ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd22a21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY107932.1| Zea mays PCO078506 mRNA sequence 157 5e-35
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 153 7e-34
3dbj|AP006531.3| Oryza sativa (japonica cultivar-group) genomic D... 153 7e-34
4dbj|AP006839.2| Oryza sativa (japonica cultivar-group) genomic D... 153 7e-34
5dbj|AK106188.1| Oryza sativa (japonica cultivar-group) cDNA clon... 149 1e-32
6dbj|AK104453.1| Oryza sativa (japonica cultivar-group) cDNA clon... 149 1e-32
7dbj|AK099185.1| Oryza sativa (japonica cultivar-group) cDNA clon... 149 1e-32
8dbj|AK060020.1| Oryza sativa (japonica cultivar-group) cDNA clon... 149 1e-32
9emb|AJ620335.1| Oryza sativa (indica cultivar-group) mRNA for E3... 48 0.031
10emb|AJ867287.1| Oryza sativa (indica cultivar-group) mRNA for ub... 48 0.031
11gb|AC148997.1| Mus musculus BAC clone RP23-338B6 from chromosome... 44 0.48
12gb|AC135639.4| Mus musculus BAC clone RP23-330O16 from chromosom... 44 0.48
13emb|AL929566.30| Zebrafish DNA sequence from clone CH211-159C13 ... 44 0.48
14gb|AC132377.3| Mus musculus BAC clone RP24-81F14 from chromosome... 42 1.9
15gb|AC121966.2| Mus musculus BAC clone RP24-267N15 from 12, compl... 42 1.9
16gb|AC115754.7| Mus musculus chromosome 12, clone RP23-34D20, com... 42 1.9
17emb|BX572601.1| Rhodopseudomonas palustris CGA009 complete genom... 42 1.9
18gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 42 1.9
19emb|BX957281.8| Zebrafish DNA sequence from clone DKEY-101D6 in ... 42 1.9
20gb|AC123806.4| Mus musculus BAC clone RP24-152B7 from 10, comple... 42 1.9
21gb|AC141428.4| Mus musculus BAC clone RP23-127I7 from 10, comple... 42 1.9
22emb|AL607030.15| Mouse DNA sequence from clone RP23-304O12 on ch... 42 1.9
23emb|AL806522.4| Mouse DNA sequence from clone RP23-167H2 on chro... 42 1.9
24ref|XM_477429.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.5
25gb|AC110197.9| Mus musculus chromosome 1, clone RP24-405O20, com... 40 7.5
26gb|AY487233.1| Arabidopsis arenosa isolate Aren4 RPP13-like prot... 40 7.5
27gb|AC126670.4| Mus musculus BAC clone RP24-469G14 from chromosom... 40 7.5
28gb|AC122246.5| Mus musculus BAC clone RP23-152K13 from 1, comple... 40 7.5
29gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 40 7.5
30gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 40 7.5
31emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete ... 40 7.5
32gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hilde... 40 7.5
33gb|AC157653.2| Mus musculus BAC clone RP24-325H17 from chromosom... 40 7.5
34dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
35dbj|AP002883.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
36dbj|AP005475.4| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
37dbj|AP005673.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
38dbj|BS000126.1| Pan troglodytes chromosome 22 clone:PTB-128A24, ... 40 7.5
39dbj|AP000381.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 7.5
40gb|AC148151.3| Monodelphis domestica clone VMRC6-414K6, complete... 40 7.5
41dbj|AP001730.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 7.5
42gb|AC117681.20| Mus musculus chromosome 1, clone RP23-436A22, co... 40 7.5
43gb|AC149607.6| Mus musculus BAC clone RP23-455C13 from chromosom... 40 7.5
44gb|DP000021.1| Monodelphis domestica target 1 genomic scaffold 40 7.5
45emb|AL121603.4|CNS01DS0 Human chromosome 14 DNA sequence BAC R-7... 40 7.5
46dbj|AP000159.1| Homo sapiens genomic DNA, chromosome 21q22.2, DS... 40 7.5
47dbj|AP000017.2| Homo sapiens genomic DNA of 21q22.2 Down Syndrom... 40 7.5
48dbj|AP001415.1| Homo sapiens genomic DNA, chromosome 21q22.2, cl... 40 7.5 
>gb|AY107932.1| Zea mays PCO078506 mRNA sequence
          Length = 920

