ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd21m10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_476904.1| Oryza sativa (japonica cultivar-group), mRNA 248 2e-62
2dbj|AK066157.1| Oryza sativa (japonica cultivar-group) cDNA clon... 248 2e-62
3gb|BT024104.1| Zea mays clone EL01N0520G08 mRNA sequence 202 8e-49
4gb|AY105898.1| Zea mays PCO133189 mRNA sequence 194 2e-46
5dbj|AK060743.1| Oryza sativa (japonica cultivar-group) cDNA clon... 188 1e-44
6dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 143 7e-31
7dbj|AP003861.2| Oryza sativa (japonica cultivar-group) genomic D... 143 7e-31
8dbj|AP003753.3| Oryza sativa (japonica cultivar-group) genomic D... 143 7e-31
9ref|NM_117530.2| Arabidopsis thaliana unknown protein AT4G14500 ... 42 1.8
10gb|AY377856.1| Brassica napus TOC33 (Toc33) gene, complete cds; ... 42 1.8
11gb|BT008748.1| Arabidopsis thaliana At4g14500 mRNA, complete cds 42 1.8
12gb|AY136359.1| Arabidopsis thaliana expressed protein (At4g14500... 42 1.8
13gb|AF428283.1|AF428283 Arabidopsis thaliana AT4g14500/dl3290w mR... 42 1.8
14gb|AY657927.1| Synthetic construct Peudomonas aeruginosa clone F... 40 7.2
15ref|XM_539971.2| PREDICTED: Canis familiaris similar to potassiu... 40 7.2
16gb|AC091768.4| Homo sapiens BAC clone RP11-703N5 from 7, complet... 40 7.2
17gb|AC151819.2| Xenopus tropicalis BAC clone ISB1-243M8 containin... 40 7.2
18gb|AE004743.1| Pseudomonas aeruginosa PAO1, section 304 of 529 o... 40 7.2
19gb|AC154353.1| Mus musculus BAC clone RP24-547N14 from chromosom... 40 7.2
20dbj|BS000019.1| Pan troglodytes chromosome 22 clone:PTB-023I17, ... 40 7.2
21emb|AL163209.2|HS21C009 Homo sapiens chromosome 21 segment HS21C009 40 7.2
22emb|BX255894.19| Zebrafish DNA sequence from clone CH211-251G8 i... 40 7.2
23emb|AL831778.8| Mouse DNA sequence from clone RP23-261L23 on chr... 40 7.2
24emb|AJ006997.1|HS190A9 Homo sapiens chromosome 21 PAC RPCIP704A9... 40 7.2

>ref|XM_476904.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1565

 Score =  248 bits (125), Expect = 2e-62
 Identities = 290/343 (84%), Gaps = 4/343 (1%)
 Strand = Plus / Plus

                                                                       
Query: 3   cttactattgtgttacgaagggagttccttatcct-ctttgcccaagaaggaaaaaccgc 61
           |||||||||||||||| |||||||||||||||||  ||||||| ||||||||||||||  
Sbjct: 655 cttactattgtgttacaaagggagttccttatccagctttgcctaagaaggaaaaaccaa 714

                                                                       
Query: 62  ggcgtgtggaattgtacttctcgagttggcgtattagacctgttcaatcgcccaaacaag 121
           ||||||||||| |||| ||||| ||||||||||||||| | |||||||| || |||||||
Sbjct: 715 ggcgtgtggaactgtatttctcaagttggcgtattagagcagttcaatcaccgaaacaag 774

                                                                       
Query: 122 atgggcagcaacccatggcatgtgaagtaactctgtttcactatgaggacatgggcatac 181
           |||| |||||| ||   |||||||||||||| ||| | ||||| |||||||||||||| |
Sbjct: 775 atggacagcaatcc---gcatgtgaagtaacgctggtccactacgaggacatgggcatcc 831

                                                                       
Query: 182 cgaaggatgttgctaaagttggtgtccgccacggcatgtggggtgctgttaaaaagctgc 241
           | || ||||| || || || |||||||| || ||||||||||||||||| || ||| | |
Sbjct: 832 ctaaagatgtcgccaaggtgggtgtccggcatggcatgtggggtgctgtaaagaagttcc 891

