No.
Definition
Score (bits)
E Value
1 ref|XM_477778.1| Oryza sativa (japonica cultivar-group), mRNA
196
5e-47
2 ref|XM_477777.1| Oryza sativa (japonica cultivar-group), mRNA
188
1e-44
3 ref|XM_477772.1| Oryza sativa (japonica cultivar-group), mRNA
172
7e-40
4 dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D...
155
2e-34
5 dbj|AP003737.4| Oryza sativa (japonica cultivar-group) genomic D...
155
2e-34
6 dbj|AP006052.3| Oryza sativa (japonica cultivar-group) genomic D...
155
2e-34
7 dbj|AP003830.3| Oryza sativa (japonica cultivar-group) genomic D...
131
3e-27
8 gb|AY924305.1| Triticum aestivum thionin-like peptide gene, comp...
86
1e-13
9 gb|AE008472.1| Streptococcus pneumoniae R6 section 88 of 184 of ...
46
0.11
10 gb|AC131655.4| Mus musculus BAC clone RP23-233G16 from 8, comple...
46
0.11
11 gb|AC161599.3| Mus musculus BAC clone RP23-346B16 from chromosom...
46
0.11
12 gb|BC034752.1| Homo sapiens chromosome 9 open reading frame 62, ...
44
0.45
13 emb|AL445305.11| Human DNA sequence from clone RP11-365D23 on ch...
44
0.45
14 emb|AL353615.37| Human DNA sequence from clone RP11-555H7 on chr...
44
0.45
15 gb|AC073878.7| Homo sapiens BAC clone RP11-744I24 from 7, comple...
44
0.45
16 ref|XM_938976.1| PREDICTED: Homo sapiens chromosome 9 open readi...
44
0.45
17 ref|XM_926593.1| PREDICTED: Homo sapiens chromosome 9 open readi...
44
0.45
18 gb|AC111106.10| Mus musculus chromosome 3, clone RP23-193O12, co...
42
1.8
19 gb|AC116781.9| Mus musculus chromosome 16, clone RP24-134G20, co...
42
1.8
20 gb|AC048334.21| Homo sapiens 3 BAC RP11-572C15 (Roswell Park Can...
42
1.8
21 dbj|AB012697.2| Mus musculus gene, complete cds
42
1.8
22 gb|AC027298.20|AC027298 Mus musculus 7 BAC RP23-266F22 (Roswell ...
42
1.8
23 emb|BX248129.5| Zebrafish DNA sequence from clone CH211-196M16 i...
42
1.8
24 emb|BX537133.3| Zebrafish DNA sequence from clone DKEY-90M5 in l...
42
1.8
25 gb|AC110572.13| Mus musculus chromosome 5, clone RP23-316P20, co...
42
1.8
26 gb|AC110039.13| Mus musculus chromosome 7, clone RP23-264N6, com...
42
1.8
27 emb|AL845471.7| Mouse DNA sequence from clone RP23-320N1 on chro...
42
1.8
28 emb|AL590992.12| Mouse DNA sequence from clone RP23-212C14 on ch...
42
1.8
29 gb|AC132886.18| Mus musculus chromosome 13, clone RP24-267I21, c...
40
7.1
30 gb|AC168054.4| Mus musculus BAC clone RP24-571H12 from chromosom...
40
7.1
31 gb|AC079290.12| Mus musculus chromosome 18, clone RP23-330E13, c...
40
7.1
32 gb|AC160993.5| Mus musculus BAC clone RP23-159D11 from chromosom...
40
7.1
33 gb|AC115013.18| Mus musculus chromosome 10, clone RP24-193P19, c...
40
7.1
34 gb|AC114637.9| Mus musculus chromosome 3, clone RP24-119G15, com...
40
7.1
35 gb|AC141565.3| Mus musculus BAC clone RP23-160M21 from chromosom...
40
7.1
36 gb|AC147020.2| Mus musculus BAC clone RP23-267A11 from chromosom...
40
7.1
37 gb|AC124662.10| Mus musculus chromosome 9, clone RP24-409K22, co...
40
7.1
38 gb|AC116107.10| Mus musculus chromosome 1, clone RP23-28F18, com...
40
7.1
39 gb|AC122398.2| Mus musculus BAC clone RP24-90M8 from chromosome ...
40
7.1
40 ref|XM_001001092.1| PREDICTED: Mus musculus leucine-rich repeats...
