ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | basd21m23 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 333 bits (168), Expect = 4e-88 Identities = 305/351 (86%) Strand = Plus / Plus Query: 30 aggnaggtgttcggcaaggtcgtggccgccgggcacgagccggtgtcgtacacgtactgc 89 ||| |||||||||||||| | ||||| ||||||||||||||||||||||||| |||||| Sbjct: 12419366 agggaggtgttcggcaagctggtggcgtccgggcacgagccggtgtcgtacacctactgc 12419425 Query: 90 ctgatggcgcaggctctggcacgcggcggcgaggtggacgcggccgtggccatattggac 149 |||||||||||||| ||||| ||||||||||||||||||||||||||| | | ||| Sbjct: 12419426 ctgatggcgcaggcgctggcgcgcggcggcgaggtggacgcggccgtgtcgctcctgggt 12419485 Query: 150 gacatggtgcgcaaggggtacgcgctgcggaagcgcgcgtacacggacgtggtgcgcgcg 209 || |||| ||||| ||| |||||||||||||||||||||||||| ||||| || |||||| Sbjct: 12419486 gagatggcgcgcaggggttacgcgctgcggaagcgcgcgtacaccgacgtcgtccgcgcg 12419545 Query: 210 ctgtgcgaccggagcaggacttacgacgctctccgggtgctggccgtggtgatcgcgaag 269 |||||||| || || || | |||||| || ||||||||||| |||||||||| | | Sbjct: 12419546 ctgtgcgagcgtggccgggcgcgcgacgcgctgcgggtgctggcgctggtgatcgccagg 12419605 Query: 270 gacttcgtgcccggccggaacgcgttcgacgcgctgctcgaagagctcagccggcagggg 329 |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| Sbjct: 12419606 gacttcgtgcccggccggaacgcgttcgacgcgctgctcggcgagctcgcccggcagggg 12419665 Query: 330 agatggcccgacgccatggcagtgtacgccgctgcggtgaagcggggcgtc 380 || ||||||||||| ||||| ||||||||||| || |||||||| |||||| Sbjct: 12419666 aggtggcccgacgcgatggccgtgtacgccgccgccgtgaagcgcggcgtc 12419716 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 417 gcgcgggatcaggagaaggaagag 440 ||||||||| |||||||||||||| Sbjct: 20498983 gcgcgggataaggagaaggaagag 20498960 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 caaggtcgtggccgccgggc 63 |||||||||||||||||||| Sbjct: 11903902 caaggtcgtggccgccgggc 11903883
>gb|AC125496.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0098H14, complete sequence Length = 132560 Score = 333 bits (168), Expect = 4e-88 Identities = 305/351 (86%) Strand = Plus / Plus Query: 30 aggnaggtgttcggcaaggtcgtggccgccgggcacgagccggtgtcgtacacgtactgc 89 ||| |||||||||||||| | ||||| ||||||||||||||||||||||||| |||||| Sbjct: 78384 agggaggtgttcggcaagctggtggcgtccgggcacgagccggtgtcgtacacctactgc 78443 Query: 90 ctgatggcgcaggctctggcacgcggcggcgaggtggacgcggccgtggccatattggac 149 |||||||||||||| ||||| ||||||||||||||||||||||||||| | | ||| Sbjct: 78444 ctgatggcgcaggcgctggcgcgcggcggcgaggtggacgcggccgtgtcgctcctgggt 78503 Query: 150 gacatggtgcgcaaggggtacgcgctgcggaagcgcgcgtacacggacgtggtgcgcgcg 209 || |||| ||||| ||| |||||||||||||||||||||||||| ||||| || |||||| Sbjct: 78504 gagatggcgcgcaggggttacgcgctgcggaagcgcgcgtacaccgacgtcgtccgcgcg 78563 Query: 210 ctgtgcgaccggagcaggacttacgacgctctccgggtgctggccgtggtgatcgcgaag 269 |||||||| || || || | |||||| || ||||||||||| |||||||||| | | Sbjct: 78564 ctgtgcgagcgtggccgggcgcgcgacgcgctgcgggtgctggcgctggtgatcgccagg 78623 Query: 270 gacttcgtgcccggccggaacgcgttcgacgcgctgctcgaagagctcagccggcagggg 329 |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| Sbjct: 78624 gacttcgtgcccggccggaacgcgttcgacgcgctgctcggcgagctcgcccggcagggg 78683 Query: 330 agatggcccgacgccatggcagtgtacgccgctgcggtgaagcggggcgtc 380 || ||||||||||| ||||| ||||||||||| || |||||||| |||||| Sbjct: 78684 aggtggcccgacgcgatggccgtgtacgccgccgccgtgaagcgcggcgtc 78734
