ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | basd22a14 |
|---|---|
| Clone Library Name | barley_pub |
>RBBP6_MOUSE (P97868) Retinoblastoma-binding protein 6 (p53-associated cellular| protein of testis) (Proliferation potential-related protein) (Protein P2P-R) Length = 1790 Score = 55.5 bits (132), Expect = 6e-08 Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 4/80 (5%) Frame = +1 Query: 85 PAASVSEVDDLPAELHCQLCNKVMADAVLTSKCCFVSFCDKCIRDYIITQSKCICGV--- 255 P++S E D +P EL C +C +M DAV+ CC S+CD+CIR ++ + C Sbjct: 244 PSSSSEEDDPIPDELLCLICKDIMTDAVVIP-CCGNSYCDECIRTALLESDEHTCPTCHQ 302 Query: 256 -KVLADSLIPNPTVRSTISN 312 V D+LI N +R ++N Sbjct: 303 NDVSPDALIANKFLRQAVNN 322
>RBBP6_HUMAN (Q7Z6E9) Retinoblastoma-binding protein 6 (p53-associated cellular| protein of testis) (Proliferation potential-related protein) (Protein P2P-R) (Retinoblastoma-binding Q protein 1) (Protein RBQ-1) Length = 1792 Score = 55.5 bits (132), Expect = 6e-08 Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 4/80 (5%) Frame = +1 Query: 85 PAASVSEVDDLPAELHCQLCNKVMADAVLTSKCCFVSFCDKCIRDYIITQSKCICGV--- 255 P++S E D +P EL C +C +M DAV+ CC S+CD+CIR ++ + C Sbjct: 243 PSSSSEEDDPIPDELLCLICKDIMTDAVVIP-CCGNSYCDECIRTALLESDEHTCPTCHQ 301 Query: 256 -KVLADSLIPNPTVRSTISN 312 V D+LI N +R ++N Sbjct: 302 NDVSPDALIANKFLRQAVNN 321
>RAD18_KLULA (Q6CTZ8) Postreplication repair ubiquitin-protein ligase E3 RAD18| (EC 6.-.-.-) Length = 427 Score = 44.3 bits (103), Expect = 1e-04 Identities = 23/62 (37%), Positives = 35/62 (56%) Frame = +1 Query: 94 SVSEVDDLPAELHCQLCNKVMADAVLTSKCCFVSFCDKCIRDYIITQSKCICGVKVLADS 273 SV ++ DL + L C +C + +VLT C SFC CIR Y+ +SKC + L +S Sbjct: 19 SVPQLTDLDSLLRCHICKDFLKASVLTP--CGHSFCSICIRKYLQKESKCPLCLSDLTES 76 Query: 274 LI 279 ++ Sbjct: 77 ML 78
>COP1_ARATH (P43254) Ubiquitin-protein ligase COP1 (EC 6.3.2.-) (Constitutive| photomorphogenesis protein 1) Length = 675 Score = 43.5 bits (101), Expect = 2e-04 Identities = 40/149 (26%), Positives = 62/149 (41%), Gaps = 15/149 (10%) Frame = +1 Query: 37 PVVPLNPVDGILSALAPAASVSEVDD------------LPAELHCQLCNKVMADAVLTSK 180 PVVP D S++ A+ E DD L +L C +C +++ DA LT+ Sbjct: 8 PVVPAVKPDPRTSSVGEGANRHENDDGGSGGSEIGAPDLDKDLLCPICMQIIKDAFLTA- 66 Query: 181 CCFVSFCDKCIRDYIITQSKCICGVKVLADS-LIPNPTVRSTISNLLGTRTCSTASGTGK 357 C SFC CI ++ +S C C + L ++ L PN + + TAS + Sbjct: 67 -CGHSFCYMCIITHLRNKSDCPCCSQHLTNNQLYPNFLLDKLLKKTSARHVSKTASPLDQ 125 Query: 358 HRSS--SGSNADPKSQSHTTSAALERDTK 438 R + G + K + + ER K Sbjct: 126 FREALQRGCDVSIKEVDNLLTLLAERKRK 154
>RAD18_ASHGO (Q75EN0) Postreplication repair ubiquitin-protein ligase E3 RAD18| (EC 6.-.-.-) Length = 443 Score = 41.6 bits (96), Expect = 0.001 Identities = 18/50 (36%), Positives = 30/50 (60%) Frame = +1 Query: 94 SVSEVDDLPAELHCQLCNKVMADAVLTSKCCFVSFCDKCIRDYIITQSKC 243 ++ E+ DL + L C +C ++ VLT C +FC CIR+Y+ +S+C Sbjct: 19 TIPELADLDSLLRCHICKDMLQTPVLTQ--CGHTFCSLCIREYLNKESRC 66
>COP1_PEA (P93471) Ubiquitin ligase protein COP1 (EC 6.3.2.-) (Constitutive| photomorphogenesis protein 1) Length = 672 Score = 40.4 bits (93), Expect = 0.002 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 1/84 (1%) Frame = +1 Query: 97 VSEVDDLPAELHCQLCNKVMADAVLTSKCCFVSFCDKCIRDYIITQSKC-ICGVKVLADS 273 V + DL + C +C +++ DA LT+ C SFC CI ++ +S C CG + + Sbjct: 35 VPTMSDLDKDFLCPICMQIIKDAFLTA--CGHSFCYMCIITHLRNKSDCPCCGHYLTNSN 92 Query: 274 LIPNPTVRSTISNLLGTRTCSTAS 345 L PN + + + TAS Sbjct: 93 LFPNFLLDKLLKKTSDRQISKTAS 116
