ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd21m12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY236227.1| Oryza sativa (indica cultivar-group) alanine amin... 371 1e-99
2dbj|AK067732.1| Oryza sativa (japonica cultivar-group) cDNA clon... 371 1e-99
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 242 7e-61
4dbj|AP004342.5| Oryza sativa (japonica cultivar-group) genomic D... 242 7e-61
5dbj|AP003759.2| Oryza sativa (japonica cultivar-group) genomic D... 242 7e-61
6dbj|AK060835.1| Oryza sativa (japonica cultivar-group) cDNA clon... 214 2e-52
7gb|DQ118094.1| Vitis labrusca AlaT1 mRNA, complete cds 58 2e-05
8gb|U31975.1|CRU31975 Chlamydomonas reinhardtii alanine aminotran... 54 4e-04
9gb|DQ118095.1| Vitis vinifera AlaT1 mRNA, complete cds 50 0.006
10ref|XM_587589.2| PREDICTED: Bos taurus similar to kyphoscoliosis... 44 0.34
11ref|NM_102180.2| Arabidopsis thaliana GGT1 (ALANINE-2-OXOGLUTARA... 42 1.3
12ref|NM_001036006.1| Arabidopsis thaliana GGT1 (ALANINE-2-OXOGLUT... 42 1.3
13ref|XM_515293.1| PREDICTED: Pan troglodytes a disintegrin and me... 42 1.3
14gb|AY150373.1| Arabidopsis thaliana putative alanine aminotransf... 42 1.3
15gb|AF360195.1| Arabidopsis thaliana putative alanine aminotransf... 42 1.3
16gb|AY058868.1| Arabidopsis thaliana At1g23310/F26F24_4 mRNA, com... 42 1.3
17gb|AY056379.1| Arabidopsis thaliana At1g23310/F26F24_4 mRNA, com... 42 1.3
18emb|BX814587.1|CNS0AAUD Arabidopsis thaliana Full-length cDNA Co... 42 1.3
19gb|AC080162.7| Homo sapiens BAC clone RP11-400L8 from 2, complet... 42 1.3
20gb|AF479639.1| Arabidopsis thaliana glutamate:glyoxylate aminotr... 42 1.3
21gb|BT002643.1| Arabidopsis thaliana At1g23310/F26F24_4 gene, com... 42 1.3
22gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome 42 1.3
23ref|XM_503184.1| Yarrowia lipolytica CLIB122, YALI0D23287g predi... 40 5.3
24emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB 40 5.3
25emb|BX571691.13| Zebrafish DNA sequence from clone CH211-142G20 ... 40 5.3
26ref|XM_681871.1| PREDICTED: Danio rerio similar to Nedd4-binding... 40 5.3
27emb|AJ299420.1|CRU299420 Capsella rubella ORF1 and ORF2 DNA for ... 40 5.3
28emb|AJ328439.1|HSA328439 Homo sapiens genomic sequence surroundi... 40 5.3
29gb|AY106411.1| Zea mays PCO106344 mRNA sequence 40 5.3
30gb|AC005757.1|AC005757 Homo sapiens chromosome 19, cosmid R32611... 40 5.3
31emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB1... 40 5.3 
>gb|AY236227.1| Oryza sativa (indica cultivar-group) alanine aminotransferase mRNA,
           complete cds
          Length = 1558

 Score =  371 bits (187), Expect = 1e-99
 Identities = 280/311 (90%)
 Strand = Plus / Plus

                                                                       
Query: 85  gggaggaaggcgctggactacgaggagctcaacgagaacgtcaagaaggtgcagtacgcc 144
           ||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||| 
Sbjct: 64  gggaggaagccgctggactacgaggagctgaacgagaacgtgaagaaggtgcagtacgcg 123

                                                                       
Query: 145 gtgcgcggcgagctctacctccgcgcatccgagctccagaaggagggcaagaggatcatc 204
           ||||| || ||||| ||||| ||||| ||||||||||||||||||||||||| |||||||
Sbjct: 124 gtgcggggggagctgtacctgcgcgcctccgagctccagaaggagggcaagaagatcatc 183