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 333 bits (168), Expect = 4e-88 Identities = 305/351 (86%) Strand = Plus / Plus Query: 30 aggnaggtgttcggcaaggtcgtggccgccgggcacgagccggtgtcgtacacgtactgc 89 ||| |||||||||||||| | ||||| ||||||||||||||||||||||||| |||||| Sbjct: 12416129 agggaggtgttcggcaagctggtggcgtccgggcacgagccggtgtcgtacacctactgc 12416188 Query: 90 ctgatggcgcaggctctggcacgcggcggcgaggtggacgcggccgtggccatattggac 149 |||||||||||||| ||||| ||||||||||||||||||||||||||| | | ||| Sbjct: 12416189 ctgatggcgcaggcgctggcgcgcggcggcgaggtggacgcggccgtgtcgctcctgggt 12416248 Query: 150 gacatggtgcgcaaggggtacgcgctgcggaagcgcgcgtacacggacgtggtgcgcgcg 209 || |||| ||||| ||| |||||||||||||||||||||||||| ||||| || |||||| Sbjct: 12416249 gagatggcgcgcaggggttacgcgctgcggaagcgcgcgtacaccgacgtcgtccgcgcg 12416308 Query: 210 ctgtgcgaccggagcaggacttacgacgctctccgggtgctggccgtggtgatcgcgaag 269 |||||||| || || || | |||||| || ||||||||||| |||||||||| | | Sbjct: 12416309 ctgtgcgagcgtggccgggcgcgcgacgcgctgcgggtgctggcgctggtgatcgccagg 12416368 Query: 270 gacttcgtgcccggccggaacgcgttcgacgcgctgctcgaagagctcagccggcagggg 329 |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| Sbjct: 12416369 gacttcgtgcccggccggaacgcgttcgacgcgctgctcggcgagctcgcccggcagggg 12416428 Query: 330 agatggcccgacgccatggcagtgtacgccgctgcggtgaagcggggcgtc 380 || ||||||||||| ||||| ||||||||||| || |||||||| |||||| Sbjct: 12416429 aggtggcccgacgcgatggccgtgtacgccgccgccgtgaagcgcggcgtc 12416479 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 417 gcgcgggatcaggagaaggaagag 440 ||||||||| |||||||||||||| Sbjct: 20492012 gcgcgggataaggagaaggaagag 20491989 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 caaggtcgtggccgccgggc 63 |||||||||||||||||||| Sbjct: 11900665 caaggtcgtggccgccgggc 11900646
>dbj|AK100067.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013162P09, full insert sequence Length = 2292 Score = 333 bits (168), Expect = 4e-88 Identities = 305/351 (86%) Strand = Plus / Plus Query: 30 aggnaggtgttcggcaaggtcgtggccgccgggcacgagccggtgtcgtacacgtactgc 89 ||| |||||||||||||| | ||||| ||||||||||||||||||||||||| |||||| Sbjct: 1320 agggaggtgttcggcaagctggtggcgtccgggcacgagccggtgtcgtacacctactgc 1379 Query: 90 ctgatggcgcaggctctggcacgcggcggcgaggtggacgcggccgtggccatattggac 149 |||||||||||||| ||||| ||||||||||||||||||||||||||| | | ||| Sbjct: 1380 ctgatggcgcaggcgctggcgcgcggcggcgaggtggacgcggccgtgtcgctcctgggt 1439 Query: 150 gacatggtgcgcaaggggtacgcgctgcggaagcgcgcgtacacggacgtggtgcgcgcg 209 || |||| ||||| ||| |||||||||||||||||||||||||| ||||| || |||||| Sbjct: 1440 gagatggcgcgcaggggttacgcgctgcggaagcgcgcgtacaccgacgtcgtccgcgcg 1499 Query: 210 ctgtgcgaccggagcaggacttacgacgctctccgggtgctggccgtggtgatcgcgaag 269 |||||||| || || || | |||||| || ||||||||||| |||||||||| | | Sbjct: 1500 ctgtgcgagcgtggccgggcgcgcgacgcgctgcgggtgctggcgctggtgatcgccagg 1559 Query: 270 gacttcgtgcccggccggaacgcgttcgacgcgctgctcgaagagctcagccggcagggg 329 |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| Sbjct: 1560 gacttcgtgcccggccggaacgcgttcgacgcgctgctcggcgagctcgcccggcagggg 1619 Query: 330 agatggcccgacgccatggcagtgtacgccgctgcggtgaagcggggcgtc 380 || ||||||||||| ||||| ||||||||||| || |||||||| |||||| Sbjct: 1620 aggtggcccgacgcgatggccgtgtacgccgccgccgtgaagcgcggcgtc 1670
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 48.1 bits (24), Expect = 0.030 Identities = 27/28 (96%) Strand = Plus / Minus Query: 395 gcgtcacgtcaaggaggcgctggcgcgg 422 |||||||||| ||||||||||||||||| Sbjct: 3758257 gcgtcacgtcgaggaggcgctggcgcgg 3758230