40
7.1
41 ref|XM_986937.1| PREDICTED: Mus musculus leucine-rich repeats an...
40
7.1
42 ref|XM_001001891.1| PREDICTED: Mus musculus leucine-rich repeats...
40
7.1
43 gb|AC115766.9| Mus musculus chromosome 1, clone RP23-82I24, comp...
40
7.1
44 gb|AC114821.4| Mus musculus BAC clone RP23-72K1 from chromosome ...
40
7.1
45 gb|AC132473.3| Mus musculus BAC clone RP23-114F11 from chromosom...
40
7.1
46 emb|BX957252.12| Zebrafish DNA sequence from clone CH211-106J21,...
40
7.1
47 gb|AC125398.4| Mus musculus BAC clone RP24-217G23 from chromosom...
40
7.1
48 gb|AC121797.3| Mus musculus BAC clone RP23-424C23 from chromosom...
40
7.1
49 gb|AC117196.3| Mus musculus BAC clone RP23-108H19 from 8, comple...
40
7.1
50 gb|AC099575.10| Mus musculus chromosome 14, clone RP23-83E2, com...
40
7.1
51 gb|AC117810.8| Mus musculus chromosome 18, clone RP24-571D2, com...
40
7.1
52 gb|AC109245.11| Mus musculus chromosome 1, clone RP23-344F24, co...
40
7.1
53 emb|AL137794.5| Human DNA sequence from clone RP5-1070A16 on chr...
40
7.1
54 emb|AL121761.5|HSJ122P22 Human DNA sequence from clone RP1-122P2...
40
7.1
55 gb|AC023602.5| Homo sapiens 3 BAC RP11-16N5 (Roswell Park Cancer...
40
7.1
56 ref|NM_001033439.2| Mus musculus leucine-rich repeats and calpon...
40
7.1
57 gb|AC157606.5| Mus musculus chromosome 7, clone RP23-466J2, comp...
40
7.1
58 emb|BX247869.21| Zebrafish DNA sequence from clone CH211-67D2 in...
40
7.1
59 gb|AC055733.16| Homo sapiens 3 BAC RP11-39E3 (Roswell Park Cance...
40
7.1
60 gb|AC153566.12| Mus musculus 10 BAC RP23-5H4 (Roswell Park Cance...
40
7.1
61 dbj|AK136026.1| Mus musculus in vitro fertilized eggs cDNA, RIKE...
40
7.1
62 dbj|AK143909.1| Mus musculus adult male kidney cDNA, RIKEN full-...
40
7.1
63 dbj|AK160902.1| Mus musculus 18 days pregnant adult female place...
40
7.1
64 gb|AC154225.2| Mus musculus BAC clone RP24-352F3 from chromosome...
40
7.1
65 gb|AC122024.6| Mus musculus BAC clone RP24-378K7 from chromosome...
40
7.1
66 gb|AC164979.2| Mus musculus BAC clone RP23-244J23 from chromosom...
40
7.1
67 gb|AC110527.13| Mus musculus chromosome 1, clone RP23-204H10, co...
40
7.1
68 gb|AC154600.3| Mus musculus BAC clone RP23-338O2 from chromosome...
40
7.1
69 gb|AC154621.2| Mus musculus BAC clone RP23-323P15 from chromosom...
40
7.1
70 gb|AE005672.2| Streptococcus pneumoniae TIGR4, complete genome
40
7.1
71 emb|BX005079.6| Zebrafish DNA sequence from clone CH211-176D9, c...
40
7.1
72 dbj|AK129264.1| Mus musculus mRNA for mKIAA1016 protein
40
7.1
73 gb|AC154341.2| Mus musculus BAC clone RP23-240C2 from 16, comple...
40
7.1
74 emb|Z49936.1|CEF13B10 Caenorhabditis elegans Cosmid F13B10, comp...
40
7.1
75 emb|AL136504.2|HS139I22 Homo sapiens chromosome 3 sequence from ...
40
7.1
76 gb|AC132147.4| Mus musculus BAC clone RP23-2F11 from 8, complete...
40
7.1
77 emb|CT027602.9| Mouse DNA sequence from clone RP24-359G24 on chr...
40
7.1
78 emb|Z35604.2|CEZK1058 Caenorhabditis elegans Cosmid ZK1058, comp...
40
7.1
79 emb|AL845473.7| Mouse DNA sequence from clone RP23-212E8 on chro...