>RAD18_CANGA (Q6FPI4) Postreplication repair ubiquitin-protein ligase E3 RAD18| (EC 6.-.-.-) Length = 411 Score = 39.7 bits (91), Expect = 0.004 Identities = 21/61 (34%), Positives = 33/61 (54%) Frame = +1 Query: 97 VSEVDDLPAELHCQLCNKVMADAVLTSKCCFVSFCDKCIRDYIITQSKCICGVKVLADSL 276 + E+DDL L C +C + + VLT C +FC CIR Y+ + KC + L +S+ Sbjct: 18 LQELDDL---LRCHICKDFLKNPVLTP--CGHTFCSLCIRGYLSNEPKCPLCLHELRESM 72 Query: 277 I 279 + Sbjct: 73 L 73
>MPE1_YEAST (P35728) Protein MPE1| Length = 441 Score = 39.3 bits (90), Expect = 0.005 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 4/73 (5%) Frame = +1 Query: 112 DLPAELHCQLCNKVMADAVLTSKCCFVSFCDKCIRDYIITQSKCIC----GVKVLADSLI 279 DLP +L C L ++ V TSKCC + F + + + ++ +S +C +L DSL+ Sbjct: 283 DLPDDLKCPLTGGLLRQPVKTSKCCNIDFSKEALENALV-ESDFVCPNCETRDILLDSLV 341 Query: 280 PNPTVRSTISNLL 318 P+ + L Sbjct: 342 PDQDKEKEVETFL 354
>BRE1A_MOUSE (Q5DTM8) Ubiquitin-protein ligase BRE1A (EC 6.3.2.-) (BRE1-A) (RING| finger protein 20) Length = 973 Score = 38.5 bits (88), Expect = 0.008 Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Frame = +1 Query: 97 VSEVDDLPAELHCQLCNKVMADAVLTSKCCFVSFCDKCIRD-YIITQSKC 243 + E+ D A L C CN DAVLT CF FC +C++ Y Q KC Sbjct: 908 MEEIKDYKARLTCPCCNMRKKDAVLTK--CFHVFCFECVKTRYDTRQRKC 955
>BRE1A_HUMAN (Q5VTR2) Ubiquitin-protein ligase BRE1A (EC 6.3.2.-) (BRE1-A) (RING| finger protein 20) Length = 975 Score = 38.5 bits (88), Expect = 0.008 Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Frame = +1 Query: 97 VSEVDDLPAELHCQLCNKVMADAVLTSKCCFVSFCDKCIRD-YIITQSKC 243 + E+ D A L C CN DAVLT CF FC +C++ Y Q KC Sbjct: 910 MEEIKDYKARLTCPCCNMRKKDAVLTK--CFHVFCFECVKTRYDTRQRKC 957
>RAD18_ASPFU (Q4WZJ6) Postreplication repair ubiquitin-protein ligase E3 rad18| (EC 6.-.-.-) Length = 418 Score = 38.5 bits (88), Expect = 0.008 Identities = 19/49 (38%), Positives = 27/49 (55%) Frame = +1 Query: 97 VSEVDDLPAELHCQLCNKVMADAVLTSKCCFVSFCDKCIRDYIITQSKC 243 +S V L + L CQ+C + V+TS C +FC CIR + T+ KC Sbjct: 18 LSLVSPLESSLRCQVCKDFFDNPVITS--CSHTFCSLCIRRCLSTEGKC 64
>BRE1A_CHICK (Q5ZLS3) Ubiquitin-protein ligase BRE1A (EC 6.3.2.-) (BRE1-A) (RING| finger protein 20) Length = 984 Score = 38.5 bits (88), Expect = 0.008 Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Frame = +1 Query: 97 VSEVDDLPAELHCQLCNKVMADAVLTSKCCFVSFCDKCIRD-YIITQSKC 243 + E+ D A L C CN DAVLT CF FC +C++ Y Q KC Sbjct: 919 MEEIKDYKARLTCPCCNMRKKDAVLTK--CFHVFCFECVKTRYDTRQRKC 966
>BRE1B_PONPY (Q5RAU7) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-) (BRE1-B) (RING| finger protein 40) Length = 1001 Score = 37.7 bits (86), Expect = 0.014 Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Frame = +1 Query: 103 EVDDLPAELHCQLCNKVMADAVLTSKCCFVSFCDKCIRD-YIITQSKC 243 E+ + A L C CN DAVLT CF FC +C+R Y Q KC Sbjct: 938 EIKEYKARLTCPCCNTRKKDAVLTK--CFHVFCFECVRGRYEARQRKC 983
>BRE1B_MOUSE (Q3U319) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-) (BRE1-B) (RING| finger protein 40) Length = 1001 Score = 37.7 bits (86), Expect = 0.014 Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Frame = +1 Query: 103 EVDDLPAELHCQLCNKVMADAVLTSKCCFVSFCDKCIRD-YIITQSKC 243 E+ + A L C CN DAVLT CF FC +C+R Y Q KC Sbjct: 938 EIKEYKARLTCPCCNTRKKDAVLTK--CFHVFCFECVRGRYEARQRKC 983
>BRE1B_MACFA (Q4R7K7) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-) (BRE1-B) (RING| finger protein 40) Length = 1001 Score = 37.7 bits (86), Expect = 0.014 Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Frame = +1 Query: 103 EVDDLPAELHCQLCNKVMADAVLTSKCCFVSFCDKCIRD-YIITQSKC 243 E+ + A L C CN DAVLT CF FC +C+R Y Q KC Sbjct: 938 EIKEYKARLTCPCCNTRKKDAVLTK--CFHVFCFECVRGRYEARQRKC 983