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 48.1 bits (24), Expect = 0.030 Identities = 27/28 (96%) Strand = Plus / Minus Query: 193 cggacgtggtgcgcgcgctgtgcgaccg 220 ||||| |||||||||||||||||||||| Sbjct: 4198847 cggacctggtgcgcgcgctgtgcgaccg 4198820
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 357 gccgctgcggtgaagcggggcg 378 |||||||||||||||||||||| Sbjct: 2116 gccgctgcggtgaagcggggcg 2095 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 ggtgttcggcaaggtcgtgg 54 |||||||||||||||||||| Sbjct: 1174638 ggtgttcggcaaggtcgtgg 1174619
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 357 gccgctgcggtgaagcggggcg 378 |||||||||||||||||||||| Sbjct: 2291 gccgctgcggtgaagcggggcg 2270
>gb|AE012225.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 133 of 460 of the complete genome Length = 10544 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 119 cgaggtggacgcggccgtggcc 140 |||||||||||||||||||||| Sbjct: 4801 cgaggtggacgcggccgtggcc 4822
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 119 cgaggtggacgcggccgtggcc 140 |||||||||||||||||||||| Sbjct: 3569227 cgaggtggacgcggccgtggcc 3569206 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 gcgttcgacgcgctgctcga 310 |||||||||||||||||||| Sbjct: 4324452 gcgttcgacgcgctgctcga 4324471
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 48 gtcgtggccgccgggcacgag 68 ||||||||||||||||||||| Sbjct: 3291034 gtcgtggccgccgggcacgag 3291014 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 40 tcggcaaggtcgtggccgccg 60 ||||||||||||||||||||| Sbjct: 2017255 tcggcaaggtcgtggccgccg 2017235
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 37 tgttcggcaaggtcgtggccgccgg 61 ||||||||| ||||||||||||||| Sbjct: 2622217 tgttcggcatggtcgtggccgccgg 2622193
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 147 gacgacatggtgcgcaaggggtacg 171 ||||| ||||||||||||||||||| Sbjct: 7852198 gacgagatggtgcgcaaggggtacg 7852222 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 53 ggccgccgggcacgagccggt 73 ||||||||||||||||||||| Sbjct: 5845984 ggccgccgggcacgagccggt 5846004
>gb|AF546146.1| Lechevalieria aerocolonigenes UnbL (unbL), UnbV (unbV), UnbU (unbU), PksE (pksE), and TebC (tebC) genes, complete cds Length = 10015 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 246 gtgctggccgtggtgatcgcg 266 ||||||||||||||||||||| Sbjct: 3236 gtgctggccgtggtgatcgcg 3256
>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence Length = 1395069 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 tcgacgcgctgctcgaagag 314 |||||||||||||||||||| Sbjct: 401471 tcgacgcgctgctcgaagag 401452
>ref|NM_184789.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1209 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 417 gcgcgggatcaggagaaggaagag 440 ||||||||| |||||||||||||| Sbjct: 802 gcgcgggataaggagaaggaagag 825
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 gcgttcgacgcgctgctcga 310 |||||||||||||||||||| Sbjct: 3451344 gcgttcgacgcgctgctcga 3451325
>gb|AY771999.1| Synthetic construct DEBS polyketide synthase gene cluster, complete sequence Length = 31531 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 ggcgcaggctctggcacgcg 114 |||||||||||||||||||| Sbjct: 2321 ggcgcaggctctggcacgcg 2302
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 gttcgacgcgctgctcgaag 312 |||||||||||||||||||| Sbjct: 849811 gttcgacgcgctgctcgaag 849830