40
7.1
80 emb|AL807737.12| Mouse DNA sequence from clone RP23-386N10 on ch...
40
7.1
81 gb|AC122380.4| Mus musculus BAC clone RP23-476C23 from 10, compl...
40
7.1
82 gb|AC132373.4| Mus musculus BAC clone RP23-480H8 from 1, complet...
40
7.1
83 gb|AC140553.3| Mus musculus BAC clone RP24-71M17 from 1, complet...
40
7.1
84 gb|AC135673.5| Mus musculus BAC clone RP24-279A17 from 16, compl...
40
7.1
85 emb|AL844168.5| Mouse DNA sequence from clone RP23-413G9 on chro...
40
7.1
86 gb|AF010583.1|AF010583 Oryza sativa 2-oxoglutarate/malate transl...
40
7.1
87 gb|AC173341.1| Mus musculus BAC clone RP24-332P6 from chromosome...
40
7.1
88 emb|AL732321.18| Mouse DNA sequence from clone RP23-167N17 on ch...
40
7.1
89 emb|AL670951.6| Mouse DNA sequence from clone RP23-6N18 on chrom...
40
7.1
90 emb|AJ403665.1|MMU403665 M.musculus DNA for GFAP-binding fragmen...
40
7.1
>dbj|AP008213.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 155 bits (78), Expect = 2e-34
Identities = 147/170 (86%)
Strand = Plus / Plus
Query: 99 atcatgtgcctgctcatattgagcatcgctgttcactcgaccaccgcagcacagtgtggc 158
|||||||||||| |||| |||||| || |||| |||| ||||||| |||||||| |||
Sbjct: 14249821 atcatgtgcctggtcatcttgagcctcactgtcgactccgccaccgcggcacagtgcggc 14249880
Query: 159 tgctgcgtaagcgcccgggcaaaagcatgttgctttgcttgtattgccgcaggtggctcc 218
|||||| || | | ||||||||||||||||| |||| ||||||||| || |||||||||
Sbjct: 14249881 tgctgcatatcctctcgggcaaaagcatgttgttttggttgtattgctgctggtggctcc 14249940
Query: 219 gacacaatatgcaagaacacttgttgtttcccctgtattcttgccgattc 268
||| |||| ||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 14249941 gactcaatctgcaagaacacttgttgtttcccatgtattctggccgattc 14249990
Score = 147 bits (74), Expect = 4e-32
Identities = 146/170 (85%)
Strand = Plus / Plus
Query: 99 atcatgtgcctgctcatattgagcatcgctgttcactcgaccaccgcagcacagtgtggc 158
|||||||||||| |||| |||||| || |||| |||| ||||||| |||||||| |||
Sbjct: 14238678 atcatgtgcctggtcatcttgagcctcactgtcgactccgccaccgcggcacagtgcggc 14238737
Query: 159 tgctgcgtaagcgcccgggcaaaagcatgttgctttgcttgtattgccgcaggtggctcc 218
|||||| || | | ||||||||||||||||| |||| ||||||||| || |||||||||
Sbjct: 14238738 tgctgcatatcctctcgggcaaaagcatgttgttttggttgtattgctgctggtggctcc 14238797
Query: 219 gacacaatatgcaagaacacttgttgtttcccctgtattcttgccgattc 268
||| || | ||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 14238798 gactcagtctgcaagaacacttgttgtttcccatgtattctggccgattc 14238847
Score = 131 bits (66), Expect = 3e-27
Identities = 114/130 (87%)
Strand = Plus / Plus
Query: 139 ccaccgcagcacagtgtggctgctgcgtaagcgcccgggcaaaagcatgttgctttgctt 198
|||||||||||||||| ||||||||| || | | || |||||||||||||| |||| ||
Sbjct: 14064588 ccaccgcagcacagtgcggctgctgcatatcctctcgagcaaaagcatgttgttttggtt 14064647
Query: 199 gtattgccgcaggtggctccgacacaatatgcaagaacacttgttgtttcccctgtattc 258
||||||| || |||||||||||| || | ||||||||||||||||||||||| |||||||
Sbjct: 14064648 gtattgctgctggtggctccgactcagtctgcaagaacacttgttgtttcccatgtattc 14064707
Query: 259 ttgccgattc 268
| ||||||||
Sbjct: 14064708 tggccgattc 14064717
Score = 127 bits (64), Expect = 4e-26
Identities = 157/188 (83%)
Strand = Plus / Plus
Query: 81 actaccaccttgaaggcaatcatgtgcctgctcatattgagcatcgctgttcactcgacc 140
|||||||| | || || |||||| |||||| |||| |||||| || |||| |||| ||
Sbjct: 14053091 actaccacttcgatggtaatcatttgcctggtcatcttgagcctcactgtcgactccgcc 14053150