 Score =  157 bits (79), Expect = 5e-35
 Identities = 109/119 (91%)
 Strand = Plus / Plus

                                                                       
Query: 433 ggtacacaaggtctcagtcgtgccctttctgccgcggaagcctgaagagagtccagtcca 492
           ||||||||||||| ||||| ||||| ||||||||||| ||||||||||| |||| |||||
Sbjct: 327 ggtacacaaggtcccagtcatgcccgttctgccgcgggagcctgaagagggtccggtcca 386

                                                                      
Query: 493 gggacctgtgggtgctcaccggcgacgacgacgtgatcgaccccgtgaccctggagaag 551
           | ||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||
Sbjct: 387 gagacctgtgggtgctcaccggcgacgacgacgtgatcgacacggtgacgctggagaag 445
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  153 bits (77), Expect = 7e-34
 Identities = 110/121 (90%)
 Strand = Plus / Plus

                                                                            
Query: 431      caggtacacaaggtctcagtcgtgccctttctgccgcggaagcctgaagagagtccagtc 490
                |||||||||||| |||||||| ||||| ||||||||||| ||||||||||||||||  ||
Sbjct: 39425127 caggtacacaagatctcagtcatgcccgttctgccgcgggagcctgaagagagtccgatc 39425186

                                                                            
Query: 491      cagggacctgtgggtgctcaccggcgacgacgacgtgatcgaccccgtgaccctggagaa 550
                 |||||||| |||||||||||||| |||||||||||||||||| ||||||| ||||||||
Sbjct: 39425187 aagggacctctgggtgctcaccggagacgacgacgtgatcgacaccgtgacgctggagaa 39425246

                 
Query: 551      g 551
                |
Sbjct: 39425247 g 39425247



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 362      tattttctgctgtgctctctgttt 385
                |||||| |||||||||||||||||
Sbjct: 10948536 tattttgtgctgtgctctctgttt 10948513
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>dbj|AP006531.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
           BAC clone:B1417F08
          Length = 155536

 Score =  153 bits (77), Expect = 7e-34
 Identities = 110/121 (90%)
 Strand = Plus / Plus

                                                                       
Query: 431 caggtacacaaggtctcagtcgtgccctttctgccgcggaagcctgaagagagtccagtc 490
           |||||||||||| |||||||| ||||| ||||||||||| ||||||||||||||||  ||
Sbjct: 141 caggtacacaagatctcagtcatgcccgttctgccgcgggagcctgaagagagtccgatc 200

                                                                       
Query: 491 cagggacctgtgggtgctcaccggcgacgacgacgtgatcgaccccgtgaccctggagaa 550
            |||||||| |||||||||||||| |||||||||||||||||| ||||||| ||||||||
Sbjct: 201 aagggacctctgggtgctcaccggagacgacgacgtgatcgacaccgtgacgctggagaa 260

            
Query: 551 g 551
           |
Sbjct: 261 g 261
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>dbj|AP006839.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             fosmid clone:OSJNOa108M02
          Length = 38208

 Score =  153 bits (77), Expect = 7e-34
 Identities = 110/121 (90%)
 Strand = Plus / Plus

                                                                         
Query: 431   caggtacacaaggtctcagtcgtgccctttctgccgcggaagcctgaagagagtccagtc 490
             |||||||||||| |||||||| ||||| ||||||||||| ||||||||||||||||  ||
Sbjct: 35651 caggtacacaagatctcagtcatgcccgttctgccgcgggagcctgaagagagtccgatc 35710