>BRE1B_HUMAN (O75150) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-) (BRE1-B) (RING| finger protein 40) (95 kDa retinoblastoma-associated protein) (RBP95) Length = 1001 Score = 37.7 bits (86), Expect = 0.014 Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Frame = +1 Query: 103 EVDDLPAELHCQLCNKVMADAVLTSKCCFVSFCDKCIRD-YIITQSKC 243 E+ + A L C CN DAVLT CF FC +C+R Y Q KC Sbjct: 938 EIKEYKARLTCPCCNTRKKDAVLTK--CFHVFCFECVRGRYEARQRKC 983
>BRE1B_RAT (Q8CJB9) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-) (BRE1-B) (RING| finger protein 40) (Syntaxin-1-interacting RING finger protein) (Protein staring) Length = 1002 Score = 37.7 bits (86), Expect = 0.014 Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Frame = +1 Query: 103 EVDDLPAELHCQLCNKVMADAVLTSKCCFVSFCDKCIRD-YIITQSKC 243 E+ + A L C CN DAVLT CF FC +C+R Y Q KC Sbjct: 939 EIKEYKARLTCPCCNTRKKDAVLTK--CFHVFCFECVRGRYEARQRKC 984
>RAD18_DEBHA (Q6BLM3) Postreplication repair ubiquitin-protein ligase E3 RAD18| (EC 6.-.-.-) Length = 491 Score = 37.4 bits (85), Expect = 0.018 Identities = 18/50 (36%), Positives = 28/50 (56%) Frame = +1 Query: 94 SVSEVDDLPAELHCQLCNKVMADAVLTSKCCFVSFCDKCIRDYIITQSKC 243 ++ E+D L C +C + + V+TS C +FC CIR+Y+I S C Sbjct: 26 NLKELDSLQ---RCYICKEFLKAPVITS--CNHTFCSHCIREYLIVNSHC 70
>RNF8_HUMAN (O76064) Ubiquitin ligase protein RNF8 (EC 6.3.2.-) (RING finger| protein 8) Length = 485 Score = 35.4 bits (80), Expect = 0.067 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 3/72 (4%) Frame = +1 Query: 109 DDLPAELHCQLCNKVMADAVLTSKCCFVSFCDKCIRDYIITQSKC-IC--GVKVLADSLI 279 D L EL C +C++ +AV + C SFC CI +++ + +C IC +K SL+ Sbjct: 395 DVLENELQCIICSEYFIEAVTLN--CAHSFCSYCINEWMKRKIECPICRKDIKSKTYSLV 452 Query: 280 PNPTVRSTISNL 315 + + ++NL Sbjct: 453 LDNCINKMVNNL 464
>PZRN3_HUMAN (Q9UPQ7) PDZ domain-containing RING finger protein 3 (Ligand of| Numb-protein X 3) (Semaphorin cytoplasmic domain-associated protein 3) (SEMACAP3 protein) Length = 1066 Score = 35.0 bits (79), Expect = 0.088 Identities = 16/44 (36%), Positives = 26/44 (59%) Frame = +1 Query: 112 DLPAELHCQLCNKVMADAVLTSKCCFVSFCDKCIRDYIITQSKC 243 D+ +L C LC+KV+ D LT+ C V FC C+ +++ + C Sbjct: 11 DVDPDLKCALCHKVLEDP-LTTPCGHV-FCAGCVLPWVVQEGSC 52
>PZRN3_MOUSE (Q69ZS0) PDZ domain-containing RING finger protein 3 (Semaphorin| cytoplasmic domain-associated protein 3) (SEMACAP3 protein) Length = 1063 Score = 35.0 bits (79), Expect = 0.088 Identities = 16/44 (36%), Positives = 26/44 (59%) Frame = +1 Query: 112 DLPAELHCQLCNKVMADAVLTSKCCFVSFCDKCIRDYIITQSKC 243 D+ +L C LC+KV+ D LT+ C V FC C+ +++ + C Sbjct: 11 DVDPDLKCALCHKVLEDP-LTTPCGHV-FCAGCVLPWVVQEGSC 52
>RAD18_EMENI (Q02398) Postreplication repair ubiquitin-protein ligase E3 rad18| (EC 6.-.-.-) Length = 443 Score = 35.0 bits (79), Expect = 0.088 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = +1 Query: 127 LHCQLCNKVMADAVLTSKCCFVSFCDKCIRDYIITQSKC 243 L CQ+C + V+TS C +FC CIR + T+ KC Sbjct: 28 LRCQVCKDFFDNPVITS--CSHTFCSLCIRRCLSTEGKC 64
>PCGF4_HUMAN (P35226) Polycomb group RING finger protein 4 (Polycomb complex| protein BMI-1) (RING finger protein 51) Length = 326 Score = 34.7 bits (78), Expect = 0.11 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%) Frame = +1 Query: 103 EVDDLPAELHCQLCNKVMADAVLTSKCCFVSFCDKCIRDYIITQSKC-ICGVKV 261 ++ +L L C LC DA +C SFC CI Y+ T C IC V+V Sbjct: 8 KITELNPHLMCVLCGGYFIDATTIIECLH-SFCKTCIVRYLETSKYCPICDVQV 60