                                                                       
Query: 205 ttcaccaacgtcggcaacccgcacgccctcggacagaagccactcaccttcccacgccag 264
           |||||||||||||||||||| ||||| ||||| |||||||| ||||||||||| ||||||
Sbjct: 184 ttcaccaacgtcggcaacccacacgcgctcggccagaagccgctcaccttcccccgccag 243

                                                                       
Query: 265 gtggtggcgctctgccaggctcccttcctcctcgatgatcccaacgtcggtctcatcttc 324
           || |||||||| |||||||| |||||||| |||||||||||||||||||| || ||||||
Sbjct: 244 gttgtggcgctgtgccaggcccccttcctgctcgatgatcccaacgtcggccttatcttc 303

                                                                       
Query: 325 cccgccgatgccatcgcaagggccaagcactacctctccctcgcacccggcggcttaggt 384
           |||||||| ||||||||  ||||||||||||||||| || | |||||||| ||  |||||
Sbjct: 304 cccgccgacgccatcgcgcgggccaagcactacctcgccatggcacccggtggactaggt 363

                      
Query: 385 gcgtacagtga 395
           || ||||||||
Sbjct: 364 gcttacagtga 374
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>dbj|AK067732.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013118J02, full
           insert sequence
          Length = 1970

 Score =  371 bits (187), Expect = 1e-99
 Identities = 280/311 (90%)
 Strand = Plus / Plus

                                                                       
Query: 85  gggaggaaggcgctggactacgaggagctcaacgagaacgtcaagaaggtgcagtacgcc 144
           ||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||| 
Sbjct: 113 gggaggaagccgctggactacgaggagctgaacgagaacgtgaagaaggtgcagtacgcg 172

                                                                       
Query: 145 gtgcgcggcgagctctacctccgcgcatccgagctccagaaggagggcaagaggatcatc 204
           ||||| || ||||| ||||| ||||| ||||||||||||||||||||||||| |||||||
Sbjct: 173 gtgcggggggagctgtacctgcgcgcctccgagctccagaaggagggcaagaagatcatc 232

                                                                       
Query: 205 ttcaccaacgtcggcaacccgcacgccctcggacagaagccactcaccttcccacgccag 264
           |||||||||||||||||||| ||||| ||||| |||||||| ||||||||||| ||||||
Sbjct: 233 ttcaccaacgtcggcaacccacacgcgctcggccagaagccgctcaccttcccccgccag 292

                                                                       
Query: 265 gtggtggcgctctgccaggctcccttcctcctcgatgatcccaacgtcggtctcatcttc 324
           || |||||||| |||||||| |||||||| |||||||||||||||||||| || ||||||
Sbjct: 293 gttgtggcgctgtgccaggcccccttcctgctcgatgatcccaacgtcggccttatcttc 352

                                                                       
Query: 325 cccgccgatgccatcgcaagggccaagcactacctctccctcgcacccggcggcttaggt 384
           |||||||| ||||||||  ||||||||||||||||| || | |||||||| ||  |||||
Sbjct: 353 cccgccgacgccatcgcgcgggccaagcactacctcgccatggcacccggtggactaggt 412

                      
Query: 385 gcgtacagtga 395
           || ||||||||
Sbjct: 413 gcttacagtga 423
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
              complete sequence
          Length = 29644043

 Score =  242 bits (122), Expect = 7e-61
 Identities = 167/182 (91%)
 Strand = Plus / Minus

                                                                          
Query: 85     gggaggaaggcgctggactacgaggagctcaacgagaacgtcaagaaggtgcagtacgcc 144
              ||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||| 
Sbjct: 450138 gggaggaagccgctggactacgaggagctgaacgagaacgtgaagaaggtgcagtacgcg 450079

                                                                          
Query: 145    gtgcgcggcgagctctacctccgcgcatccgagctccagaaggagggcaagaggatcatc 204
              ||||| || ||||| ||||| ||||| ||||||||||||||||||||||||| |||||||
Sbjct: 450078 gtgcggggggagctgtacctgcgcgcctccgagctccagaaggagggcaagaagatcatc 450019

                                                                          
Query: 205    ttcaccaacgtcggcaacccgcacgccctcggacagaagccactcaccttcccacgccag 264
              |||||||||||||||||||| ||||| ||||| |||||||| ||||||||||| ||||||
Sbjct: 450018 ttcaccaacgtcggcaacccacacgcgctcggccagaagccgctcaccttcccccgccag 449959