Query: 141 accgcagcacagtgtggctgctgcgtaagcgcccgggcaaaagcatgttgctttgcttgt 200
|||||||||||||| ||||||||| || | | ||||||||||||||||| ||| ||||
Sbjct: 14053151 accgcagcacagtgcggctgctgcatatcctctcgggcaaaagcatgttgtgttggttgt 14053210
Query: 201 attgccgcaggtggctccgacacaatatgcaagaacacttgttgtttcccctgtattctt 260
||||| || ||||||||| || || | ||||||||||||||| ||||||| ||||||||
Sbjct: 14053211 attgctgctggtggctccaactcagtctgcaagaacacttgtcgtttcccatgtattctg 14053270
Query: 261 gccgattc 268
||||||||
Sbjct: 14053271 gccgattc 14053278
Score = 117 bits (59), Expect = 4e-23
Identities = 86/95 (90%)
Strand = Plus / Plus
Query: 174 cgggcaaaagcatgttgctttgcttgtattgccgcaggtggctccgacacaatatgcaag 233
||||||||||||||||| |||| ||||||||| || |||||||||||| || | ||||||
Sbjct: 14147559 cgggcaaaagcatgttgttttggttgtattgctgctggtggctccgactcagtctgcaag 14147618
Query: 234 aacacttgttgtttcccctgtattcttgccgattc 268
||||||||||||||||| |||||||| ||||||||
Sbjct: 14147619 aacacttgttgtttcccatgtattctggccgattc 14147653
Score = 107 bits (54), Expect = 4e-20
Identities = 141/170 (82%)
Strand = Plus / Plus
Query: 99 atcatgtgcctgctcatattgagcatcgctgttcactcgaccaccgcagcacagtgtggc 158
|||||||||||| |||| |||||| || |||| |||| ||||||| |||||||| |||
Sbjct: 14124962 atcatgtgcctggtcatcttgagcctcactgtcgactccgccaccgcggcacagtgcggc 14125021
Query: 159 tgctgcgtaagcgcccgggcaaaagcatgttgctttgcttgtattgccgcaggtggctcc 218
|||||| || | | ||||||||||||||| || | ||||| ||| || |||||||||
Sbjct: 14125022 tgctgcatatcctcttaggcaaaagcatgttgtttcggttgtactgctgctggtggctcc 14125081
Query: 219 gacacaatatgcaagaacacttgttgtttcccctgtattcttgccgattc 268
||| || | | ||||||||||||||||||||| |||||||| ||||||||
Sbjct: 14125082 gactcagtctacaagaacacttgttgtttcccatgtattctggccgattc 14125131
Score = 60.0 bits (30), Expect = 8e-06
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 382 ttgcttcaagctatggtcaagttatgttaatgtgtacctacaataagttgttga 435
|||||||||| ||||| |||||||||||||||| || || |||||| |||||||
Sbjct: 14250351 ttgcttcaagttatggccaagttatgttaatgtttatctccaataaattgttga 14250404
Score = 60.0 bits (30), Expect = 8e-06
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 382 ttgcttcaagctatggtcaagttatgttaatgtgtacctacaataagttgttga 435
|||||||||| ||||| |||||||||||||||| || || |||||| |||||||
Sbjct: 14148014 ttgcttcaagttatggccaagttatgttaatgtttatctccaataaattgttga 14148067
Score = 52.0 bits (26), Expect = 0.002
Identities = 48/54 (88%), Gaps = 1/54 (1%)
Strand = Plus / Plus
Query: 382 ttgcttcaagctatggtcaagttatgttaatgtgtacctacaataagttgttga 435
|||||||||| ||||| |||||||||||||||| || || |||||| |||||||
Sbjct: 14125515 ttgcttcaagttatggccaagttatgttaatgt-tatcttcaataaattgttga 14125567
Score = 52.0 bits (26), Expect = 0.002
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 382 ttgcttcaagctatggtcaagttatgttaatgtgtacctacaataagttgttga 435
|||||||||| ||||| | |||||||||||||| || || |||||| |||||||
Sbjct: 14065100 ttgcttcaagttatggcctagttatgttaatgtttatctccaataaattgttga 14065153
Score = 50.1 bits (25), Expect = 0.007
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 382 ttgcttcaagctatggtcaagttatgttaatgt 414
|||||||||| ||||| ||||||||||||||||
Sbjct: 14239219 ttgcttcaagttatggccaagttatgttaatgt 14239251
Score = 48.1 bits (24), Expect = 0.029
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 270 gttgttgctaagatggaagaaatgggag 297
||||||||||||||||| ||||||||||
Sbjct: 14250239 gttgttgctaagatggacgaaatgggag 14250266