                                                                       
Query: 242 agtccggctttagagcatatcagctaatgagaaaatcagaacacatactgtcacacagtg 301
           ||||||| ||||||||||| |||| ||||||| |  ||||  |||  || || | |||||
Sbjct: 892 agtccggatttagagcataccagcaaatgagagacacagagaacaccctctctcgcagtg 951

                                                      
Query: 302 ccatcatggctcgggtgaccaccaagacatgcattgctggttc 344
           ||||||||||||| || |||||||||||||  |||||| ||||
Sbjct: 952 ccatcatggctcgagtaaccaccaagacatctattgctagttc 994



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 63/73 (86%)
 Strand = Plus / Plus

                                                                        
Query: 431  actggaagtgggtggtggtcggtagcacagtggctgcagtctgcgtgcttaacaccggaa 490
            ||||||| ||||||||| ||||| || |||||||||| ||||||||||| ||||| ||  
Sbjct: 1081 actggaaatgggtggtgttcggtggcgcagtggctgccgtctgcgtgctcaacactgggc 1140

                         
Query: 491  ttgtagggaaggc 503
            |||| ||||||||
Sbjct: 1141 ttgttgggaaggc 1153



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>dbj|AK066157.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059B01, full
            insert sequence
          Length = 1650

 Score =  248 bits (125), Expect = 2e-62
 Identities = 290/343 (84%), Gaps = 4/343 (1%)
 Strand = Plus / Plus

                                                                        
Query: 3    cttactattgtgttacgaagggagttccttatcct-ctttgcccaagaaggaaaaaccgc 61
            |||||||||||||||| |||||||||||||||||  ||||||| ||||||||||||||  
Sbjct: 740  cttactattgtgttacaaagggagttccttatccagctttgcctaagaaggaaaaaccaa 799

                                                                        
Query: 62   ggcgtgtggaattgtacttctcgagttggcgtattagacctgttcaatcgcccaaacaag 121
            ||||||||||| |||| ||||| ||||||||||||||| | |||||||| || |||||||
Sbjct: 800  ggcgtgtggaactgtatttctcaagttggcgtattagagcagttcaatcaccgaaacaag 859

                                                                        
Query: 122  atgggcagcaacccatggcatgtgaagtaactctgtttcactatgaggacatgggcatac 181
            |||| |||||| ||   |||||||||||||| ||| | ||||| |||||||||||||| |
Sbjct: 860  atggacagcaatcc---gcatgtgaagtaacgctggtccactacgaggacatgggcatcc 916

                                                                        
Query: 182  cgaaggatgttgctaaagttggtgtccgccacggcatgtggggtgctgttaaaaagctgc 241
            | || ||||| || || || |||||||| || ||||||||||||||||| || ||| | |
Sbjct: 917  ctaaagatgtcgccaaggtgggtgtccggcatggcatgtggggtgctgtaaagaagttcc 976

                                                                        
Query: 242  agtccggctttagagcatatcagctaatgagaaaatcagaacacatactgtcacacagtg 301
            ||||||| ||||||||||| |||| ||||||| |  ||||  |||  || || | |||||
Sbjct: 977  agtccggatttagagcataccagcaaatgagagacacagagaacaccctctctcgcagtg 1036

                                                       
Query: 302  ccatcatggctcgggtgaccaccaagacatgcattgctggttc 344
            ||||||||||||| || |||||||||||||  |||||| ||||
Sbjct: 1037 ccatcatggctcgagtaaccaccaagacatctattgctagttc 1079



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 63/73 (86%)
 Strand = Plus / Plus

                                                                        
Query: 431  actggaagtgggtggtggtcggtagcacagtggctgcagtctgcgtgcttaacaccggaa 490
            ||||||| ||||||||| ||||| || |||||||||| ||||||||||| ||||| ||  
Sbjct: 1166 actggaaatgggtggtgttcggtggcgcagtggctgccgtctgcgtgctcaacactgggc 1225