                                                                         
Query: 491   cagggacctgtgggtgctcaccggcgacgacgacgtgatcgaccccgtgaccctggagaa 550
              |||||||| |||||||||||||| |||||||||||||||||| ||||||| ||||||||
Sbjct: 35711 aagggacctctgggtgctcaccggagacgacgacgtgatcgacaccgtgacgctggagaa 35770

              
Query: 551   g 551
             |
Sbjct: 35771 g 35771
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>dbj|AK106188.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-D10, full
           insert sequence
          Length = 1173

 Score =  149 bits (75), Expect = 1e-32
 Identities = 108/119 (90%)
 Strand = Plus / Plus

                                                                       
Query: 433 ggtacacaaggtctcagtcgtgccctttctgccgcggaagcctgaagagagtccagtcca 492
           |||||||||| |||||||| ||||| ||||||||||| ||||||||||||||||  || |
Sbjct: 742 ggtacacaagatctcagtcatgcccgttctgccgcgggagcctgaagagagtccgatcaa 801

                                                                      
Query: 493 gggacctgtgggtgctcaccggcgacgacgacgtgatcgaccccgtgaccctggagaag 551
           ||||||| |||||||||||||| |||||||||||||||||| ||||||| |||||||||
Sbjct: 802 gggacctctgggtgctcaccggagacgacgacgtgatcgacaccgtgacgctggagaag 860
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>dbj|AK104453.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-H10, full
           insert sequence
          Length = 1290

 Score =  149 bits (75), Expect = 1e-32
 Identities = 108/119 (90%)
 Strand = Plus / Plus

                                                                       
Query: 433 ggtacacaaggtctcagtcgtgccctttctgccgcggaagcctgaagagagtccagtcca 492
           |||||||||| |||||||| ||||| ||||||||||| ||||||||||||||||  || |
Sbjct: 742 ggtacacaagatctcagtcatgcccgttctgccgcgggagcctgaagagagtccgatcaa 801

                                                                      
Query: 493 gggacctgtgggtgctcaccggcgacgacgacgtgatcgaccccgtgaccctggagaag 551
           ||||||| |||||||||||||| |||||||||||||||||| ||||||| |||||||||
Sbjct: 802 gggacctctgggtgctcaccggagacgacgacgtgatcgacaccgtgacgctggagaag 860
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>dbj|AK099185.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023105K15, full
           insert sequence
          Length = 1291

 Score =  149 bits (75), Expect = 1e-32
 Identities = 108/119 (90%)
 Strand = Plus / Plus

                                                                       
Query: 433 ggtacacaaggtctcagtcgtgccctttctgccgcggaagcctgaagagagtccagtcca 492
           |||||||||| |||||||| ||||| ||||||||||| ||||||||||||||||  || |
Sbjct: 743 ggtacacaagatctcagtcatgcccgttctgccgcgggagcctgaagagagtccgatcaa 802

                                                                      
Query: 493 gggacctgtgggtgctcaccggcgacgacgacgtgatcgaccccgtgaccctggagaag 551
           ||||||| |||||||||||||| |||||||||||||||||| ||||||| |||||||||
Sbjct: 803 gggacctctgggtgctcaccggagacgacgacgtgatcgacaccgtgacgctggagaag 861
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>dbj|AK060020.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-G11, full
           insert sequence
          Length = 1296

 Score =  149 bits (75), Expect = 1e-32
 Identities = 108/119 (90%)
 Strand = Plus / Plus

                                                                       
Query: 433 ggtacacaaggtctcagtcgtgccctttctgccgcggaagcctgaagagagtccagtcca 492
           |||||||||| |||||||| ||||| ||||||||||| ||||||||||||||||  || |
Sbjct: 742 ggtacacaagatctcagtcatgcccgttctgccgcgggagcctgaagagagtccgatcaa 801

                                                                      
Query: 493 gggacctgtgggtgctcaccggcgacgacgacgtgatcgaccccgtgaccctggagaag 551
           ||||||| |||||||||||||| |||||||||||||||||| ||||||| |||||||||
Sbjct: 802 gggacctctgggtgctcaccggagacgacgacgtgatcgacaccgtgacgctggagaag 860
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>emb|AJ620335.1| Oryza sativa (indica cultivar-group) mRNA for E3 ubiquitin ligase
           (ubl gene)
          Length = 762