>ref|NM_011552.1| Mus musculus Treacher Collins Franceschetti syndrome 1, homolog (Tcof1), mRNA Length = 4013 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 422 ggatcaggagaaggaagagg 441 |||||||||||||||||||| Sbjct: 314 ggatcaggagaaggaagagg 333
>gb|AC104279.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1393_A07, complete sequence Length = 159932 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 ggcggcgaggtggacgcggc 133 |||||||||||||||||||| Sbjct: 66629 ggcggcgaggtggacgcggc 66610
>ref|XM_658962.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN6450.2), mRNA Length = 744 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 ggtggacgcggccgtggcca 141 |||||||||||||||||||| Sbjct: 213 ggtggacgcggccgtggcca 232
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 399 cacgtcaaggaggcgctggcgcgg 422 |||||| ||||||||||||||||| Sbjct: 1158452 cacgtcgaggaggcgctggcgcgg 1158475
>gb|AC139759.4| Mus musculus BAC clone RP23-385E10 from chromosome 18, complete sequence Length = 200426 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 422 ggatcaggagaaggaagagg 441 |||||||||||||||||||| Sbjct: 128227 ggatcaggagaaggaagagg 128208
>ref|XM_534781.2| PREDICTED: Canis familiaris similar to Actin, aortic smooth muscle (Alpha-actin 2) (LOC477587), mRNA Length = 1293 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 119 cgaggtggacgcggccgtggccat 142 ||||| |||||||||||||||||| Sbjct: 728 cgaggaggacgcggccgtggccat 705
>gb|BC021514.1| Mus musculus Treacher Collins Franceschetti syndrome 1, homolog, mRNA (cDNA clone IMAGE:5351783), containing frame-shift errors Length = 4088 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 422 ggatcaggagaaggaagagg 441 |||||||||||||||||||| Sbjct: 375 ggatcaggagaaggaagagg 394
>gb|BC046608.1| Mus musculus Treacher Collins Franceschetti syndrome 1, homolog, mRNA (cDNA clone IMAGE:6397792), containing frame-shift errors Length = 3772 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 422 ggatcaggagaaggaagagg 441 |||||||||||||||||||| Sbjct: 324 ggatcaggagaaggaagagg 343
>gb|BC060105.1| Mus musculus Treacher Collins Franceschetti syndrome 1, homolog, mRNA (cDNA clone IMAGE:6418212), partial cds Length = 4001 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 422 ggatcaggagaaggaagagg 441 |||||||||||||||||||| Sbjct: 323 ggatcaggagaaggaagagg 342
>gb|AC091302.5| Oryza sativa chromosome 3 BAC OSJNBb0015I21 genomic sequence, complete sequence Length = 101073 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 417 gcgcgggatcaggagaaggaagag 440 ||||||||| |||||||||||||| Sbjct: 13048 gcgcgggataaggagaaggaagag 13025
>gb|BC057342.1| Mus musculus Treacher Collins Franceschetti syndrome 1, homolog, mRNA (cDNA clone MGC:67019 IMAGE:6825735), complete cds Length = 4631 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 422 ggatcaggagaaggaagagg 441 |||||||||||||||||||| Sbjct: 323 ggatcaggagaaggaagagg 342
>gb|BC052669.1| Mus musculus Treacher Collins Franceschetti syndrome 1, homolog, mRNA (cDNA clone IMAGE:30055011), partial cds Length = 4039 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 422 ggatcaggagaaggaagagg 441 |||||||||||||||||||| Sbjct: 342 ggatcaggagaaggaagagg 361
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 399 cacgtcaaggaggcgctggcgcgg 422 |||||| ||||||||||||||||| Sbjct: 1451356 cacgtcgaggaggcgctggcgcgg 1451379