>PCGF4_FELCA (Q9TST0) Polycomb group RING finger protein 4 (Polycomb complex| protein BMI-1) Length = 326 Score = 34.7 bits (78), Expect = 0.11 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%) Frame = +1 Query: 103 EVDDLPAELHCQLCNKVMADAVLTSKCCFVSFCDKCIRDYIITQSKC-ICGVKV 261 ++ +L L C LC DA +C SFC CI Y+ T C IC V+V Sbjct: 8 KITELNPHLMCVLCGGYFIDATTIIECLH-SFCKTCIVRYLETSKYCPICDVQV 60
>PCGF4_MOUSE (P25916) Polycomb group RING finger protein 4 (Polycomb complex| protein BMI-1) Length = 324 Score = 34.7 bits (78), Expect = 0.11 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%) Frame = +1 Query: 103 EVDDLPAELHCQLCNKVMADAVLTSKCCFVSFCDKCIRDYIITQSKC-ICGVKV 261 ++ +L L C LC DA +C SFC CI Y+ T C IC V+V Sbjct: 8 KITELNPHLMCVLCGGYFIDATTIIECLH-SFCKTCIVRYLETSKYCPICDVQV 60
>RAD18_CANAL (Q5A4N5) Postreplication repair ubiquitin-protein ligase E3 RAD18| (EC 6.-.-.-) Length = 378 Score = 34.3 bits (77), Expect = 0.15 Identities = 18/79 (22%), Positives = 40/79 (50%), Gaps = 1/79 (1%) Frame = +1 Query: 94 SVSEVDDLPAELHCQLCNKVMADAVLTSKCCFVSFCDKCIRDYIITQSKC-ICGVKVLAD 270 +++E+D L C +C ++ V T C ++C +CIR++++ ++C +C +V Sbjct: 19 ALAELDILK---RCYICKDLLNAPVRTQ--CDHTYCSQCIREFLLRDNRCPLCKTEVFES 73 Query: 271 SLIPNPTVRSTISNLLGTR 327 L +P + + + R Sbjct: 74 GLKRDPLLEEIVISYASLR 92
>RAD18_SCHPO (O74747) Postreplication repair ubiquitin-protein ligase E3 rad18| (EC 6.-.-.-) (RAD18 homolog) Length = 387 Score = 33.9 bits (76), Expect = 0.20 Identities = 15/49 (30%), Positives = 25/49 (51%) Frame = +1 Query: 97 VSEVDDLPAELHCQLCNKVMADAVLTSKCCFVSFCDKCIRDYIITQSKC 243 + + L + L C +C++ ++TS C +FC CIRDY+ C Sbjct: 17 IPSLKGLDSSLRCLICHEYFRAPLITS--CSHTFCSFCIRDYLREHPMC 63
>RNF8_MOUSE (Q8VC56) Ubiquitin ligase protein RNF8 (EC 6.3.2.-) (RING finger| protein 8) (AIP37) (ActA-interacting protein 37) (LaXp180) Length = 488 Score = 33.9 bits (76), Expect = 0.20 Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 3/72 (4%) Frame = +1 Query: 109 DDLPAELHCQLCNKVMADAVLTSKCCFVSFCDKCIRDYIITQSKC-IC--GVKVLADSLI 279 D L EL C +C++ +AV + C SFC CI +++ + +C IC ++ +SL+ Sbjct: 398 DLLENELQCIICSEYFIEAVTLN--CAHSFCSFCINEWMKRKVECPICRKDIESRTNSLV 455 Query: 280 PNPTVRSTISNL 315 + + + NL Sbjct: 456 LDNCISKMVDNL 467
>PCGF2_HUMAN (P35227) Polycomb group RING finger protein 2 (DNA-binding protein| Mel-18) (RING finger protein 110) (Zinc finger protein 144) Length = 344 Score = 33.9 bits (76), Expect = 0.20 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%) Frame = +1 Query: 103 EVDDLPAELHCQLCNKVMADAVLTSKCCFVSFCDKCIRDYIITQSKC-ICGVKV 261 ++ +L L C LC DA +C SFC CI Y+ T C +C V+V Sbjct: 8 KITELNPHLMCALCGGYFIDATTIVECLH-SFCKTCIVRYLETNKYCPMCDVQV 60
>PCGF2_MOUSE (P23798) Polycomb group RING finger protein 2 (DNA-binding protein| Mel-18) (RING finger protein 110) (Zinc finger protein 144) (Zfp-144) Length = 342 Score = 33.9 bits (76), Expect = 0.20 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%) Frame = +1 Query: 103 EVDDLPAELHCQLCNKVMADAVLTSKCCFVSFCDKCIRDYIITQSKC-ICGVKV 261 ++ +L L C LC DA +C SFC CI Y+ T C +C V+V Sbjct: 8 KITELNPHLMCALCGGYFIDATTIVECLH-SFCKTCIVRYLETNKYCPMCDVQV 60
>DFR10_MOUSE (Q64263) Defensin-related cryptdin, related sequence 10 precursor| (Cryptdin-related protein 4C-4) (CRS4C) Length = 91 Score = 33.9 bits (76), Expect = 0.20 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%) Frame = +3 Query: 30 CCPCRTAESC*WHPIC-TCPSCIC 98 C PC + SC W P+C CPSC C Sbjct: 65 CPPCPSCPSCPWCPMCPRCPSCKC 88
