||||||| || ||||||| ||||| |||||||| ||||| ||| Sbjct: 109946 aatggtgatgtcgcaagtacttctgggaaagccattgcaagtttacaggtggaagcttct 109887 Query: 133 gatttggctaacttccttaccatggatagaaatgggggttatcgaggctctcagactctc 192 |||||||| |||||||| |||||||| ||||||||||||| |||| ||||| |||||| Sbjct: 109886 gatttggcaaacttcctcaccatggaccgaaatgggggttacagaggttctcaaactctc 109827 Query: 193 ctaagttctgttatctcagaaaaacaggaattatgcttctctgttgtctcattgctctgg 252 ||||| ||||| | ||||| || ||||| ||||||||||||||||||||||||||||| Sbjct: 109826 ctaagatctgtactgtcagagaagcaggagctatgcttctctgttgtctcattgctctgg 109767 Query: 253 cataagcttattgcatctcctgaaacgcagatgtctgcagaaagtacatcagctcatcaa 312 || ||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||| Sbjct: 109766 cagaagctcattgcatctcccgaaatgcagatgtctgcagaaagtacatcagctcatcag 109707 Query: 313 ggttggagaaaggt 326 |||||||||||||| Sbjct: 109706 ggttggagaaaggt 109693 Score = 42.1 bits (21), Expect = 1.2 Identities = 35/40 (87%) Strand = Plus / Minus Query: 323 aggttgtagatgccctttgngatgttgtttcagcctcacc 362 ||||||| ||||| ||||| || |||||||||||||||| Sbjct: 109592 aggttgtggatgcgctttgtgacattgtttcagcctcacc 109553
>gb|AF469490.1| Triticum aestivum gigantea-like protein mRNA, partial cds Length = 573 Score = 250 bits (126), Expect = 3e-63 Identities = 137/141 (97%) Strand = Plus / Plus Query: 224 tatgcttctctgttgtctcattgctctggcataagcttattgcatctcctgaaacgcaga 283 ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct: 11 tatgcttctctgttgtctcgttgctctggcataagcttattgcatctcccgaaacgcaga 70 Query: 284 tgtctgcagaaagtacatcagctcatcaaggttggagaaaggttgtagatgccctttgng 343 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct: 71 tgtctgcagaaagtacatcagctcatcaaggttggagaaaggttgtagatgcactttgtg 130 Query: 344 atgttgtttcagcctcaccag 364 ||||||||||||||||||||| Sbjct: 131 atgttgtttcagcctcaccag 151
>gb|AY365039.1| Zea mays gigantea protein-like gene, partial sequence Length = 762 Score = 121 bits (61), Expect = 2e-24 Identities = 85/93 (91%) Strand = Plus / Plus Query: 234 tgttgtctcattgctctggcataagcttattgcatctcctgaaacgcagatgtctgcaga 293 ||||||||||||||||||||| ||||| || || |||||||||| ||||||||||||||| Sbjct: 17 tgttgtctcattgctctggcagaagctcatagcttctcctgaaatgcagatgtctgcaga 76 Query: 294 aagtacatcagctcatcaaggttggagaaaggt 326 ||||||||||||||| ||||| ||||| ||||| Sbjct: 77 aagtacatcagctcaccaaggatggaggaaggt 109 Score = 52.0 bits (26), Expect = 0.001 Identities = 37/41 (90%) Strand = Plus / Plus Query: 323 aggttgtagatgccctttgngatgttgtttcagcctcacca 363 ||||||| ||||| ||||| ||||| ||||||||||||||| Sbjct: 209 aggttgttgatgcactttgtgatgtcgtttcagcctcacca 249
>gb|AC146037.1| Pan troglodytes BAC clone RP43-44A5 from 7, complete sequence Length = 177637 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Plus Query: 204 tatctcagaaaaacaggaatta 225 |||||||||||||||||||||| Sbjct: 117850 tatctcagaaaaacaggaatta 117871
>gb|AC149286.4| Pan troglodytes BAC clone CH251-514L10 from chromosome 7, complete sequence Length = 180713 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 204 tatctcagaaaaacaggaatta 225 |||||||||||||||||||||| Sbjct: 108055 tatctcagaaaaacaggaatta 108034
>ref|NM_125810.2| Arabidopsis thaliana RPS28 (RIBOSOMAL PROTEIN S28); structural constituent of ribosome AT5G64140 (RPS28) mRNA, complete cds Length = 480 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 51 atgctcagaagaggctaggcgaaat 75 |||||||||||| |||||||||||| Sbjct: 60 atgctcagaagaagctaggcgaaat 36
>gb|AC093880.4| Homo sapiens BAC clone RP11-651C2 from 4, complete sequence Length = 169968 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 303 agctcatcaaggttggagaaa 323 ||||||||||||||||||||| Sbjct: 23733 agctcatcaaggttggagaaa 23753
>gb|AY059859.1| Arabidopsis thaliana 40S ribosomal protein S28 (At5g64140; MHJ24.12) mRNA, complete cds Length = 436 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 51 atgctcagaagaggctaggcgaaat 75 |||||||||||| |||||||||||| Sbjct: 48 atgctcagaagaagctaggcgaaat 24
>emb|BX833027.1|CNS0A0MP Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL30ZC03 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 420 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 51 atgctcagaagaggctaggcgaaat 75 |||||||||||| |||||||||||| Sbjct: 29 atgctcagaagaagctaggcgaaat 5
>emb|BX833714.1|CNS0A0F7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL72ZD08 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 430 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 51 atgctcagaagaggctaggcgaaat 75 |||||||||||| |||||||||||| Sbjct: 39 atgctcagaagaagctaggcgaaat 15