                         
Query: 491  ttgtagggaaggc 503
            |||| ||||||||
Sbjct: 1226 ttgttgggaaggc 1238



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>gb|BT024104.1| Zea mays clone EL01N0520G08 mRNA sequence
          Length = 1769

 Score =  202 bits (102), Expect = 8e-49
 Identities = 270/324 (83%), Gaps = 4/324 (1%)
 Strand = Plus / Plus

                                                                        
Query: 3    cttactattgtgttacgaagggagttccttatcc-tctttgcccaagaaggaaaaaccgc 61
            |||||||||||||||| ||||| ||||| ||||| || ||||||||||| ||||||||  
Sbjct: 905  cttactattgtgttacaaagggtgttccatatccatcattgcccaagaaagaaaaaccaa 964

                                                                        
Query: 62   ggcgtgtggaattgtacttctcgagttggcgtattagacctgttcaatcgcccaaacaag 121
            |||||||||| ||||||||||| ||||||||||||||| ||||||||||||| ||||| |
Sbjct: 965  ggcgtgtggagttgtacttctcaagttggcgtattagagctgttcaatcgcctaaacatg 1024

                                                                        
Query: 122  atgggcagcaacccatggcatgtgaagtaactctgtttcactatgaggacatgggcatac 181
              || |||||| |    || || ||||||||| || ||||||||||||||||||||||||
Sbjct: 1025 tgggtcagcaatc---tgcgtgcgaagtaactttggttcactatgaggacatgggcatac 1081

                                                                        
Query: 182  cgaaggatgttgctaaagttggtgtccgccacggcatgtggggtgctgttaaaaagctgc 241
            | || ||||| || |  |||| ||| ||||||||||||||||||||||| || || || |
Sbjct: 1082 caaaagatgtagccagggttgctgttcgccacggcatgtggggtgctgtgaagaaacttc 1141

                                                                        
Query: 242  agtccggctttagagcatatcagctaatgagaaaatcagaacacatactgtcacacagtg 301
            |||| || || ||||| || |||| ||||||| |  ||||| | |  ||||||||||| |
Sbjct: 1142 agtctgggttcagagcgtaccagcaaatgagagacacagaaaataccctgtcacacagcg 1201

                                    
Query: 302  ccatcatggctcgggtgaccacca 325
            |||| ||||||||  |||||||||
Sbjct: 1202 ccattatggctcgaatgaccacca 1225



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>gb|AY105898.1| Zea mays PCO133189 mRNA sequence
          Length = 681

 Score =  194 bits (98), Expect = 2e-46
 Identities = 269/324 (83%), Gaps = 4/324 (1%)
 Strand = Plus / Plus

                                                                       
Query: 3   cttactattgtgttacgaagggagttccttatcc-tctttgcccaagaaggaaaaaccgc 61
           |||||||||||||||| ||||| ||||| ||||| || ||||||||||| ||||||||  
Sbjct: 351 cttactattgtgttacaaagggtgttccatatccatcattgcccaagaaagaaaaaccaa 410

                                                                       
Query: 62  ggcgtgtggaattgtacttctcgagttggcgtattagacctgttcaatcgcccaaacaag 121
           |||||||||| ||||||||||| ||||||||||||||| ||||||||||||| ||||| |
Sbjct: 411 ggcgtgtggagttgtacttctcaagttggcgtattagagctgttcaatcgcctaaacatg 470

                                                                       
Query: 122 atgggcagcaacccatggcatgtgaagtaactctgtttcactatgaggacatgggcatac 181
             || |||||| |    || || ||||||||| || ||||||||||||||||||||||||
Sbjct: 471 tgggtcagcaatc---tgcgtgcgaagtaactttggttcactatgaggacatgggcatac 527

                                                                       
Query: 182 cgaaggatgttgctaaagttggtgtccgccacggcatgtggggtgctgttaaaaagctgc 241
           | || ||||| || |  |||| | | ||||||||||||||||||||||| || || || |
Sbjct: 528 caaaagatgtagccagggttgctattcgccacggcatgtggggtgctgtgaagaaacttc 587