                
Query: 265    gt 266
              ||
Sbjct: 449958 gt 449957



 Score =  129 bits (65), Expect = 7e-27
 Identities = 101/113 (89%)
 Strand = Plus / Minus

                                                                          
Query: 262    caggtggtggcgctctgccaggctcccttcctcctcgatgatcccaacgtcggtctcatc 321
              ||||| |||||||| |||||||| |||||||| |||||||||||||||||||| || |||
Sbjct: 449877 caggttgtggcgctgtgccaggcccccttcctgctcgatgatcccaacgtcggccttatc 449818

                                                                   
Query: 322    ttccccgccgatgccatcgcaagggccaagcactacctctccctcgcacccgg 374
              ||||||||||| ||||||||  ||||||||||||||||| || | ||||||||
Sbjct: 449817 ttccccgccgacgccatcgcgcgggccaagcactacctcgccatggcacccgg 449765
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>dbj|AP004342.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0585H11
          Length = 149371

 Score =  242 bits (122), Expect = 7e-61
 Identities = 167/182 (91%)
 Strand = Plus / Minus

                                                                         
Query: 85    gggaggaaggcgctggactacgaggagctcaacgagaacgtcaagaaggtgcagtacgcc 144
             ||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||| 
Sbjct: 52302 gggaggaagccgctggactacgaggagctgaacgagaacgtgaagaaggtgcagtacgcg 52243

                                                                         
Query: 145   gtgcgcggcgagctctacctccgcgcatccgagctccagaaggagggcaagaggatcatc 204
             ||||| || ||||| ||||| ||||| ||||||||||||||||||||||||| |||||||
Sbjct: 52242 gtgcggggggagctgtacctgcgcgcctccgagctccagaaggagggcaagaagatcatc 52183

                                                                         
Query: 205   ttcaccaacgtcggcaacccgcacgccctcggacagaagccactcaccttcccacgccag 264
             |||||||||||||||||||| ||||| ||||| |||||||| ||||||||||| ||||||
Sbjct: 52182 ttcaccaacgtcggcaacccacacgcgctcggccagaagccgctcaccttcccccgccag 52123

               
Query: 265   gt 266
             ||
Sbjct: 52122 gt 52121



 Score =  129 bits (65), Expect = 7e-27
 Identities = 101/113 (89%)
 Strand = Plus / Minus

                                                                         
Query: 262   caggtggtggcgctctgccaggctcccttcctcctcgatgatcccaacgtcggtctcatc 321
             ||||| |||||||| |||||||| |||||||| |||||||||||||||||||| || |||
Sbjct: 52041 caggttgtggcgctgtgccaggcccccttcctgctcgatgatcccaacgtcggccttatc 51982

                                                                  
Query: 322   ttccccgccgatgccatcgcaagggccaagcactacctctccctcgcacccgg 374
             ||||||||||| ||||||||  ||||||||||||||||| || | ||||||||
Sbjct: 51981 ttccccgccgacgccatcgcgcgggccaagcactacctcgccatggcacccgg 51929
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>dbj|AP003759.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
            clone:OJ1567_G09
          Length = 121388

 Score =  242 bits (122), Expect = 7e-61
 Identities = 167/182 (91%)
 Strand = Plus / Minus

                                                                        
Query: 85   gggaggaaggcgctggactacgaggagctcaacgagaacgtcaagaaggtgcagtacgcc 144
            ||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||| 
Sbjct: 4050 gggaggaagccgctggactacgaggagctgaacgagaacgtgaagaaggtgcagtacgcg 3991

                                                                        
Query: 145  gtgcgcggcgagctctacctccgcgcatccgagctccagaaggagggcaagaggatcatc 204
            ||||| || ||||| ||||| ||||| ||||||||||||||||||||||||| |||||||
Sbjct: 3990 gtgcggggggagctgtacctgcgcgcctccgagctccagaaggagggcaagaagatcatc 3931

                                                                        
Query: 205  ttcaccaacgtcggcaacccgcacgccctcggacagaagccactcaccttcccacgccag 264
            |||||||||||||||||||| ||||| ||||| |||||||| ||||||||||| ||||||
Sbjct: 3930 ttcaccaacgtcggcaacccacacgcgctcggccagaagccgctcaccttcccccgccag 3871