>gb|AY087546.1| Arabidopsis thaliana clone 36501 mRNA, complete sequence Length = 480 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 51 atgctcagaagaggctaggcgaaat 75 |||||||||||| |||||||||||| Sbjct: 61 atgctcagaagaagctaggcgaaat 37
>dbj|AB008266.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHJ24 Length = 48622 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 51 atgctcagaagaggctaggcgaaat 75 |||||||||||| |||||||||||| Sbjct: 41639 atgctcagaagaagctaggcgaaat 41663
>gb|L09755.1|ATHRP28A Arabidopsis thaliana ribosomal protein S28 mRNA, complete cds Length = 463 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 51 atgctcagaagaggctaggcgaaat 75 |||||||||||| |||||||||||| Sbjct: 44 atgctcagaagaagctaggcgaaat 20
>gb|AC132281.4| Mus musculus BAC clone RP24-348L6 from chromosome 7, complete sequence Length = 181949 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 156 ggatagaaatgggggttatcgagg 179 |||||||||||||||||| ||||| Sbjct: 162177 ggatagaaatgggggttagcgagg 162154
>gb|AC134426.20| Mus musculus chromosome 1, clone RP24-342A12, complete sequence Length = 196208 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 234 tgttgtctcattgctctggc 253 |||||||||||||||||||| Sbjct: 143468 tgttgtctcattgctctggc 143449
>gb|AC131129.4| Rattus norvegicus 17 BAC CH230-15O20 (Children's Hospital Oakland Research Institute) complete sequence Length = 232401 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 234 tgttgtctcattgctctggc 253 |||||||||||||||||||| Sbjct: 176681 tgttgtctcattgctctggc 176700
>gb|AC161762.4| Mus musculus BAC clone RP23-371K18 from chromosome 7, complete sequence Length = 207870 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 156 ggatagaaatgggggttatcgagg 179 |||||||||||||||||| ||||| Sbjct: 139933 ggatagaaatgggggttagcgagg 139956
>gb|AC129191.4| Mus musculus BAC clone RP24-81F10 from chromosome Y, complete sequence Length = 241616 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 234 tgttgtctcattgctctggc 253 |||||||||||||||||||| Sbjct: 97624 tgttgtctcattgctctggc 97643
>emb|CT010448.4| Mouse DNA sequence from clone RP23-290P4 on chromosome 17, complete sequence Length = 136671 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 234 tgttgtctcattgctctggc 253 |||||||||||||||||||| Sbjct: 76083 tgttgtctcattgctctggc 76102
>gb|AC140441.3| Mus musculus BAC clone RP23-82A21 from chromosome 5, complete sequence Length = 177052 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 234 tgttgtctcattgctctggc 253 |||||||||||||||||||| Sbjct: 122793 tgttgtctcattgctctggc 122774
>ref|XM_538358.2| PREDICTED: Canis familiaris similar to CG9581-PA (LOC481237), mRNA Length = 1657 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 300 atcagctcatcaaggttggagaaa 323 ||||||||||||||| |||||||| Sbjct: 956 atcagctcatcaaggatggagaaa 979
>emb|CR384088.10| Zebrafish DNA sequence from clone CH211-107K4 in linkage group 15, complete sequence Length = 156313 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 ttctgttatctcagaaaaac 217 |||||||||||||||||||| Sbjct: 38070 ttctgttatctcagaaaaac 38089
>gb|AC127357.5| Mus musculus BAC clone RP23-103P11 from chromosome 3, complete sequence Length = 220032 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 cttccttaccatggatagaa 163 |||||||||||||||||||| Sbjct: 19468 cttccttaccatggatagaa 19487
>gb|AC120042.3| Homo sapiens chromosome 8, clone RP11-659E9, complete sequence Length = 170940 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 tgcttcagcctcacacatga 22 |||||||||||||||||||| Sbjct: 85849 tgcttcagcctcacacatga 85868
>gb|AC019357.7| Homo sapiens chromosome 8, clone RP11-687A13, complete sequence Length = 181694 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 tgcttcagcctcacacatga 22 |||||||||||||||||||| Sbjct: 139064 tgcttcagcctcacacatga 139083
>gb|AC158672.6| Mus musculus 6 BAC RP23-64J23 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 216954 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 234 tgttgtctcattgctctggc 253 |||||||||||||||||||| Sbjct: 179396 tgttgtctcattgctctggc 179377
>dbj|AK081774.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130075O13 product:unclassifiable, full insert sequence Length = 3221 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 tttacaggctgaagcatctgattt 137 |||||||||| ||||||||||||| Sbjct: 1564 tttacaggcttaagcatctgattt 1587
>gb|AC153965.4| Mus musculus 10 BAC RP24-377E21 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 166350 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 234 tgttgtctcattgctctggc 253 |||||||||||||||||||| Sbjct: 119767 tgttgtctcattgctctggc 119786