                                                                       
Query: 242 agtccggctttagagcatatcagctaatgagaaaatcagaacacatactgtcacacagtg 301
           |||| || || ||||| || |||| ||||||| |  ||||| | |  ||||||||||| |
Sbjct: 588 agtctgggttcagagcgtaccagcaaatgagagacacagaaaataccctgtcacacagcg 647

                                   
Query: 302 ccatcatggctcgggtgaccacca 325
           |||| ||||||||  |||||||||
Sbjct: 648 ccattatggctcgaatgaccacca 671



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>dbj|AK060743.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-E03, full
            insert sequence
          Length = 1838

 Score =  188 bits (95), Expect = 1e-44
 Identities = 197/229 (86%), Gaps = 4/229 (1%)
 Strand = Plus / Plus

                                                                        
Query: 3    cttactattgtgttacgaagggagttccttatcct-ctttgcccaagaaggaaaaaccgc 61
            |||||||||||||||| |||||||||||||||||  ||||||| ||||||||||||||  
Sbjct: 1234 cttactattgtgttacaaagggagttccttatccagctttgcctaagaaggaaaaaccaa 1293

                                                                        
Query: 62   ggcgtgtggaattgtacttctcgagttggcgtattagacctgttcaatcgcccaaacaag 121
            ||||||||||| |||| ||||| ||||||||||||||| | |||||||| || |||||||
Sbjct: 1294 ggcgtgtggaactgtatttctcaagttggcgtattagagcagttcaatcaccgaaacaag 1353

                                                                        
Query: 122  atgggcagcaacccatggcatgtgaagtaactctgtttcactatgaggacatgggcatac 181
            |||| |||||| ||   |||||||| ||||| ||| | ||||| |||||||||||||| |
Sbjct: 1354 atggacagcaatcc---gcatgtgaggtaacgctggtccactacgaggacatgggcatcc 1410

                                                             
Query: 182  cgaaggatgttgctaaagttggtgtccgccacggcatgtggggtgctgt 230
            | || ||||| || || || |||||||| || |||||||||||||||||
Sbjct: 1411 ctaaagatgtcgccaaggtgggtgtccggcatggcatgtggggtgctgt 1459



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  143 bits (72), Expect = 7e-31
 Identities = 200/242 (82%), Gaps = 3/242 (1%)
 Strand = Plus / Minus

                                                                           
Query: 103     gttcaatcgcccaaacaagatgggcagcaacccatggcatgtgaagtaactctgtttcac 162
               |||||||| || ||||||||||| |||||| ||   |||||||||||||| ||| | |||
Sbjct: 4536332 gttcaatcaccgaaacaagatggacagcaatcc---gcatgtgaagtaacgctggtccac 4536276

                                                                           
Query: 163     tatgaggacatgggcataccgaaggatgttgctaaagttggtgtccgccacggcatgtgg 222
               || |||||||||||||| || || ||||| || || || |||||||| || |||||||||
Sbjct: 4536275 tacgaggacatgggcatccctaaagatgtcgccaaggtgggtgtccggcatggcatgtgg 4536216

                                                                           
Query: 223     ggtgctgttaaaaagctgcagtccggctttagagcatatcagctaatgagaaaatcagaa 282
               |||||||| || ||| | |||||||| ||||||||||| |||| ||||||| |  |||| 
Sbjct: 4536215 ggtgctgtaaagaagttccagtccggatttagagcataccagcaaatgagagacacagag 4536156

                                                                           
Query: 283     cacatactgtcacacagtgccatcatggctcgggtgaccaccaagacatgcattgctggt 342
                |||  || || | |||||||||||||||||| || |||||||||||||  |||||| ||
Sbjct: 4536155 aacaccctctctcgcagtgccatcatggctcgagtaaccaccaagacatctattgctagt 4536096

                 
Query: 343     tc 344
               ||
Sbjct: 4536095 tc 4536094



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 72/80 (90%), Gaps = 1/80 (1%)
 Strand = Plus / Minus