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 54/64 (84%)
 Strand = Plus / Plus

                                                                       
Query: 448 agtcgtgccctttctgccgcggaagcctgaagagagtccagtccagggacctgtgggtgc 507
           |||| |||||||||||||| |||||||| ||  || | |  || ||||||||||||||||
Sbjct: 566 agtcttgccctttctgccgaggaagccttaaacgaattcgctcaagggacctgtgggtgc 625

               
Query: 508 tcac 511
           ||||
Sbjct: 626 tcac 629
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>emb|AJ867287.1| Oryza sativa (indica cultivar-group) mRNA for ubiquitin ligase E3
           (ubl gene)
          Length = 762

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 54/64 (84%)
 Strand = Plus / Plus

                                                                       
Query: 448 agtcgtgccctttctgccgcggaagcctgaagagagtccagtccagggacctgtgggtgc 507
           |||| |||||||||||||| |||||||| ||  || | |  || ||||||||||||||||
Sbjct: 566 agtcttgccctttctgccgaggaagccttaaacgaattcgctcaagggacctgtgggtgc 625

               
Query: 508 tcac 511
           ||||
Sbjct: 626 tcac 629
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>gb|AC148997.1| Mus musculus BAC clone RP23-338B6 from chromosome 7, complete sequence
          Length = 232770

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 181   accattgaagtgattgccaagt 202
             ||||||||||||||||||||||
Sbjct: 16981 accattgaagtgattgccaagt 16960
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>gb|AC135639.4| Mus musculus BAC clone RP23-330O16 from chromosome 7, complete sequence
          Length = 217404

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 181    accattgaagtgattgccaagt 202
              ||||||||||||||||||||||
Sbjct: 159760 accattgaagtgattgccaagt 159739
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>emb|AL929566.30| Zebrafish DNA sequence from clone CH211-159C13 in linkage group 8,
             complete sequence
          Length = 137166

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 99    tttgttgtgattgtagctgtag 120
             ||||||||||||||||||||||
Sbjct: 62371 tttgttgtgattgtagctgtag 62392
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>gb|AC132377.3| Mus musculus BAC clone RP24-81F14 from chromosome 16, complete sequence
          Length = 173662

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 11     tgttataatgataatgaactg 31
              |||||||||||||||||||||
Sbjct: 125079 tgttataatgataatgaactg 125059
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>gb|AC121966.2| Mus musculus BAC clone RP24-267N15 from 12, complete sequence
          Length = 163521

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 350    ccagtgaaaacatattttctg 370
              |||||||||||||||||||||
Sbjct: 148352 ccagtgaaaacatattttctg 148332
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>gb|AC115754.7| Mus musculus chromosome 12, clone RP23-34D20, complete sequence
          Length = 217173

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 350    ccagtgaaaacatattttctg 370
              |||||||||||||||||||||
Sbjct: 206972 ccagtgaaaacatattttctg 206992
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>emb|BX572601.1| Rhodopseudomonas palustris CGA009 complete genome; segment 9/16
          Length = 348580

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 512    cggcgacgacgacgtgatcga 532
              |||||||||||||||||||||
Sbjct: 223006 cggcgacgacgacgtgatcga 223026
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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 515     cgacgacgacgtgatcgaccc 535
               |||||||||||||||||||||
Sbjct: 1343995 cgacgacgacgtgatcgaccc 1343975
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>emb|BX957281.8| Zebrafish DNA sequence from clone DKEY-101D6 in linkage group 1,
             complete sequence
          Length = 99167

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 2     gcaagttgttgttataatgat 22
             |||||||||||||||||||||
Sbjct: 69956 gcaagttgttgttataatgat 69976
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>gb|AC123806.4| Mus musculus BAC clone RP24-152B7 from 10, complete sequence
          Length = 160167