Score = 48.1 bits (24), Expect = 0.029
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 270 gttgttgctaagatggaagaaatgggag 297
||||||||||||||||| ||||||||||
Sbjct: 14239080 gttgttgctaagatggacgaaatgggag 14239107
Score = 48.1 bits (24), Expect = 0.029
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 270 gttgttgctaagatggaagaaatgggag 297
||||||||||||||||| ||||||||||
Sbjct: 14147902 gttgttgctaagatggacgaaatgggag 14147929
Score = 48.1 bits (24), Expect = 0.029
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 270 gttgttgctaagatggaagaaatgggag 297
||||||||||||||||| ||||||||||
Sbjct: 14125376 gttgttgctaagatggacgaaatgggag 14125403
Score = 48.1 bits (24), Expect = 0.029
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 270 gttgttgctaagatggaagaaatgggag 297
||||||||||||||||| ||||||||||
Sbjct: 14064961 gttgttgctaagatggacgaaatgggag 14064988
Score = 48.1 bits (24), Expect = 0.029
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 270 gttgttgctaagatggaagaaatgggag 297
||||||||||||||||| ||||||||||
Sbjct: 14053523 gttgttgctaagatggacgaaatgggag 14053550
Score = 46.1 bits (23), Expect = 0.11
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 382 ttgcttcaagctatggtcaagttatgttaat 412
|||||||||| ||||| ||||||||||||||
Sbjct: 14054672 ttgcttcaagttatggccaagttatgttaat 14054702
Score = 44.1 bits (22), Expect = 0.45
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 99 atcatgtgcctgctcatattgagcatcgctgttcactcgaccaccgcagcacagtgtggc 158
|||||||| ||| |||| |||||| || |||| |||| ||||||| |||||||||||
Sbjct: 14136262 atcatgtggctggtcatcttgagcctcactgtcgactccgccaccgcgacacagtgtggc 14136321
Query: 159 tgctgc 164
||||||
Sbjct: 14136322 tgctgc 14136327
Score = 40.1 bits (20), Expect = 7.1
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 274 ttgctaagatggaagaaatgggag 297
||||||||||||| ||||||||||
Sbjct: 14239111 ttgctaagatggacgaaatgggag 14239134
Score = 40.1 bits (20), Expect = 7.1
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 274 ttgctaagatggaagaaatgggag 297
||||||||||||| ||||||||||
Sbjct: 14125407 ttgctaagatggacgaaatgggag 14125430
Score = 40.1 bits (20), Expect = 7.1
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 274 ttgctaagatggaagaaatgggag 297
||||||||||||| ||||||||||
Sbjct: 14064992 ttgctaagatggacgaaatgggag 14065015
Score = 40.1 bits (20), Expect = 7.1
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 274 ttgctaagatggaagaaatgggag 297
||||||||||||| ||||||||||
Sbjct: 14053554 ttgctaagatggatgaaatgggag 14053577
>dbj|AP006052.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OSJNBa0067K15
Length = 160162
Score = 155 bits (78), Expect = 2e-34
Identities = 147/170 (86%)
Strand = Plus / Plus
Query: 99 atcatgtgcctgctcatattgagcatcgctgttcactcgaccaccgcagcacagtgtggc 158
|||||||||||| |||| |||||| || |||| |||| ||||||| |||||||| |||
Sbjct: 134702 atcatgtgcctggtcatcttgagcctcactgtcgactccgccaccgcggcacagtgcggc 134761
Query: 159 tgctgcgtaagcgcccgggcaaaagcatgttgctttgcttgtattgccgcaggtggctcc 218
|||||| || | | ||||||||||||||||| |||| ||||||||| || |||||||||
Sbjct: 134762 tgctgcatatcctctcgggcaaaagcatgttgttttggttgtattgctgctggtggctcc 134821
Query: 219 gacacaatatgcaagaacacttgttgtttcccctgtattcttgccgattc 268
||| |||| ||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 134822 gactcaatctgcaagaacacttgttgtttcccatgtattctggccgattc 134871
Score = 147 bits (74), Expect = 4e-32
Identities = 146/170 (85%)