              
Query: 265  gt 266
            ||
Sbjct: 3870 gt 3869



 Score =  129 bits (65), Expect = 7e-27
 Identities = 101/113 (89%)
 Strand = Plus / Minus

                                                                        
Query: 262  caggtggtggcgctctgccaggctcccttcctcctcgatgatcccaacgtcggtctcatc 321
            ||||| |||||||| |||||||| |||||||| |||||||||||||||||||| || |||
Sbjct: 3789 caggttgtggcgctgtgccaggcccccttcctgctcgatgatcccaacgtcggccttatc 3730

                                                                 
Query: 322  ttccccgccgatgccatcgcaagggccaagcactacctctccctcgcacccgg 374
            ||||||||||| ||||||||  ||||||||||||||||| || | ||||||||
Sbjct: 3729 ttccccgccgacgccatcgcgcgggccaagcactacctcgccatggcacccgg 3677
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>dbj|AK060835.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-C09, full
           insert sequence
          Length = 1581

 Score =  214 bits (108), Expect = 2e-52
 Identities = 171/192 (89%)
 Strand = Plus / Plus

                                                                       
Query: 204 cttcaccaacgtcggcaacccgcacgccctcggacagaagccactcaccttcccacgcca 263
           ||||||||||||||||||||| ||||| ||||| |||||||| ||||||||||| |||||
Sbjct: 1   cttcaccaacgtcggcaacccacacgcgctcggccagaagccgctcaccttcccccgcca 60

                                                                       
Query: 264 ggtggtggcgctctgccaggctcccttcctcctcgatgatcccaacgtcggtctcatctt 323
           ||| |||||||| |||||||| |||||||| |||||||||||||||||||| || |||||
Sbjct: 61  ggttgtggcgctgtgccaggcccccttcctgctcgatgatcccaacgtcggccttatctt 120

                                                                       
Query: 324 ccccgccgatgccatcgcaagggccaagcactacctctccctcgcacccggcggcttagg 383
           ||||||||| ||||||||  ||||||||||||||||| || | |||||||| ||  ||||
Sbjct: 121 ccccgccgacgccatcgcgcgggccaagcactacctcgccatggcacccggtggactagg 180

                       
Query: 384 tgcgtacagtga 395
           ||| ||||||||
Sbjct: 181 tgcttacagtga 192
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>gb|DQ118094.1| Vitis labrusca AlaT1 mRNA, complete cds
          Length = 1434

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 92/113 (81%)
 Strand = Plus / Plus

                                                                       
Query: 175 gagctccagaaggagggcaagaggatcatcttcaccaacgtcggcaacccgcacgccctc 234
           ||||| |||||||| || || | ||| || ||||| ||||| |||||||| || || || 
Sbjct: 94  gagcttcagaaggaagggaaaaagattattttcacaaacgtgggcaaccctcatgctcta 153

                                                                
Query: 235 ggacagaagccactcaccttcccacgccaggtggtggcgctctgccaggctcc 287
           |||||||||||||| || || || ||||||||||| || || ||||| |||||
Sbjct: 154 ggacagaagccactgacttttcctcgccaggtggttgctctatgccaagctcc 206
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>gb|U31975.1|CRU31975 Chlamydomonas reinhardtii alanine aminotransferase mRNA, complete
           cds
          Length = 2534

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                          
Query: 184 aaggagggcaagaggatcatcttcaccaacgtcggcaacccgcacgc 230
           ||||||||||||  |||||| ||||| |||||||| |||||||||||
Sbjct: 313 aaggagggcaaggagatcattttcacaaacgtcggaaacccgcacgc 359
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>gb|DQ118095.1| Vitis vinifera AlaT1 mRNA, complete cds
          Length = 1455

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 91/113 (80%)
 Strand = Plus / Plus

                                                                       
Query: 175 gagctccagaaggagggcaagaggatcatcttcaccaacgtcggcaacccgcacgccctc 234
           ||||| |||||||| || || | ||| || ||||| ||||| |||||||| || || || 
Sbjct: 94  gagcttcagaaggaagggaaaaagattattttcacaaacgtgggcaaccctcatgctcta 153