                                                                           
Query: 21      agggagttccttatcct-ctttgcccaagaaggaaaaaccgcggcgtgtggaattgtact 79
               ||||||||||||||||  ||||||| ||||||||||||||  ||||||||||| |||| |
Sbjct: 4536545 agggagttccttatccagctttgcctaagaaggaaaaaccaaggcgtgtggaactgtatt 4536486

                                   
Query: 80      tctcgagttggcgtattaga 99
               |||| |||||||||||||||
Sbjct: 4536485 tctcaagttggcgtattaga 4536466



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                           
Query: 431     actggaagtgggtggtggtcggtagcacagtggctgcagtctgcgtgcttaacaccggaa 490
               ||||||| ||||||||| ||||| || |||||||||| ||||||||||| ||||| ||  
Sbjct: 4536007 actggaaatgggtggtgttcggtggcgcagtggctgccgtctgcgtgctcaacactgggc 4535948

                            
Query: 491     ttgtagggaaggc 503
               |||| ||||||||
Sbjct: 4535947 ttgttgggaaggc 4535935



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>dbj|AP003861.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1046_F10
          Length = 118472

 Score =  143 bits (72), Expect = 7e-31
 Identities = 200/242 (82%), Gaps = 3/242 (1%)
 Strand = Plus / Minus

                                                                          
Query: 103    gttcaatcgcccaaacaagatgggcagcaacccatggcatgtgaagtaactctgtttcac 162
              |||||||| || ||||||||||| |||||| ||   |||||||||||||| ||| | |||
Sbjct: 115051 gttcaatcaccgaaacaagatggacagcaatcc---gcatgtgaagtaacgctggtccac 114995

                                                                          
Query: 163    tatgaggacatgggcataccgaaggatgttgctaaagttggtgtccgccacggcatgtgg 222
              || |||||||||||||| || || ||||| || || || |||||||| || |||||||||
Sbjct: 114994 tacgaggacatgggcatccctaaagatgtcgccaaggtgggtgtccggcatggcatgtgg 114935

                                                                          
Query: 223    ggtgctgttaaaaagctgcagtccggctttagagcatatcagctaatgagaaaatcagaa 282
              |||||||| || ||| | |||||||| ||||||||||| |||| ||||||| |  |||| 
Sbjct: 114934 ggtgctgtaaagaagttccagtccggatttagagcataccagcaaatgagagacacagag 114875

                                                                          
Query: 283    cacatactgtcacacagtgccatcatggctcgggtgaccaccaagacatgcattgctggt 342
               |||  || || | |||||||||||||||||| || |||||||||||||  |||||| ||
Sbjct: 114874 aacaccctctctcgcagtgccatcatggctcgagtaaccaccaagacatctattgctagt 114815

                
Query: 343    tc 344
              ||
Sbjct: 114814 tc 114813



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 72/80 (90%), Gaps = 1/80 (1%)
 Strand = Plus / Minus

                                                                          
Query: 21     agggagttccttatcct-ctttgcccaagaaggaaaaaccgcggcgtgtggaattgtact 79
              ||||||||||||||||  ||||||| ||||||||||||||  ||||||||||| |||| |
Sbjct: 115264 agggagttccttatccagctttgcctaagaaggaaaaaccaaggcgtgtggaactgtatt 115205

                                  
Query: 80     tctcgagttggcgtattaga 99
              |||| |||||||||||||||
Sbjct: 115204 tctcaagttggcgtattaga 115185



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                          
Query: 431    actggaagtgggtggtggtcggtagcacagtggctgcagtctgcgtgcttaacaccggaa 490
              ||||||| ||||||||| ||||| || |||||||||| ||||||||||| ||||| ||  
Sbjct: 114726 actggaaatgggtggtgttcggtggcgcagtggctgccgtctgcgtgctcaacactgggc 114667

                           
Query: 491    ttgtagggaaggc 503
              |||| ||||||||
Sbjct: 114666 ttgttgggaaggc 114654