Strand = Plus / Plus
Query: 99 atcatgtgcctgctcatattgagcatcgctgttcactcgaccaccgcagcacagtgtggc 158
|||||||||||| |||| |||||| || |||| |||| ||||||| |||||||| |||
Sbjct: 123559 atcatgtgcctggtcatcttgagcctcactgtcgactccgccaccgcggcacagtgcggc 123618
Query: 159 tgctgcgtaagcgcccgggcaaaagcatgttgctttgcttgtattgccgcaggtggctcc 218
|||||| || | | ||||||||||||||||| |||| ||||||||| || |||||||||
Sbjct: 123619 tgctgcatatcctctcgggcaaaagcatgttgttttggttgtattgctgctggtggctcc 123678
Query: 219 gacacaatatgcaagaacacttgttgtttcccctgtattcttgccgattc 268
||| || | ||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 123679 gactcagtctgcaagaacacttgttgtttcccatgtattctggccgattc 123728
Score = 117 bits (59), Expect = 4e-23
Identities = 86/95 (90%)
Strand = Plus / Plus
Query: 174 cgggcaaaagcatgttgctttgcttgtattgccgcaggtggctccgacacaatatgcaag 233
||||||||||||||||| |||| ||||||||| || |||||||||||| || | ||||||
Sbjct: 32440 cgggcaaaagcatgttgttttggttgtattgctgctggtggctccgactcagtctgcaag 32499
Query: 234 aacacttgttgtttcccctgtattcttgccgattc 268
||||||||||||||||| |||||||| ||||||||
Sbjct: 32500 aacacttgttgtttcccatgtattctggccgattc 32534
Score = 107 bits (54), Expect = 4e-20
Identities = 141/170 (82%)
Strand = Plus / Plus
Query: 99 atcatgtgcctgctcatattgagcatcgctgttcactcgaccaccgcagcacagtgtggc 158
|||||||||||| |||| |||||| || |||| |||| ||||||| |||||||| |||
Sbjct: 9843 atcatgtgcctggtcatcttgagcctcactgtcgactccgccaccgcggcacagtgcggc 9902
Query: 159 tgctgcgtaagcgcccgggcaaaagcatgttgctttgcttgtattgccgcaggtggctcc 218
|||||| || | | ||||||||||||||| || | ||||| ||| || |||||||||
Sbjct: 9903 tgctgcatatcctcttaggcaaaagcatgttgtttcggttgtactgctgctggtggctcc 9962
Query: 219 gacacaatatgcaagaacacttgttgtttcccctgtattcttgccgattc 268
||| || | | ||||||||||||||||||||| |||||||| ||||||||
Sbjct: 9963 gactcagtctacaagaacacttgttgtttcccatgtattctggccgattc 10012
Score = 60.0 bits (30), Expect = 8e-06
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 382 ttgcttcaagctatggtcaagttatgttaatgtgtacctacaataagttgttga 435
|||||||||| ||||| |||||||||||||||| || || |||||| |||||||
Sbjct: 135232 ttgcttcaagttatggccaagttatgttaatgtttatctccaataaattgttga 135285
Score = 60.0 bits (30), Expect = 8e-06
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 382 ttgcttcaagctatggtcaagttatgttaatgtgtacctacaataagttgttga 435
|||||||||| ||||| |||||||||||||||| || || |||||| |||||||
Sbjct: 32895 ttgcttcaagttatggccaagttatgttaatgtttatctccaataaattgttga 32948
Score = 52.0 bits (26), Expect = 0.002
Identities = 48/54 (88%), Gaps = 1/54 (1%)
Strand = Plus / Plus
Query: 382 ttgcttcaagctatggtcaagttatgttaatgtgtacctacaataagttgttga 435
|||||||||| ||||| |||||||||||||||| || || |||||| |||||||
Sbjct: 10396 ttgcttcaagttatggccaagttatgttaatgt-tatcttcaataaattgttga 10448
Score = 50.1 bits (25), Expect = 0.007
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 382 ttgcttcaagctatggtcaagttatgttaatgt 414
|||||||||| ||||| ||||||||||||||||
Sbjct: 124100 ttgcttcaagttatggccaagttatgttaatgt 124132
Score = 48.1 bits (24), Expect = 0.029
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 270 gttgttgctaagatggaagaaatgggag 297
||||||||||||||||| ||||||||||
Sbjct: 135120 gttgttgctaagatggacgaaatgggag 135147
Score = 48.1 bits (24), Expect = 0.029
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 270 gttgttgctaagatggaagaaatgggag 297
||||||||||||||||| ||||||||||
Sbjct: 123961 gttgttgctaagatggacgaaatgggag 123988