>dbj|AK089132.1| Mus musculus 10 days neonate olfactory brain cDNA, RIKEN full-length enriched library, clone:E530011G23 product:unclassifiable, full insert sequence Length = 3087 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 tttacaggctgaagcatctgattt 137 |||||||||| ||||||||||||| Sbjct: 1358 tttacaggcttaagcatctgattt 1381
>dbj|AK082104.1| Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length enriched library, clone:C230007M13 product:unclassifiable, full insert sequence Length = 2458 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 tttacaggctgaagcatctgattt 137 |||||||||| ||||||||||||| Sbjct: 1336 tttacaggcttaagcatctgattt 1359
>emb|AL929215.18| Mouse DNA sequence from clone RP23-8L8 on chromosome 2, complete sequence Length = 159804 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 234 tgttgtctcattgctctggc 253 |||||||||||||||||||| Sbjct: 90001 tgttgtctcattgctctggc 90020
>gb|AF147082.1|HSGGH2 Homo sapiens gamma-glutamyl hydrolase gene, exons 3 through 7 Length = 8020 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 tgcttcagcctcacacatga 22 |||||||||||||||||||| Sbjct: 7226 tgcttcagcctcacacatga 7207
>gb|AC157017.3| Mus musculus 10 BAC RP24-559D16 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 170093 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 234 tgttgtctcattgctctggc 253 |||||||||||||||||||| Sbjct: 21646 tgttgtctcattgctctggc 21665
>emb|BX294195.4| Mouse DNA sequence from clone RP23-59F2 on chromosome X, complete sequence Length = 67271 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 234 tgttgtctcattgctctggc 253 |||||||||||||||||||| Sbjct: 62271 tgttgtctcattgctctggc 62252
>emb|CT010588.10| Mouse DNA sequence from clone RP23-150H18 on chromosome 12, complete sequence Length = 158004 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 tttacaggctgaagcatctgattt 137 |||||||||| ||||||||||||| Sbjct: 38733 tttacaggcttaagcatctgattt 38756
>gb|AC131184.4| Mus musculus BAC clone RP23-347G20 from 3, complete sequence Length = 203243 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 cttccttaccatggatagaa 163 |||||||||||||||||||| Sbjct: 68158 cttccttaccatggatagaa 68139
>emb|AL928882.10| Mouse DNA sequence from clone RP23-281I20 on chromosome 2, complete sequence Length = 147002 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 234 tgttgtctcattgctctggc 253 |||||||||||||||||||| Sbjct: 76937 tgttgtctcattgctctggc 76956
>emb|AL929572.10| Mouse DNA sequence from clone RP23-464H12 on chromosome 2, complete sequence Length = 191603 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 234 tgttgtctcattgctctggc 253 |||||||||||||||||||| Sbjct: 7406 tgttgtctcattgctctggc 7425
>gb|AC115744.9| Mus musculus chromosome 12, clone RP23-479M19, complete sequence Length = 211776 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 tttacaggctgaagcatctgattt 137 |||||||||| ||||||||||||| Sbjct: 96604 tttacaggcttaagcatctgattt 96627
>emb|AL732311.13| Mouse DNA sequence from clone RP23-125H15 on chromosome 2, complete sequence Length = 209215 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 234 tgttgtctcattgctctggc 253 |||||||||||||||||||| Sbjct: 106912 tgttgtctcattgctctggc 106893
>emb|AL672184.13| Mouse DNA sequence from clone RP23-421G11 on chromosome X, complete sequence Length = 211206 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 234 tgttgtctcattgctctggc 253 |||||||||||||||||||| Sbjct: 146193 tgttgtctcattgctctggc 146212
>gb|AC151922.2| Phaeodactylum tricornutum clone JGIAHOK-5A1, complete sequence Length = 38598 Score = 40.1 bits (20), Expect = 4.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 66 taggcgaaatggtaatgttgcaagtaca 93 |||||||||||| | ||||||||||||| Sbjct: 5325 taggcgaaatggaagtgttgcaagtaca 5298
>emb|AL844884.5| Mouse DNA sequence from clone RP23-266B14 on chromosome 2, complete sequence Length = 150285 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 234 tgttgtctcattgctctggc 253 |||||||||||||||||||| Sbjct: 10437 tgttgtctcattgctctggc 10456 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,357,732 Number of Sequences: 3902068 Number of extensions: 3357732 Number of successful extensions: 69352 Number of sequences better than 10.0: 55 Number of HSP's better than 10.0 without gapping: 55 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69220 Number of HSP's gapped (non-prelim): 125 length of query: 364 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 342 effective length of database: 17,147,199,772 effective search space: 5864342322024 effective search space used: 5864342322024 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)