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 108   attgtagctgtagatactttt 128
             |||||||||||||||||||||
Sbjct: 35015 attgtagctgtagatactttt 35035
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>gb|AC141428.4| Mus musculus BAC clone RP23-127I7 from 10, complete sequence
          Length = 164381

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 108    attgtagctgtagatactttt 128
              |||||||||||||||||||||
Sbjct: 117669 attgtagctgtagatactttt 117689
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>emb|AL607030.15| Mouse DNA sequence from clone RP23-304O12 on chromosome 11, complete
              sequence
          Length = 189236

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 339    tcaaacaatgtccagtgaaaa 359
              |||||||||||||||||||||
Sbjct: 128979 tcaaacaatgtccagtgaaaa 128999
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>emb|AL806522.4| Mouse DNA sequence from clone RP23-167H2 on chromosome 2, complete
             sequence
          Length = 189104

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 359   acatattttctgctgtgctct 379
             |||||||||||||||||||||
Sbjct: 42418 acatattttctgctgtgctct 42438
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>ref|XM_477429.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1107

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 448 agtcgtgccctttctgccgcggaagcct 475
           |||| |||||||||||||| ||||||||
Sbjct: 727 agtcttgccctttctgccgaggaagcct 754
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>gb|AC110197.9| Mus musculus chromosome 1, clone RP24-405O20, complete sequence
          Length = 144856

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 37     ttcattacagtgttgggagc 56
              ||||||||||||||||||||
Sbjct: 130009 ttcattacagtgttgggagc 129990
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>gb|AY487233.1| Arabidopsis arenosa isolate Aren4 RPP13-like protein gene, partial
           cds
          Length = 998

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 334 tctgttcaaacaatgtccag 353
           ||||||||||||||||||||
Sbjct: 171 tctgttcaaacaatgtccag 152
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>gb|AC126670.4| Mus musculus BAC clone RP24-469G14 from chromosome 1, complete sequence
          Length = 200595

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 491    cagggacctgtgggtgctca 510
              ||||||||||||||||||||
Sbjct: 168540 cagggacctgtgggtgctca 168559
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>gb|AC122246.5| Mus musculus BAC clone RP23-152K13 from 1, complete sequence
          Length = 203739

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 491   cagggacctgtgggtgctca 510
             ||||||||||||||||||||
Sbjct: 34910 cagggacctgtgggtgctca 34929
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 518     cgacgacgtgatcgaccccg 537
               ||||||||||||||||||||
Sbjct: 3548998 cgacgacgtgatcgaccccg 3549017
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>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 515     cgacgacgacgtgatcgacc 534
               ||||||||||||||||||||
Sbjct: 2378625 cgacgacgacgtgatcgacc 2378644
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>emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete genome; segment 23/29
          Length = 295150

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 504   gtgctcaccggcgacgacgacgtg 527
             |||||||||||| |||||||||||
Sbjct: 27362 gtgctcaccggccacgacgacgtg 27385
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>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete
              genome
          Length = 3570858

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 506    gctcaccggcgacgacgacg 525
              ||||||||||||||||||||
Sbjct: 446791 gctcaccggcgacgacgacg 446772
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>gb|AC157653.2| Mus musculus BAC clone RP24-325H17 from chromosome 7, complete sequence
          Length = 168825

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 430    acaggtacacaaggtctcag 449
              ||||||||||||||||||||
Sbjct: 123023 acaggtacacaaggtctcag 123004
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 448      agtcgtgccctttctgccgcggaagcct 475
                |||| |||||||||||||| ||||||||
Sbjct: 10309672 agtcttgccctttctgccgaggaagcct 10309699
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>dbj|AP002883.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0487H02
          Length = 145491

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 362   tattttctgctgtgctctctgttt 385
             |||||| |||||||||||||||||
Sbjct: 51378 tattttgtgctgtgctctctgttt 51355
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>dbj|AP005475.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0091L05
          Length = 173983

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 448   agtcgtgccctttctgccgcggaagcct 475
             |||| |||||||||||||| ||||||||
Sbjct: 20852 agtcttgccctttctgccgaggaagcct 20879
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>dbj|AP005673.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:B1029H08
          Length = 137050