Score = 48.1 bits (24), Expect = 0.029
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 270 gttgttgctaagatggaagaaatgggag 297
||||||||||||||||| ||||||||||
Sbjct: 32783 gttgttgctaagatggacgaaatgggag 32810
Score = 48.1 bits (24), Expect = 0.029
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 270 gttgttgctaagatggaagaaatgggag 297
||||||||||||||||| ||||||||||
Sbjct: 10257 gttgttgctaagatggacgaaatgggag 10284
Score = 44.1 bits (22), Expect = 0.45
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 99 atcatgtgcctgctcatattgagcatcgctgttcactcgaccaccgcagcacagtgtggc 158
|||||||| ||| |||| |||||| || |||| |||| ||||||| |||||||||||
Sbjct: 21143 atcatgtggctggtcatcttgagcctcactgtcgactccgccaccgcgacacagtgtggc 21202
Query: 159 tgctgc 164
||||||
Sbjct: 21203 tgctgc 21208
Score = 40.1 bits (20), Expect = 7.1
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 274 ttgctaagatggaagaaatgggag 297
||||||||||||| ||||||||||
Sbjct: 123992 ttgctaagatggacgaaatgggag 124015
Score = 40.1 bits (20), Expect = 7.1
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 274 ttgctaagatggaagaaatgggag 297
||||||||||||| ||||||||||
Sbjct: 10288 ttgctaagatggacgaaatgggag 10311
>dbj|AP003830.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1423_A11
Length = 98377
Score = 131 bits (66), Expect = 3e-27
Identities = 114/130 (87%)
Strand = Plus / Plus
Query: 139 ccaccgcagcacagtgtggctgctgcgtaagcgcccgggcaaaagcatgttgctttgctt 198
|||||||||||||||| ||||||||| || | | || |||||||||||||| |||| ||
Sbjct: 40547 ccaccgcagcacagtgcggctgctgcatatcctctcgagcaaaagcatgttgttttggtt 40606
Query: 199 gtattgccgcaggtggctccgacacaatatgcaagaacacttgttgtttcccctgtattc 258
||||||| || |||||||||||| || | ||||||||||||||||||||||| |||||||
Sbjct: 40607 gtattgctgctggtggctccgactcagtctgcaagaacacttgttgtttcccatgtattc 40666
Query: 259 ttgccgattc 268
| ||||||||
Sbjct: 40667 tggccgattc 40676
Score = 127 bits (64), Expect = 4e-26
Identities = 157/188 (83%)
Strand = Plus / Plus
Query: 81 actaccaccttgaaggcaatcatgtgcctgctcatattgagcatcgctgttcactcgacc 140
|||||||| | || || |||||| |||||| |||| |||||| || |||| |||| ||
Sbjct: 29050 actaccacttcgatggtaatcatttgcctggtcatcttgagcctcactgtcgactccgcc 29109
Query: 141 accgcagcacagtgtggctgctgcgtaagcgcccgggcaaaagcatgttgctttgcttgt 200
|||||||||||||| ||||||||| || | | ||||||||||||||||| ||| ||||
Sbjct: 29110 accgcagcacagtgcggctgctgcatatcctctcgggcaaaagcatgttgtgttggttgt 29169
Query: 201 attgccgcaggtggctccgacacaatatgcaagaacacttgttgtttcccctgtattctt 260
||||| || ||||||||| || || | ||||||||||||||| ||||||| ||||||||
Sbjct: 29170 attgctgctggtggctccaactcagtctgcaagaacacttgtcgtttcccatgtattctg 29229
Query: 261 gccgattc 268
||||||||
Sbjct: 29230 gccgattc 29237
Score = 52.0 bits (26), Expect = 0.002
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 382 ttgcttcaagctatggtcaagttatgttaatgtgtacctacaataagttgttga 435
|||||||||| ||||| | |||||||||||||| || || |||||| |||||||
Sbjct: 41059 ttgcttcaagttatggcctagttatgttaatgtttatctccaataaattgttga 41112
Score = 48.1 bits (24), Expect = 0.029
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 270 gttgttgctaagatggaagaaatgggag 297
||||||||||||||||| ||||||||||
Sbjct: 40920 gttgttgctaagatggacgaaatgggag 40947
Score = 48.1 bits (24), Expect = 0.029
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 270 gttgttgctaagatggaagaaatgggag 297
||||||||||||||||| ||||||||||