>RAD18_MOUSE (Q9QXK2) Postreplication repair protein RAD18 (mRAD18Sc)| Length = 509 Score = 33.5 bits (75), Expect = 0.26 Identities = 34/136 (25%), Positives = 54/136 (39%), Gaps = 17/136 (12%) Frame = +1 Query: 91 ASVSEVDDLPAELHCQLCNKVMADAVLTSKCCFVSFCDKCIRDYIITQSKC-ICGVKVLA 267 A + +DDL L C +C + AV+ +C ++C CIR ++ +++C C V V Sbjct: 14 AVMKTIDDL---LRCGICFEYFNIAVIIPQCSH-NYCSLCIRKFLSYKTQCPTCCVAVTE 69 Query: 268 DSLIPNPTVRSTISNLLGTRT-----------CSTASGTGKHRSSSGSNADP-----KSQ 399 L N + + ++ RT S S T K NAD K Sbjct: 70 PDLRNNRLLDELVKSMNFARTHLLQFALESPPISPVSSTSKKVVVKVHNADAAQHPVKQA 129 Query: 400 SHTTSAALERDTKQCL 447 + L R+T C+ Sbjct: 130 NRLMDKFLIRETGDCV 145
>PZRN3_RAT (P68907) PDZ domain-containing RING finger protein 3 (Semaphorin| cytoplasmic domain-associated protein 3) (SEMACAP3 protein) Length = 1062 Score = 33.5 bits (75), Expect = 0.26 Identities = 15/44 (34%), Positives = 26/44 (59%) Frame = +1 Query: 112 DLPAELHCQLCNKVMADAVLTSKCCFVSFCDKCIRDYIITQSKC 243 ++ +L C LC+KV+ D LT+ C V FC C+ +++ + C Sbjct: 11 EVDPDLKCALCHKVLEDP-LTTPCGHV-FCAGCVLPWVVQEGSC 52
>NF7O_XENLA (Q91431) Nuclear factor 7, ovary (xNF7-O)| Length = 610 Score = 33.1 bits (74), Expect = 0.33 Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 1/91 (1%) Frame = +1 Query: 88 AASVSEVDDLPAELHCQLCNKVMADAVLTSKCCFVSFCDKCIRDYIITQSKCICGVKVLA 267 AAS+ D EL C LC ++ D V+ + C +FC CI QS C Sbjct: 131 AASLGAAGDFAEELTCPLCVELFKDPVMVA--CGHNFCRSCIDKVWEGQSSFAC--PECK 186 Query: 268 DSLIPNP-TVRSTISNLLGTRTCSTASGTGK 357 +S+ T+ ++NL C+ + K Sbjct: 187 ESITDRKYTINRVLANLAKKAACTPVTPVEK 217
>YIN3_SCHPO (O13960) Hypothetical protein C1705.03c precursor| Length = 421 Score = 33.1 bits (74), Expect = 0.33 Identities = 22/68 (32%), Positives = 30/68 (44%) Frame = +1 Query: 217 DYIITQSKCICGVKVLADSLIPNPTVRSTISNLLGTRTCSTASGTGKHRSSSGSNADPKS 396 D +I C V S + + ST+S G+ T +T S T SS S + S Sbjct: 333 DSVIKGDDFTCQGSVATISATSSYDLSSTVSATSGSATSATGSATTTSYSSDSSASSSSS 392 Query: 397 QSHTTSAA 420 SH +SAA Sbjct: 393 SSHESSAA 400
>GIMA5_MOUSE (Q8BWF2) GTPase, IMAP family member 5 (Immunity-associated| nucleotide 4-like 1 protein) (Immunity-associated protein 3) Length = 308 Score = 32.7 bits (73), Expect = 0.44 Identities = 20/79 (25%), Positives = 35/79 (44%) Frame = +1 Query: 208 CIRDYIITQSKCICGVKVLADSLIPNPTVRSTISNLLGTRTCSTASGTGKHRSSSGSNAD 387 C+R I+ K CG +S++ P +S + TRT +GT + RS + Sbjct: 26 CLR--ILLVGKSGCGKSATGNSILRRPAFQSRLRGQSVTRTSQAETGTWEGRSILVVDTP 83 Query: 388 PKSQSHTTSAALERDTKQC 444 P +S + +++D C Sbjct: 84 PIFESKAQNQDMDKDIGDC 102
>TRIM9_RAT (Q91ZY8) Tripartite motif protein 9 (SNAP-25-interacting RING| finger protein) Length = 710 Score = 32.3 bits (72), Expect = 0.57 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = +1 Query: 121 AELHCQLCNKVMADAVLTSKCCFVSFCDKC 210 A L CQLC K +A + + C V +CD C Sbjct: 164 AALKCQLCEKAPKEATVMCEQCDVFYCDPC 193
>TRIM9_HUMAN (Q9C026) Tripartite motif protein 9 (RING finger protein 91)| Length = 710 Score = 32.3 bits (72), Expect = 0.57 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = +1 Query: 121 AELHCQLCNKVMADAVLTSKCCFVSFCDKC 210 A L CQLC K +A + + C V +CD C Sbjct: 164 AALKCQLCEKAPKEATVMCEQCDVFYCDPC 193
>TRIM9_MOUSE (Q8C7M3) Tripartite motif protein 9| Length = 817 Score = 32.3 bits (72), Expect = 0.57 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = +1 Query: 121 AELHCQLCNKVMADAVLTSKCCFVSFCDKC 210 A L CQLC K +A + + C V +CD C Sbjct: 164 AALKCQLCEKAPKEATVMCEQCDVFYCDPC 193
>TRI18_RAT (P82458) Midline-1 (Tripartite motif protein 18)| Length = 667 Score = 32.0 bits (71), Expect = 0.74 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%) Frame = +1 Query: 133 CQLCNKVMA-DAVLTSKCCFVSFCDKCIR 216 CQ C++ A DAV T C VS+CD+C++ Sbjct: 119 CQFCDQDPAQDAVKTCVTCEVSYCDECLK 147