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>dbj|AP003753.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
            clone:OJ1339_B08
          Length = 119212

 Score =  143 bits (72), Expect = 7e-31
 Identities = 200/242 (82%), Gaps = 3/242 (1%)
 Strand = Plus / Minus

                                                                        
Query: 103  gttcaatcgcccaaacaagatgggcagcaacccatggcatgtgaagtaactctgtttcac 162
            |||||||| || ||||||||||| |||||| ||   |||||||||||||| ||| | |||
Sbjct: 1672 gttcaatcaccgaaacaagatggacagcaatcc---gcatgtgaagtaacgctggtccac 1616

                                                                        
Query: 163  tatgaggacatgggcataccgaaggatgttgctaaagttggtgtccgccacggcatgtgg 222
            || |||||||||||||| || || ||||| || || || |||||||| || |||||||||
Sbjct: 1615 tacgaggacatgggcatccctaaagatgtcgccaaggtgggtgtccggcatggcatgtgg 1556

                                                                        
Query: 223  ggtgctgttaaaaagctgcagtccggctttagagcatatcagctaatgagaaaatcagaa 282
            |||||||| || ||| | |||||||| ||||||||||| |||| ||||||| |  |||| 
Sbjct: 1555 ggtgctgtaaagaagttccagtccggatttagagcataccagcaaatgagagacacagag 1496

                                                                        
Query: 283  cacatactgtcacacagtgccatcatggctcgggtgaccaccaagacatgcattgctggt 342
             |||  || || | |||||||||||||||||| || |||||||||||||  |||||| ||
Sbjct: 1495 aacaccctctctcgcagtgccatcatggctcgagtaaccaccaagacatctattgctagt 1436

              
Query: 343  tc 344
            ||
Sbjct: 1435 tc 1434



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 72/80 (90%), Gaps = 1/80 (1%)
 Strand = Plus / Minus

                                                                        
Query: 21   agggagttccttatcct-ctttgcccaagaaggaaaaaccgcggcgtgtggaattgtact 79
            ||||||||||||||||  ||||||| ||||||||||||||  ||||||||||| |||| |
Sbjct: 1885 agggagttccttatccagctttgcctaagaaggaaaaaccaaggcgtgtggaactgtatt 1826

                                
Query: 80   tctcgagttggcgtattaga 99
            |||| |||||||||||||||
Sbjct: 1825 tctcaagttggcgtattaga 1806



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                        
Query: 431  actggaagtgggtggtggtcggtagcacagtggctgcagtctgcgtgcttaacaccggaa 490
            ||||||| ||||||||| ||||| || |||||||||| ||||||||||| ||||| ||  
Sbjct: 1347 actggaaatgggtggtgttcggtggcgcagtggctgccgtctgcgtgctcaacactgggc 1288

                         
Query: 491  ttgtagggaaggc 503
            |||| ||||||||
Sbjct: 1287 ttgttgggaaggc 1275



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>ref|NM_117530.2| Arabidopsis thaliana unknown protein AT4G14500 mRNA, complete cds
          Length = 1768

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 8    tattgtgttacgaagggagttccttatcc 36
            |||||||| || |||||||||||||||||
Sbjct: 999  tattgtgtcacaaagggagttccttatcc 1027



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>gb|AY377856.1| Brassica napus TOC33 (Toc33) gene, complete cds; nuclear gene for
            chloroplast product
          Length = 1376

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 342  ttctgatggctccttggatca 362
            |||||||||||||||||||||
Sbjct: 1344 ttctgatggctccttggatca 1324



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>gb|BT008748.1| Arabidopsis thaliana At4g14500 mRNA, complete cds
          Length = 1302

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 8   tattgtgttacgaagggagttccttatcc 36
           |||||||| || |||||||||||||||||
Sbjct: 784 tattgtgtcacaaagggagttccttatcc 812



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>gb|AY136359.1| Arabidopsis thaliana expressed protein (At4g14500) mRNA, complete cds
          Length = 1770

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 8    tattgtgttacgaagggagttccttatcc 36
            |||||||| || |||||||||||||||||
Sbjct: 999  tattgtgtcacaaagggagttccttatcc 1027