Sbjct: 29482 gttgttgctaagatggacgaaatgggag 29509
Score = 46.1 bits (23), Expect = 0.11
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 382 ttgcttcaagctatggtcaagttatgttaat 412
|||||||||| ||||| ||||||||||||||
Sbjct: 30631 ttgcttcaagttatggccaagttatgttaat 30661
Score = 40.1 bits (20), Expect = 7.1
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 274 ttgctaagatggaagaaatgggag 297
||||||||||||| ||||||||||
Sbjct: 40951 ttgctaagatggacgaaatgggag 40974
Score = 40.1 bits (20), Expect = 7.1
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 274 ttgctaagatggaagaaatgggag 297
||||||||||||| ||||||||||
Sbjct: 29513 ttgctaagatggatgaaatgggag 29536
>emb|AL445305.11 | Human DNA sequence from clone RP11-365D23 on chromosome 1 Contains an
adaptor-related protein complex 3 pseudogene, a keratin 18
(KRT18) pseudogene, a novel pseudogene, a
ubiquitin-conjugating enzyme E2 variant 1 (UBE2V1)
pseudogene, the 5' end of the CENPF gene for centromere
protein F 350/400ka (mitosin), the 5' end of the PTPN14
gene for protein tyrosine phosphatase, non-receptor type 14
protein and a CpG island, complete sequence
Length = 193256
Score = 44.1 bits (22), Expect = 0.45
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 479 tacatatatgttatgcatttgt 500
||||||||||||||||||||||
Sbjct: 123173 tacatatatgttatgcatttgt 123152
>emb|AL670951.6 | Mouse DNA sequence from clone RP23-6N18 on chromosome 2, complete
sequence
Length = 207571
Score = 40.1 bits (20), Expect = 7.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 492 tgcatttgtgcatgtgtgtg 511
||||||||||||||||||||
Sbjct: 62420 tgcatttgtgcatgtgtgtg 62439
Score = 40.1 bits (20), Expect = 7.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 492 tgcatttgtgcatgtgtgtg 511
||||||||||||||||||||
Sbjct: 62364 tgcatttgtgcatgtgtgtg 62383
Score = 40.1 bits (20), Expect = 7.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 492 tgcatttgtgcatgtgtgtg 511
||||||||||||||||||||
Sbjct: 62308 tgcatttgtgcatgtgtgtg 62327
Score = 40.1 bits (20), Expect = 7.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 492 tgcatttgtgcatgtgtgtg 511
||||||||||||||||||||
Sbjct: 62290 tgcatttgtgcatgtgtgtg 62309
Score = 40.1 bits (20), Expect = 7.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 492 tgcatttgtgcatgtgtgtg 511
||||||||||||||||||||
Sbjct: 62234 tgcatttgtgcatgtgtgtg 62253
Score = 40.1 bits (20), Expect = 7.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 492 tgcatttgtgcatgtgtgtg 511
||||||||||||||||||||
Sbjct: 62178 tgcatttgtgcatgtgtgtg 62197
>emb|AJ403665.1 |MMU403665 M.musculus DNA for GFAP-binding fragment GFAPE23
Length = 390
Score = 40.1 bits (20), Expect = 7.1
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 239 ttgttgtttcccctgtattc 258
||||||||||||||||||||
Sbjct: 198 ttgttgtttcccctgtattc 179
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,871,522
Number of Sequences: 3902068
Number of extensions: 5871522
Number of successful extensions: 168162
Number of sequences better than 10.0: 90
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 167659
Number of HSP's gapped (non-prelim): 500
length of query: 522
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 499
effective length of database: 17,143,297,704
effective search space: 8554505554296
effective search space used: 8554505554296
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)