>TRI18_MUSSP (P82457) Midline-1 (Tripartite motif protein 18)| Length = 667 Score = 32.0 bits (71), Expect = 0.74 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%) Frame = +1 Query: 133 CQLCNKVMA-DAVLTSKCCFVSFCDKCIR 216 CQ C++ A DAV T C VS+CD+C++ Sbjct: 119 CQFCDQDPAQDAVKTCVTCEVSYCDECLK 147
>TRI18_HUMAN (O15344) Midline-1 (EC 6.3.2.-) (Tripartite motif protein 18)| (Putative transcription factor XPRF) (Midin) (RING finger protein 59) (Midline 1 RING finger protein) Length = 667 Score = 32.0 bits (71), Expect = 0.74 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%) Frame = +1 Query: 133 CQLCNKVMA-DAVLTSKCCFVSFCDKCIR 216 CQ C++ A DAV T C VS+CD+C++ Sbjct: 119 CQFCDQDPAQDAVKTCVTCEVSYCDECLK 147
>RAD18_YEAST (P10862) Postreplication repair ubiquitin-protein ligase E3 RAD18| (EC 6.-.-.-) (Radiation sensitivity protein 18) Length = 487 Score = 32.0 bits (71), Expect = 0.74 Identities = 20/71 (28%), Positives = 32/71 (45%) Frame = +1 Query: 94 SVSEVDDLPAELHCQLCNKVMADAVLTSKCCFVSFCDKCIRDYIITQSKCICGVKVLADS 273 S+ + L L C +C + VLT C +FC CIR ++ Q C + +S Sbjct: 15 SIPSLYQLDTLLRCHICKDFLKVPVLTP--CGHTFCSLCIRTHLNNQPNCPLCLFEFRES 72 Query: 274 LIPNPTVRSTI 306 L+ + + S I Sbjct: 73 LLRSEFLVSEI 83
>RNG2B_XENLA (Q7ZWM8) Ubiquitin ligase protein RING2-B (EC 6.3.2.-) (RING finger| protein 2-B) (RING finger protein 1B-B) (RING1b-B) Length = 343 Score = 32.0 bits (71), Expect = 0.74 Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 3/93 (3%) Frame = +1 Query: 58 VDGILSALAPAASVSEVDDLPAELHCQLCNKVMADAVLTSKCCFVSFCDKCIRDYIITQS 237 +DG A++P + L +EL C +C ++ + +T+K C FC CI + + + Sbjct: 29 MDGTEIAVSPRS-------LHSELMCPICLDMLKNT-MTTKECLHRFCSDCIVTALRSGN 80 Query: 238 K-C-ICGVKVLAD-SLIPNPTVRSTISNLLGTR 327 K C C K+++ SL P+P + IS + +R Sbjct: 81 KECPTCRKKLVSKRSLRPDPNFDALISKIYPSR 113
>GIMA3_MOUSE (Q99MI6) GTPase, IMAP family member 3 (Immunity-associated| nucleotide 4 protein) Length = 301 Score = 32.0 bits (71), Expect = 0.74 Identities = 19/74 (25%), Positives = 31/74 (41%) Frame = +1 Query: 223 IITQSKCICGVKVLADSLIPNPTVRSTISNLLGTRTCSTASGTGKHRSSSGSNADPKSQS 402 I+ K CG +SL+ P S + TRT +GT + RS + P +S Sbjct: 25 ILLVGKSGCGKSATGNSLLRRPAFESRLRGQSVTRTSQAETGTWEGRSILVVDTPPIFES 84 Query: 403 HTTSAALERDTKQC 444 + +++D C Sbjct: 85 KAQNQDMDKDIGDC 98
>ZAN_MOUSE (O88799) Zonadhesin precursor| Length = 5376 Score = 32.0 bits (71), Expect = 0.74 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 8/48 (16%) Frame = +1 Query: 25 RPVAPVVPLNPVDGILS--------ALAPAASVSEVDDLPAELHCQLC 144 RP P PL P+ +LS +LAP VS + P H +LC Sbjct: 1133 RPPCPSPPLMPIGPLLSKPPGVSMFSLAPTTGVSTTESCPPNAHIELC 1180
>RING1_RAT (Q6MGB6) Polycomb complex protein RING1 (RING finger protein 1)| Length = 406 Score = 32.0 bits (71), Expect = 0.74 Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 3/93 (3%) Frame = +1 Query: 58 VDGILSALAPAASVSEVDDLPAELHCQLCNKVMADAVLTSKCCFVSFCDKCIRDYIITQS 237 +DG A++P + L +EL C +C ++ + +T+K C FC CI + + + Sbjct: 30 MDGTEIAVSPRS-------LHSELMCPICLDMLKNT-MTTKECLHRFCSDCIVTALRSGN 81 Query: 238 K-C-ICGVKVLAD-SLIPNPTVRSTISNLLGTR 327 K C C K+++ SL P+P + IS + +R Sbjct: 82 KECPTCRKKLVSKRSLRPDPNFDALISKIYPSR 114
>RING1_MOUSE (O35730) Polycomb complex protein RING1 (RING finger protein 1)| (Transcription repressor Ring1A) Length = 406 Score = 32.0 bits (71), Expect = 0.74 Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 3/93 (3%) Frame = +1 Query: 58 VDGILSALAPAASVSEVDDLPAELHCQLCNKVMADAVLTSKCCFVSFCDKCIRDYIITQS 237 +DG A++P + L +EL C +C ++ + +T+K C FC CI + + + Sbjct: 30 MDGTEIAVSPRS-------LHSELMCPICLDMLKNT-MTTKECLHRFCSDCIVTALRSGN 81 Query: 238 K-C-ICGVKVLAD-SLIPNPTVRSTISNLLGTR 327 K C C K+++ SL P+P + IS + +R Sbjct: 82 KECPTCRKKLVSKRSLRPDPNFDALISKIYPSR 114