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 ctgcctgatggcgcaggctc 105 |||||||||||||||||||| Sbjct: 1402294 ctgcctgatggcgcaggctc 1402275
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 399 cacgtcaaggaggcgctggcgcgg 422 |||||| ||||||||||||||||| Sbjct: 3652196 cacgtcgaggaggcgctggcgcgg 3652173
>gb|CP000282.1| Saccharophagus degradans 2-40, complete genome Length = 5057531 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 gccatattggacgacatggt 157 |||||||||||||||||||| Sbjct: 2187174 gccatattggacgacatggt 2187155
>gb|AE012157.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 65 of 460 of the complete genome Length = 12504 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 gcgttcgacgcgctgctcga 310 |||||||||||||||||||| Sbjct: 3845 gcgttcgacgcgctgctcga 3826
>gb|AF204145.1| Xanthomonas campestris pv. campestris LPS biosynthetic cluster, partial sequence; and putative electron-transferring flavoprotein beta subunit (etfS) and putative electron-transferring flavoprotein alpha subunit (etfL) genes, complete cds Length = 37753 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 gcgttcgacgcgctgctcga 310 |||||||||||||||||||| Sbjct: 35794 gcgttcgacgcgctgctcga 35813
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 245 ggtgctggccgtggtgatcg 264 |||||||||||||||||||| Sbjct: 2479398 ggtgctggccgtggtgatcg 2479417
>gb|AC105225.5| Homo sapiens chromosome 8, clone RP11-775E18, complete sequence Length = 135609 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 427 aggagaaggaagaggcgtgg 446 |||||||||||||||||||| Sbjct: 52235 aggagaaggaagaggcgtgg 52216
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 gcgttcgacgcgctgctcga 310 |||||||||||||||||||| Sbjct: 2924960 gcgttcgacgcgctgctcga 2924979
>dbj|AK089518.1| Mus musculus B6-derived CD11 +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F730044M07 product:TREACLE PROTEIN (TREACHER COLLINS SYNDROME PROTEIN) (PUTATIVE NUCLEOLAR TRAFFICKING PHOSPHOPROTEIN) homolog [Mus musculus], full insert sequence Length = 4020 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 422 ggatcaggagaaggaagagg 441 |||||||||||||||||||| Sbjct: 336 ggatcaggagaaggaagagg 355
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 ggcggcgaggtggacgcggc 133 |||||||||||||||||||| Sbjct: 17536824 ggcggcgaggtggacgcggc 17536805
>gb|AC015599.5|AC015599 Homo sapiens chromosome , clone RP11-45B19, complete sequence Length = 162607 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 427 aggagaaggaagaggcgtgg 446 |||||||||||||||||||| Sbjct: 32144 aggagaaggaagaggcgtgg 32125
>gb|AC084319.5|AC084319 Oryza sativa chromosome 3 BAC OSJNBa0004B24 genomic sequence, complete sequence Length = 152883 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 417 gcgcgggatcaggagaaggaagag 440 ||||||||| |||||||||||||| Sbjct: 143283 gcgcgggataaggagaaggaagag 143260
>dbj|AB167394.1| Myxococcus xanthus cbpA and cbpB genes for CRP homologous protein, PKA regulatory subunit homologous protein, complete cds Length = 5262 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 cggacgtggtgcgcgcgctg 212 |||||||||||||||||||| Sbjct: 3373 cggacgtggtgcgcgcgctg 3392
>gb|AC137070.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0035J18, from chromsome 3, complete sequence Length = 162711 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 caaggtcgtggccgccgggc 63 |||||||||||||||||||| Sbjct: 6751 caaggtcgtggccgccgggc 6770
