ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd22b20 |
|---|---|
| Clone Library Name | barley_pub |
>ERF_HUMAN (P50548) ETS domain-containing transcription factor ERF (Ets2| repressor factor) Length = 548 Score = 35.4 bits (80), Expect = 0.11 Identities = 25/77 (32%), Positives = 33/77 (42%) Frame = +1 Query: 73 PT*PTRGTFPPLVLAAPCMPASGSRHCSSS*PPKC*RVTNFEMVVAATGKRKRDLSEDEV 252 P P + PP+ P +P+S S SSS P F++ G+R+R E V Sbjct: 342 PQRPDKCPLPPMAPETPPVPSSASSSSSSSSSP-----FKFKLQPPPLGRRQRAAGEKAV 396 Query: 253 LARDNPDGASGGGAARG 303 D G S GG A G Sbjct: 397 AGADK-SGGSAGGLAEG 412
>ERF_MOUSE (P70459) ETS domain-containing transcription factor ERF| Length = 551 Score = 33.9 bits (76), Expect = 0.33 Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 1/78 (1%) Frame = +1 Query: 73 PT*PTRGTFPPLVLAAPCMPASGSRHCSSS*PPKC*RVTNFEMVVAATGKRKRDLSEDEV 252 P P + PP+ P +P+S S SSS P F++ G+R+R E Sbjct: 342 PQRPDKCPLPPMAPETPPVPSSASSSSSSSSSP-----FKFKLQPPPLGRRQRAAGEKAP 396 Query: 253 LARDNPDGASG-GGAARG 303 D G SG GG A G Sbjct: 397 GGTDKSSGGSGSGGLAEG 414
>PCDH8_HUMAN (O95206) Protocadherin-8 precursor (Arcadlin)| Length = 1070 Score = 31.6 bits (70), Expect = 1.6 Identities = 13/44 (29%), Positives = 21/44 (47%) Frame = +1 Query: 202 VVAATGKRKRDLSEDEVLARDNPDGASGGGAARGEKEHRLEGAG 333 + +RK+++ + L + P A GG +A G E GAG Sbjct: 770 IATTCNRRKKEVRKGGALREERPGAAGGGASAPGSPEEAARGAG 813
>PABP2_MOUSE (Q8CCS6) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 301 Score = 31.6 bits (70), Expect = 1.6 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%) Frame = +1 Query: 274 GASGG-GAARGEKEHRLEGAGGQDGHGD 354 GA+GG G+ G + H + GAGG+ G GD Sbjct: 11 GAAGGRGSGPGRRRHLVPGAGGEAGEGD 38
>HXB3_HUMAN (P14651) Homeobox protein Hox-B3 (Hox-2G) (Hox-2.7)| Length = 431 Score = 31.6 bits (70), Expect = 1.6 Identities = 36/127 (28%), Positives = 46/127 (36%), Gaps = 5/127 (3%) Frame = +1 Query: 1 DLGRRCCRVASAPPSLGVAADRSLPT*PTRGTFPPLVLAAPCMPASGSRHC---SSS*PP 171 +L C R AP +L G+ PP AAP S S + S S PP Sbjct: 68 ELNGSCMRPGLAPETLSAPP----------GSPPPS--AAPTSATSNSSNGGGPSKSGPP 115 Query: 172 KC*RVTNFEMV--VAATGKRKRDLSEDEVLARDNPDGASGGGAARGEKEHRLEGAGGQDG 345 KC TN + + K R S+ + + +G GGG G G GG G Sbjct: 116 KCGPGTNSTLTKQIFPWMKESRQTSKLKNNSPGTAEGCGGGGGGGGGGGSGGSGGGGGGG 175 Query: 346 HGDHLCP 366 G P Sbjct: 176 GGGDKSP 182
>XYLT1_MOUSE (Q811B1) Xylosyltransferase 1 (EC 2.4.2.26) (Xylosyltransferase I)| (Peptide O-xylosyltransferase 1) Length = 953 Score = 31.6 bits (70), Expect = 1.6 Identities = 15/32 (46%), Positives = 19/32 (59%) Frame = +1 Query: 208 AATGKRKRDLSEDEVLARDNPDGASGGGAARG 303 AA + +RDL+ AR P G +GGG ARG Sbjct: 61 AAPRRERRDLAAHLPAARGGPGGRAGGGGARG 92
>HASP_MOUSE (Q9Z0R0) Serine/threonine-protein kinase Haspin (EC 2.7.11.1)| (Haploid germ cell-specific nuclear protein kinase) (Germ cell-specific gene 2 protein) Length = 754 Score = 26.9 bits (58), Expect(2) = 6.0 Identities = 14/47 (29%), Positives = 23/47 (48%) Frame = +1 Query: 232 DLSEDEVLARDNPDGASGGGAARGEKEHRLEGAGGQDGHGDHLCPRV 372 D +E +A D+PD G+ G++ R G+G ++ PRV Sbjct: 51 DSNESPAVASDDPDDPDFPGSLVGQRRRRPRGSGSRNQRTLTNTPRV 97 Score = 21.2 bits (43), Expect(2) = 6.0 Identities = 7/10 (70%), Positives = 8/10 (80%) Frame = +2 Query: 83 QPGGLSLHWF 112 QPGGL+ WF Sbjct: 27 QPGGLAEQWF 36
>COL7_ARATH (Q9C9A9) Putative zinc finger protein CONSTANS-LIKE 7| Length = 392 Score = 29.6 bits (65), Expect = 6.2 Identities = 13/19 (68%), Positives = 15/19 (78%) Frame = +3 Query: 177 LTSHKLRDGGGSDGEAEAR 233 +T + RDGGGSDGE EAR Sbjct: 330 VTRQQGRDGGGSDGEREAR 348