                                                                
Query: 235 ggacagaagccactcaccttcccacgccaggtggtggcgctctgccaggctcc 287
           |||||||| ||||| || || || ||||||||||| || || ||||| |||||
Sbjct: 154 ggacagaaaccactgacttttcctcgccaggtggttgctctatgccaagctcc 206
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>ref|XM_587589.2| PREDICTED: Bos taurus similar to kyphoscoliosis peptidase
           (LOC510448), partial mRNA
          Length = 766

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 29  ctctgctctgcggcggcgcgccaggg 54
           |||||| |||||||||||||||||||
Sbjct: 307 ctctgcgctgcggcggcgcgccaggg 282
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>ref|NM_102180.2| Arabidopsis thaliana GGT1 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE
           1) AT1G23310 (GGT1) transcript variant AT1G23310.1 mRNA,
           complete cds
          Length = 2052

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                
Query: 235 ggacagaagccactcaccttcccacgccaggtggtggcgctctgccaggctcc 287
           |||||||||||| | || || || ||||||||||| ||||| ||||| |||||
Sbjct: 456 ggacagaagccattgacatttcctcgccaggtggttgcgctttgccaagctcc 508
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>ref|NM_001036006.1| Arabidopsis thaliana GGT1 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE
           1) AT1G23310 (GGT1) transcript variant AT1G23310.2 mRNA,
           complete cds
          Length = 2066

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                
Query: 235 ggacagaagccactcaccttcccacgccaggtggtggcgctctgccaggctcc 287
           |||||||||||| | || || || ||||||||||| ||||| ||||| |||||
Sbjct: 490 ggacagaagccattgacatttcctcgccaggtggttgcgctttgccaagctcc 542
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>ref|XM_515293.1| PREDICTED: Pan troglodytes a disintegrin and metalloproteinase domain
            17 (LOC459018), mRNA
          Length = 2565

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 275  tctgccaggctcccttcctcc 295
            |||||||||||||||||||||
Sbjct: 1833 tctgccaggctcccttcctcc 1853
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>gb|AY150373.1| Arabidopsis thaliana putative alanine aminotransferase (At1g23310)
           mRNA, complete cds
          Length = 1477

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                
Query: 235 ggacagaagccactcaccttcccacgccaggtggtggcgctctgccaggctcc 287
           |||||||||||| | || || || ||||||||||| ||||| ||||| |||||
Sbjct: 154 ggacagaagccattgacatttcctcgccaggtggttgcgctttgccaagctcc 206
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>gb|AF360195.1| Arabidopsis thaliana putative alanine aminotransferase (At1g23310)
           mRNA, complete cds
          Length = 1768

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                
Query: 235 ggacagaagccactcaccttcccacgccaggtggtggcgctctgccaggctcc 287
           |||||||||||| | || || || ||||||||||| ||||| ||||| |||||
Sbjct: 278 ggacagaagccattgacatttcctcgccaggtggttgcgctttgccaagctcc 330
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>gb|AY058868.1| Arabidopsis thaliana At1g23310/F26F24_4 mRNA, complete cds
          Length = 1762

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                
Query: 235 ggacagaagccactcaccttcccacgccaggtggtggcgctctgccaggctcc 287
           |||||||||||| | || || || ||||||||||| ||||| ||||| |||||
Sbjct: 260 ggacagaagccattgacatttcctcgccaggtggttgcgctttgccaagctcc 312
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>gb|AY056379.1| Arabidopsis thaliana At1g23310/F26F24_4 mRNA, complete cds
          Length = 1647

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                
Query: 235 ggacagaagccactcaccttcccacgccaggtggtggcgctctgccaggctcc 287
           |||||||||||| | || || || ||||||||||| ||||| ||||| |||||
Sbjct: 260 ggacagaagccattgacatttcctcgccaggtggttgcgctttgccaagctcc 312
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>emb|BX814587.1|CNS0AAUD Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB82ZG03 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1707

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                
Query: 235 ggacagaagccactcaccttcccacgccaggtggtggcgctctgccaggctcc 287
           |||||||||||| | || || || ||||||||||| ||||| ||||| |||||
Sbjct: 244 ggacagaagccattgacatttcctcgccaggtggttgcgctttgccaagctcc 296
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>gb|AC080162.7| Homo sapiens BAC clone RP11-400L8 from 2, complete sequence
          Length = 171653