>RING1_HUMAN (Q06587) Polycomb complex protein RING1 (RING finger protein 1)| Length = 406 Score = 32.0 bits (71), Expect = 0.74 Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 3/93 (3%) Frame = +1 Query: 58 VDGILSALAPAASVSEVDDLPAELHCQLCNKVMADAVLTSKCCFVSFCDKCIRDYIITQS 237 +DG A++P + L +EL C +C ++ + +T+K C FC CI + + + Sbjct: 30 MDGTEIAVSPRS-------LHSELMCPICLDMLKNT-MTTKECLHRFCSDCIVTALRSGN 81 Query: 238 K-C-ICGVKVLAD-SLIPNPTVRSTISNLLGTR 327 K C C K+++ SL P+P + IS + +R Sbjct: 82 KECPTCRKKLVSKRSLRPDPNFDALISKIYPSR 114
>RING1_CANFA (Q5TJF3) Ubiquitin ligase protein RING1 (EC 6.3.2.-) (RING finger| protein 1) (RING1a) Length = 406 Score = 32.0 bits (71), Expect = 0.74 Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 3/93 (3%) Frame = +1 Query: 58 VDGILSALAPAASVSEVDDLPAELHCQLCNKVMADAVLTSKCCFVSFCDKCIRDYIITQS 237 +DG A++P + L +EL C +C ++ + +T+K C FC CI + + + Sbjct: 30 MDGTEIAVSPRS-------LHSELMCPICLDMLKNT-MTTKECLHRFCSDCIVTALRSGN 81 Query: 238 K-C-ICGVKVLAD-SLIPNPTVRSTISNLLGTR 327 K C C K+++ SL P+P + IS + +R Sbjct: 82 KECPTCRKKLVSKRSLRPDPNFDALISKIYPSR 114
>TRI18_MOUSE (O70583) Midline-1 (EC 6.3.2.-) (Tripartite motif protein 18)| (Midin) Length = 680 Score = 32.0 bits (71), Expect = 0.74 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%) Frame = +1 Query: 133 CQLCNKVMA-DAVLTSKCCFVSFCDKCIR 216 CQ C++ A DAV T C VS+CD+C++ Sbjct: 119 CQFCDQDPAQDAVKTCVTCEVSYCDECLK 147
>RNG2A_XENLA (Q66J69) Ubiquitin ligase protein RING2-A (EC 6.3.2.-) (RING finger| protein 2-A) (RING finger protein 1B-A) (RING1b-A) Length = 344 Score = 32.0 bits (71), Expect = 0.74 Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 3/93 (3%) Frame = +1 Query: 58 VDGILSALAPAASVSEVDDLPAELHCQLCNKVMADAVLTSKCCFVSFCDKCIRDYIITQS 237 +DG A++P + L +EL C +C ++ + +T+K C FC CI + + + Sbjct: 30 MDGTEIAVSPRS-------LHSELMCPICLDMLKNT-MTTKECLHRFCSDCIVTALRSGN 81 Query: 238 K-C-ICGVKVLAD-SLIPNPTVRSTISNLLGTR 327 K C C K+++ SL P+P + IS + +R Sbjct: 82 KECPTCRKKLVSKRSLRPDPNFDALISKIYPSR 114
>RING1_MACMU (Q8WMN5) Polycomb complex protein RING1 (RING finger protein 1)| Length = 377 Score = 32.0 bits (71), Expect = 0.74 Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 3/93 (3%) Frame = +1 Query: 58 VDGILSALAPAASVSEVDDLPAELHCQLCNKVMADAVLTSKCCFVSFCDKCIRDYIITQS 237 +DG A++P + L +EL C +C ++ + +T+K C FC CI + + + Sbjct: 1 MDGTEIAVSPRS-------LHSELMCPICLDMLKNT-MTTKECLHRFCSDCIVTALRSGN 52 Query: 238 K-C-ICGVKVLAD-SLIPNPTVRSTISNLLGTR 327 K C C K+++ SL P+P + IS + +R Sbjct: 53 KECPTCRKKLVSKRSLRPDPNFDALISKIYPSR 85
>RAD18_YARLI (Q6CHI1) Postreplication repair ubiquitin-protein ligase E3 RAD18| (EC 6.-.-.-) Length = 344 Score = 32.0 bits (71), Expect = 0.74 Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 2/81 (2%) Frame = +1 Query: 91 ASVSEVDDLPAELHCQLCNKVMADAVLTSKCCFVSFCDKCIRDYII-TQSKC-ICGVKVL 264 + +S + D+ L C +C + ++T C +FC CI+ Y+ T +C C + Sbjct: 14 SKLSGLKDVDETLRCHICKEFFTAPMITG--CGHTFCSLCIQRYLTNTSQRCPTCMQEQQ 71 Query: 265 ADSLIPNPTVRSTISNLLGTR 327 L N TV + + + R Sbjct: 72 ISQLRKNVTVETLVEHFSAQR 92
>BRE1_YARLI (Q6CF78) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)| Length = 700 Score = 31.6 bits (70), Expect = 0.97 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = +1 Query: 94 SVSEVDDLPAELHCQLCNKVMADAVLTSKCCFVSFCDKCIRD 219 S E+D+L + C LC+K D L K C FC +C +D Sbjct: 635 SSDEIDELRSIAMCSLCSKNWKDTAL--KVCGHVFCHQCAQD 674