>TILS_PSEPK (Q88MG3) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)| (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) Length = 427 Score = 29.6 bits (65), Expect = 6.2 Identities = 16/43 (37%), Positives = 20/43 (46%) Frame = -3 Query: 186 DSSALWRLTAGTVARSRCRHTRRSKNQWRESPPGWLRWQGPIG 58 D+ +WRL G + RS R S W + P G L W P G Sbjct: 290 DARPVWRLADGRLVRSHGRIWWLS-GDWLQQPAGSLAWPDPDG 331
>GLK_BACSU (P54495) Glucokinase (EC 2.7.1.2) (Glucose kinase)| Length = 321 Score = 29.6 bits (65), Expect = 6.2 Identities = 13/25 (52%), Positives = 15/25 (60%) Frame = +1 Query: 274 GASGGGAARGEKEHRLEGAGGQDGH 348 G GG A GE H + GAGG+ GH Sbjct: 140 GVGGGIIANGEILHGINGAGGEIGH 164
>STAC3_XENTR (Q68F99) SH3 and cysteine-rich domain-containing protein 3| Length = 337 Score = 29.6 bits (65), Expect = 6.2 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 2/58 (3%) Frame = +2 Query: 74 QRSQPGGLSLHWF--LLRRVCLHRDRATVPAVNRQSADESQTSRWWWQRRGSGSEIFP 241 +++QPG + H+F L R L +D A R + + WW + G + FP Sbjct: 213 KKAQPGFMQSHYFVALYRFKALEKDDLDFQAGERITVIDDSNEEWWRGKVGEKAGYFP 270
>RYR1_PIG (P16960) Ryanodine receptor 1 (Skeletal muscle-type ryanodine| receptor) (RyR1) (RYR-1) (Skeletal muscle calcium release channel) Length = 5035 Score = 25.0 bits (53), Expect(2) = 6.5 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%) Frame = +1 Query: 217 GKRKRDLSEDEVLARD-NPDGASGGGAARGEKEHRLEGAGGQDGHGD 354 G+ ++EV ++ P GA G A R EGAGG GD Sbjct: 4409 GEAWEGAGDEEVAVQEAGPGGADGAVAVAEGGPFRPEGAGGLGDMGD 4455 Score = 22.7 bits (47), Expect(2) = 6.5 Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = +2 Query: 449 GDESDLECEIEPFPKPSNEAA 511 G+E +L E EP P+P E A Sbjct: 4478 GEEEELPPEPEPEPEPEPEKA 4498
>VTS1_GIBZE (Q4IBN1) Protein VTS1| Length = 617 Score = 29.3 bits (64), Expect = 8.1 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 2/76 (2%) Frame = -2 Query: 505 FVARLRKGFNLTFQVA--LITQRLRANILGILDEGMSVGHVAPKHLVLAGRGDPRGRLGH 332 F + GF + V+ L++ +++ +G L G G+++ ++ GR PRGR G Sbjct: 480 FTSPQNNGFLSAYDVSSPLLSAGMQSVNMGSLGMGGHEGYLSDHSDMVRGRS-PRGRRGS 538 Query: 331 QRPPVDAPSLRVLRHL 284 +PP D +L+ + Sbjct: 539 SKPPEDPTDPTLLQDI 554
>PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 29.3 bits (64), Expect = 8.1 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%) Frame = +1 Query: 274 GASGG-GAARGEKEHRLEGAGGQDGHG 351 GA+GG G+ G + H + GAGG+ G G Sbjct: 11 GAAGGRGSGPGRRRHLVPGAGGEAGEG 37
>PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA-binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 29.3 bits (64), Expect = 8.1 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%) Frame = +1 Query: 274 GASGG-GAARGEKEHRLEGAGGQDGHG 351 GA+GG G+ G + H + GAGG+ G G Sbjct: 11 GAAGGRGSGPGRRRHLVPGAGGEAGEG 37
>SHAN1_RAT (Q9WV48) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)| (GKAP/SAPAP-interacting protein) (SPANK-1) (Synamon) (Somatostatin receptor-interacting protein) (SSTR-interacting protein) (SSTRIP) Length = 2167 Score = 29.3 bits (64), Expect = 8.1 Identities = 16/35 (45%), Positives = 18/35 (51%) Frame = -1 Query: 467 PSRSHHPEAARQYPRHSR*RHVGRPCSAKASGTRG 363 PSR HPE A++ PR R G P A GT G Sbjct: 500 PSRGRHPEDAKRQPR-GRPSSSGTPRDGPAGGTGG 533