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 275    tctgccaggctcccttcctcc 295
              |||||||||||||||||||||
Sbjct: 144125 tctgccaggctcccttcctcc 144105
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>gb|AF479639.1| Arabidopsis thaliana glutamate:glyoxylate aminotransferase 1 (GGT1)
           mRNA, complete cds
          Length = 1714

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                
Query: 235 ggacagaagccactcaccttcccacgccaggtggtggcgctctgccaggctcc 287
           |||||||||||| | || || || ||||||||||| ||||| ||||| |||||
Sbjct: 301 ggacagaagccattgacatttcctcgccaggtggttgcgctttgccaagctcc 353
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>gb|BT002643.1| Arabidopsis thaliana At1g23310/F26F24_4 gene, complete cds
          Length = 1446

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                
Query: 235 ggacagaagccactcaccttcccacgccaggtggtggcgctctgccaggctcc 287
           |||||||||||| | || || || ||||||||||| ||||| ||||| |||||
Sbjct: 154 ggacagaagccattgacatttcctcgccaggtggttgcgctttgccaagctcc 206
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>gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome
          Length = 2153922

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 210    caacgtcggcaacccgcacgccctc 234
              ||||| |||||||||||||||||||
Sbjct: 788135 caacgacggcaacccgcacgccctc 788159
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>ref|XM_503184.1| Yarrowia lipolytica CLIB122, YALI0D23287g predicted mRNA
          Length = 4983

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 98   tggactacgaggagctcaacgaga 121
            ||||| ||||||||||||||||||
Sbjct: 3584 tggacgacgaggagctcaacgaga 3607
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>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB
          Length = 1683333

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 328    gccgatgccatcgcaagggc 347
              ||||||||||||||||||||
Sbjct: 292803 gccgatgccatcgcaagggc 292784
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>emb|BX571691.13| Zebrafish DNA sequence from clone CH211-142G20 in linkage group 7,
           complete sequence
          Length = 79440

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 186 ggagggcaagaggatcatct 205
           ||||||||||||||||||||
Sbjct: 736 ggagggcaagaggatcatct 717
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>ref|XM_681871.1| PREDICTED: Danio rerio similar to Nedd4-binding protein 1 (N4BP1)
           (LOC558641), partial mRNA
          Length = 458

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 186 ggagggcaagaggatcatct 205
           ||||||||||||||||||||
Sbjct: 216 ggagggcaagaggatcatct 235
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>emb|AJ299420.1|CRU299420 Capsella rubella ORF1 and ORF2 DNA for hypothetical proteins
          Length = 5138

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 321 cttccccgccgatgccatcg 340
           ||||||||||||||||||||
Sbjct: 434 cttccccgccgatgccatcg 453
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>emb|AJ328439.1|HSA328439 Homo sapiens genomic sequence surrounding NotI site, clone
           HSJ4-AD9RS
          Length = 715

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 372 cggcggcttaggtgcgtaca 391
           ||||||||||||||||||||
Sbjct: 11  cggcggcttaggtgcgtaca 30
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>gb|AY106411.1| Zea mays PCO106344 mRNA sequence
          Length = 1217

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 24 ctctgctctgctctgcggcg 43
          ||||||||||||||||||||
Sbjct: 66 ctctgctctgctctgcggcg 47
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>gb|AC005757.1|AC005757 Homo sapiens chromosome 19, cosmid R32611, complete sequence
          Length = 45929

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 279   ccaggctcccttcctcctcgatga 302
             ||||||||||||||||||| ||||
Sbjct: 30098 ccaggctcccttcctcctccatga 30121
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>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica
          Length = 3633272

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 98      tggactacgaggagctcaacgaga 121
               ||||| ||||||||||||||||||
Sbjct: 3030212 tggacgacgaggagctcaacgaga 3030235


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,814,241
Number of Sequences: 3902068
Number of extensions: 2814241
Number of successful extensions: 64866
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64742
Number of HSP's gapped (non-prelim): 124
length of query: 397
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 375
effective length of database: 17,147,199,772
effective search space: 6430199914500
effective search space used: 6430199914500
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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