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>gb|AF428283.1|AF428283 Arabidopsis thaliana AT4g14500/dl3290w mRNA, complete cds
          Length = 1764

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 8    tattgtgttacgaagggagttccttatcc 36
            |||||||| || |||||||||||||||||
Sbjct: 995  tattgtgtcacaaagggagttccttatcc 1023



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>gb|AY657927.1| Synthetic construct Peudomonas aeruginosa clone FLH046013.01F
           PA3196 gene, partial cds
          Length = 531

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 437 agtgggtggtggtcggtagc 456
           ||||||||||||||||||||
Sbjct: 173 agtgggtggtggtcggtagc 192



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>ref|XM_539971.2| PREDICTED: Canis familiaris similar to potassium large conductance
            pH-sensitive channel, subfamily M, alpha member 3
            (LOC482856), mRNA
          Length = 4041

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 334  attgctggttctgatggctc 353
            ||||||||||||||||||||
Sbjct: 1254 attgctggttctgatggctc 1235



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>gb|AC091768.4| Homo sapiens BAC clone RP11-703N5 from 7, complete sequence
          Length = 104955

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 271   agaaaatcagaacacatactgtcacaca 298
             ||||||||| |||||||||||| |||||
Sbjct: 71391 agaaaatcataacacatactgttacaca 71418



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>gb|AC151819.2| Xenopus tropicalis BAC clone ISB1-243M8 containing hairy2 gene,
            complete cds, complete sequence
          Length = 91756

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 122  atgggcagcaacccatggca 141
            ||||||||||||||||||||
Sbjct: 3980 atgggcagcaacccatggca 3999



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>gb|AE004743.1| Pseudomonas aeruginosa PAO1, section 304 of 529 of the complete
            genome
          Length = 10146

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 437  agtgggtggtggtcggtagc 456
            ||||||||||||||||||||
Sbjct: 8796 agtgggtggtggtcggtagc 8777



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>gb|AC154353.1| Mus musculus BAC clone RP24-547N14 from chromosome 12, complete
             sequence
          Length = 249825

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 258   atatcagctaatgagaaaat 277
             ||||||||||||||||||||
Sbjct: 25238 atatcagctaatgagaaaat 25257



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>dbj|BS000019.1| Pan troglodytes chromosome 22 clone:PTB-023I17, map 22, complete
             sequences
          Length = 141751

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    gttccttatcctctttgccc 45
             ||||||||||||||||||||
Sbjct: 65316 gttccttatcctctttgccc 65335



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>emb|AL163209.2|HS21C009 Homo sapiens chromosome 21 segment HS21C009
          Length = 340000

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 26     gttccttatcctctttgccc 45
              ||||||||||||||||||||
Sbjct: 267630 gttccttatcctctttgccc 267649



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>emb|BX255894.19| Zebrafish DNA sequence from clone CH211-251G8 in linkage group 19,
              complete sequence
          Length = 180950

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 419    aacatggtttcaactggaag 438
              ||||||||||||||||||||
Sbjct: 170023 aacatggtttcaactggaag 170004



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>emb|AL831778.8| Mouse DNA sequence from clone RP23-261L23 on chromosome 4, complete
              sequence
          Length = 213495

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 260    atcagctaatgagaaaatca 279
              ||||||||||||||||||||
Sbjct: 146492 atcagctaatgagaaaatca 146473



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>emb|AJ006997.1|HS190A9 Homo sapiens chromosome 21 PAC RPCIP704A9190Q2, complete sequence
          Length = 123708

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    gttccttatcctctttgccc 45
             ||||||||||||||||||||
Sbjct: 52157 gttccttatcctctttgccc 52176


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,343,119
Number of Sequences: 3902068
Number of extensions: 4343119
Number of successful extensions: 70361
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70269
Number of HSP's gapped (non-prelim): 75
length of query: 530
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 507
effective length of database: 17,143,297,704
effective search space: 8691651935928
effective search space used: 8691651935928
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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