>OPT6_ARATH (Q9T095) Oligopeptide transporter 6 (AtOPT6)| Length = 736 Score = 29.3 bits (64), Expect = 8.1 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%) Frame = -3 Query: 201 HLEVCDSSALWRLTAGTVARSRCR--HTRRSKNQWRESPPGW 82 H+ V + S LW+ T G +++ HTR K +RE P W Sbjct: 375 HVLVFNGSDLWKQTRGAFQKNKKMDIHTRIMKKNYREVPLWW 416
>INTF_ECOLI (P71298) Putative prophage CP4-6 integrase| Length = 466 Score = 29.3 bits (64), Expect = 8.1 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 2/66 (3%) Frame = +2 Query: 170 QSADESQTSRWWWQRRGS--GSEIFPRTRYSPATILTALQEVAQHAERRSIDWRALVAKT 343 QS + W R S G I PR+ ++ A +L L ++ H RRS A + Sbjct: 352 QSPNSDVNKEGWVFRSNSKSGKIIEPRSAHNRALVLAELPHISLHGLRRSFGTLAEWVEV 411 Query: 344 ATGITS 361 TGI + Sbjct: 412 PTGIVA 417
>CIC_DROME (Q9U1H0) Putative transcription factor capicua (Protein fettucine)| Length = 1403 Score = 29.3 bits (64), Expect = 8.1 Identities = 12/36 (33%), Positives = 16/36 (44%) Frame = +1 Query: 268 PDGASGGGAARGEKEHRLEGAGGQDGHGDHLCPRVP 375 P G + G A G+ + RL G D +CP P Sbjct: 574 PGGKASGAAGTGDAKQRLVSVDGSDSLEHDMCPSTP 609
>XYLT1_HUMAN (Q86Y38) Xylosyltransferase 1 (EC 2.4.2.26) (Xylosyltransferase I)| (XylT-I) (XT-I) (Peptide O-xylosyltransferase 1) Length = 959 Score = 29.3 bits (64), Expect = 8.1 Identities = 14/43 (32%), Positives = 19/43 (44%) Frame = +1 Query: 211 ATGKRKRDLSEDEVLARDNPDGASGGGAARGEKEHRLEGAGGQ 339 A + +RDL + AR G GGG RG + G G+ Sbjct: 62 APRRERRDLPAEPAAARGGGGGGGGGGGGRGPQARARGGGPGE 104
>SHAN1_HUMAN (Q9Y566) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)| (Somatostatin receptor-interacting protein) (SSTR-interacting protein) (SSTRIP) Length = 2161 Score = 29.3 bits (64), Expect = 8.1 Identities = 16/35 (45%), Positives = 18/35 (51%) Frame = -1 Query: 467 PSRSHHPEAARQYPRHSR*RHVGRPCSAKASGTRG 363 PSR HPE A++ PR R G P A GT G Sbjct: 500 PSRGRHPEDAKRQPR-GRPSSSGTPREGPAGGTGG 533
>R4RL2_HUMAN (Q86UN3) Reticulon-4 receptor-like 2 precursor (Nogo-66 receptor| homolog 1) (Nogo-66 receptor-related protein 2) (NgR2) (Nogo receptor-like 3) Length = 420 Score = 29.3 bits (64), Expect = 8.1 Identities = 29/86 (33%), Positives = 35/86 (40%), Gaps = 2/86 (2%) Frame = +1 Query: 115 AAPCMPASGSRHCSSS*PPKC*RVTNFEMVVAATGKRKRDLSEDEVLARDNPDGASGG-- 288 AAP P S +R SSS N VA G D S L RD P S G Sbjct: 313 AAPTRPGSRARGNSSS---------NHLYGVAEAGAPPADPS---TLYRDLPAEDSRGRQ 360 Query: 289 GAARGEKEHRLEGAGGQDGHGDHLCP 366 G ++ G GG+D G+ +CP Sbjct: 361 GGDAPTEDDYWGGYGGEDQRGEQMCP 386
>RYR1_RABIT (P11716) Ryanodine receptor 1 (Skeletal muscle-type ryanodine| receptor) (RyR1) (RYR-1) (Skeletal muscle calcium release channel) Length = 5037 Score = 23.9 bits (50), Expect(2) = 8.3 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 5/54 (9%) Frame = +1 Query: 208 AATGKRKRDLSE----DEVLARD-NPDGASGGGAARGEKEHRLEGAGGQDGHGD 354 A G+ + D +E +EV + P GA G A R EGAGG GD Sbjct: 4405 AGEGEGEGDAAEGDGDEEVAGHEAGPGGAEGVVAVADGGPFRPEGAGGLGDMGD 4458 Score = 23.5 bits (49), Expect(2) = 8.3 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = +2 Query: 449 GDESDLECEIEPFPKPSNEAAAE 517 G+E +L E EP P+P E A E Sbjct: 4481 GEEEELVPEPEPEPEPEPEKADE 4503 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,025,848 Number of Sequences: 219361 Number of extensions: 1888097 Number of successful extensions: 7521 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 6828 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7487 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4700377760 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