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 448    agtcgtgccctttctgccgcggaagcct 475
              |||| |||||||||||||| ||||||||
Sbjct: 131591 agtcttgccctttctgccgaggaagcct 131618
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>dbj|BS000126.1| Pan troglodytes chromosome 22 clone:PTB-128A24, map 22, complete
             sequences
          Length = 207747

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 260   tgcctttctccgaagctaattttg 283
             ||||||||||||||| ||||||||
Sbjct: 24656 tgcctttctccgaagataattttg 24679
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>dbj|AP000381.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K17E12
          Length = 63604

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 9     gttgttataatgataatgaa 28
             ||||||||||||||||||||
Sbjct: 28921 gttgttataatgataatgaa 28940
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>gb|AC148151.3| Monodelphis domestica clone VMRC6-414K6, complete sequence
          Length = 158302

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 352   agtgaaaacatattttctgc 371
             ||||||||||||||||||||
Sbjct: 48194 agtgaaaacatattttctgc 48175



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 352  agtgaaaacatattttctgc 371
            ||||||||||||||||||||
Sbjct: 2720 agtgaaaacatattttctgc 2739
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>dbj|AP001730.1| Homo sapiens genomic DNA, chromosome 21q, section 74/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 260    tgcctttctccgaagctaattttg 283
              ||||||||||||||| ||||||||
Sbjct: 187060 tgcctttctccgaagataattttg 187083
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>gb|AC117681.20| Mus musculus chromosome 1, clone RP23-436A22, complete sequence
          Length = 198868

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 37    ttcattacagtgttgggagc 56
             ||||||||||||||||||||
Sbjct: 40481 ttcattacagtgttgggagc 40462
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>gb|AC149607.6| Mus musculus BAC clone RP23-455C13 from chromosome 7, complete sequence
          Length = 206284

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 430   acaggtacacaaggtctcag 449
             ||||||||||||||||||||
Sbjct: 19465 acaggtacacaaggtctcag 19446
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>gb|DP000021.1| Monodelphis domestica target 1 genomic scaffold
          Length = 1833844

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 352   agtgaaaacatattttctgc 371
             ||||||||||||||||||||
Sbjct: 48194 agtgaaaacatattttctgc 48175



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 352  agtgaaaacatattttctgc 371
            ||||||||||||||||||||
Sbjct: 2720 agtgaaaacatattttctgc 2739
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>emb|AL121603.4|CNS01DS0 Human chromosome 14 DNA sequence BAC R-73E17 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 141534

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 223   gttctatttactggcttcct 242
             ||||||||||||||||||||
Sbjct: 97315 gttctatttactggcttcct 97334
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>dbj|AP000159.1| Homo sapiens genomic DNA, chromosome 21q22.2, DSCR region, clone
             D47-S479, segment 11/16, complete sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 260   tgcctttctccgaagctaattttg 283
             ||||||||||||||| ||||||||
Sbjct: 34477 tgcctttctccgaagataattttg 34500
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>dbj|AP000017.2| Homo sapiens genomic DNA of 21q22.2 Down Syndrome region, segment 8/13
          Length = 100000

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 260   tgcctttctccgaagctaattttg 283
             ||||||||||||||| ||||||||
Sbjct: 68873 tgcctttctccgaagataattttg 68896
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>dbj|AP001415.1| Homo sapiens genomic DNA, chromosome 21q22.2, clone:D32, LB7T-ERG
             region, complete sequence
          Length = 53797

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 260   tgcctttctccgaagctaattttg 283
             ||||||||||||||| ||||||||
Sbjct: 20191 tgcctttctccgaagataattttg 20214


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,042,555
Number of Sequences: 3902068
Number of extensions: 5042555
Number of successful extensions: 98232
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97929
Number of HSP's gapped (non-prelim): 303
length of query: 551
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 528
effective length of database: 17,143,297,704
effective search space: 9051661187712
effective search space used: 9051661187712
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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