>gb|AY971524.1| Corallococcus sp. KYC1037 putative cAMP-binding protein gene, complete cds Length = 1218 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 cggacgtggtgcgcgcgctg 212 |||||||||||||||||||| Sbjct: 533 cggacgtggtgcgcgcgctg 552
>gb|AY971523.1| Stigmatella sp. KYC1019 putative cAMP-binding protein gene, complete cds Length = 1218 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 cggacgtggtgcgcgcgctg 212 |||||||||||||||||||| Sbjct: 533 cggacgtggtgcgcgcgctg 552
>gb|AY971522.1| Myxobacter sp. HK1 putative cAMP-binding protein gene, complete cds Length = 1218 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 cggacgtggtgcgcgcgctg 212 |||||||||||||||||||| Sbjct: 533 cggacgtggtgcgcgcgctg 552
>gb|AC135075.5| Homo sapiens chromosome 8, clone RP11-557G24, complete sequence Length = 72016 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 427 aggagaaggaagaggcgtgg 446 |||||||||||||||||||| Sbjct: 64646 aggagaaggaagaggcgtgg 64627
>dbj|AK069396.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014K13, full insert sequence Length = 1824 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 417 gcgcgggatcaggagaaggaagag 440 ||||||||| |||||||||||||| Sbjct: 1022 gcgcgggataaggagaaggaagag 1045
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 gcgttcgacgcgctgctcga 310 |||||||||||||||||||| Sbjct: 4277118 gcgttcgacgcgctgctcga 4277099
>gb|AY106609.1| Zea mays PCO140750 mRNA sequence Length = 634 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 111 cgcggcggcgaggtggacgcggcc 134 ||||||||||||| |||||||||| Sbjct: 193 cgcggcggcgaggcggacgcggcc 170
>gb|AC112948.12| Mus musculus chromosome 8, clone RP23-299I18, complete sequence Length = 197546 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 422 ggatcaggagaaggaagagg 441 |||||||||||||||||||| Sbjct: 137366 ggatcaggagaaggaagagg 137385
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 408 gaggcgctggcgcgggatcaggagaagg 435 ||||||||||||||||||| | |||||| Sbjct: 2425473 gaggcgctggcgcgggatccgcagaagg 2425446
>gb|AF001794.1|MMAF001794 Mus musculus Treacher Collins Syndrome protein (Tcof1) mRNA, complete cds Length = 4013 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 422 ggatcaggagaaggaagagg 441 |||||||||||||||||||| Sbjct: 314 ggatcaggagaaggaagagg 333
>gb|U81030.1|MMU81030 Mus musculus treacle (tcof1) mRNA, complete cds Length = 4428 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 422 ggatcaggagaaggaagagg 441 |||||||||||||||||||| Sbjct: 312 ggatcaggagaaggaagagg 331
>gb|AC126222.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0014I10, complete sequence Length = 113946 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 caaggtcgtggccgccgggc 63 |||||||||||||||||||| Sbjct: 5164 caaggtcgtggccgccgggc 5145 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,863,743 Number of Sequences: 3902068 Number of extensions: 2863743 Number of successful extensions: 66075 Number of sequences better than 10.0: 58 Number of HSP's better than 10.0 without gapping: 60 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 63498 Number of HSP's gapped (non-prelim): 2577 length of query: 547 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 524 effective length of database: 17,143,297,704 effective search space: 8983087996896 effective search space used: 8983087996896 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