>TRIM2_HUMAN (Q9C040) Tripartite motif protein 2 (RING finger protein 86)| Length = 744 Score = 31.6 bits (70), Expect = 0.97 Identities = 21/87 (24%), Positives = 34/87 (39%) Frame = +1 Query: 184 CFVSFCDKCIRDYIITQSKCICGVKVLADSLIPNPTVRSTISNLLGTRTCSTASGTGKHR 363 C +FC++C+++YI S + S++P V + +N T T Sbjct: 38 CLHTFCERCLQNYIPAHSLTLSCPVCRQTSILPEKGVAALQNNFFITNLMDVLQRT---- 93 Query: 364 SSSGSNADPKSQSHTTSAALERDTKQC 444 GSNA+ S T +A C Sbjct: 94 --PGSNAEESSILETVTAVAAGKPLSC 118
>TRAF4_MOUSE (Q61382) TNF receptor-associated factor 4 (Cysteine-rich motif| associated to RING and Traf domains protein 1) Length = 470 Score = 31.2 bits (69), Expect = 1.3 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = +1 Query: 127 LHCQLCNKVMADAVLTSKCCFVSFCDKCIRDYI 225 L C LC K M D+V S C +CD C+++++ Sbjct: 16 LLCPLCGKPMRDSVEVSTCGH-RYCDNCLQEFL 47
>RFWD2_HUMAN (Q8NHY2) Ring finger and WD repeat domain protein 2 (EC 6.3.2.-)| (Ubiquitin-protein ligase COP1) (Constitutive photomorphogenesis protein 1 homolog) (hCOP1) Length = 731 Score = 31.2 bits (69), Expect = 1.3 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 4/80 (5%) Frame = +1 Query: 79 LAPAAS--VSEVDDLPAELHCQLCNKVMADAVLTSKCCFVSFCDKCIRDYIITQSKC-IC 249 LAP + ++ +D + C +C ++ +A +T C SFC KCI + ++C C Sbjct: 116 LAPLCNGLINSYEDKSNDFVCPICFDMIEEAYMTK--CGHSFCYKCIHQSLEDNNRCPKC 173 Query: 250 GVKV-LADSLIPNPTVRSTI 306 V D L PN V I Sbjct: 174 NYVVDNIDHLYPNFLVNELI 193
>TRIM1_MOUSE (Q9QUS6) Midline-2 (Midline defect 2) (Tripartite motif protein 1)| Length = 685 Score = 31.2 bits (69), Expect = 1.3 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%) Frame = +1 Query: 133 CQLCNK-VMADAVLTSKCCFVSFCDKCIR 216 CQ C + DAV T C VS+CD+C+R Sbjct: 119 CQFCEQDPPRDAVKTCITCEVSYCDRCLR 147
>TRIM1_HUMAN (Q9UJV3) Midline-2 (Midline defect 2) (Tripartite motif protein 1)| (Midin-2) (RING finger protein 60) Length = 715 Score = 31.2 bits (69), Expect = 1.3 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%) Frame = +1 Query: 133 CQLCNK-VMADAVLTSKCCFVSFCDKCIR 216 CQ C + DAV T C VS+CD+C+R Sbjct: 119 CQFCEQDPPRDAVKTCITCEVSYCDRCLR 147
>IBRD2_MOUSE (Q8BKD6) E3 ubiquitin ligase IBRDC2 (EC 6.3.2.-) (IBR| domain-containing protein 2) Length = 301 Score = 30.8 bits (68), Expect = 1.7 Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 2/79 (2%) Frame = +1 Query: 49 LNPVDGILSALAPAASVSEVDDLPAEL-HCQLCN-KVMADAVLTSKCCFVSFCDKCIRDY 222 ++ VDG+ A + D +PA L C+LC + D + + C FC C++ Y Sbjct: 1 MDSVDGLQCLTMTAENPPSGDLIPAPLVTCKLCLCEQSLDKMTMLQECQCIFCTPCLKQY 60 Query: 223 IITQSKCICGVKVLADSLI 279 ++ + CG + ++ Sbjct: 61 MVLSIREGCGSPITCPDMV 79
>RN141_BRARE (Q6IV56) RING finger protein 141| Length = 222 Score = 30.8 bits (68), Expect = 1.7 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%) Frame = +1 Query: 97 VSEVDDLPAELHCQLCNKVMADAVLTSKCCFVSFCDKCIRDYIITQSKC-ICGVKVLA 267 + V L E C +C AD +L C SFC KCI + C +C ++V A Sbjct: 135 MGRVKQLTDEEECCICMDGKADLILP---CAHSFCQKCIDKWSGQSRNCPVCRIQVTA 189
>RAD18_HUMAN (Q9NS91) Postreplication repair protein RAD18 (hRAD18) (hHR18)| (RING finger protein 73) Length = 495 Score = 30.8 bits (68), Expect = 1.7 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 1/76 (1%) Frame = +1 Query: 91 ASVSEVDDLPAELHCQLCNKVMADAVLTSKCCFVSFCDKCIRDYIITQSKC-ICGVKVLA 267 A + +DDL L C +C + A++ +C ++C CIR ++ +++C C V V Sbjct: 14 AVMKTIDDL---LRCGICFEYFNIAMIIPQCSH-NYCSLCIRKFLSYKTQCPTCCVTVTE 69 Query: 268 DSLIPNPTVRSTISNL 315 L N + + +L Sbjct: 70 PDLKNNRILDELVKSL 85
>RAD16_YEAST (P31244) DNA repair protein RAD16 (EC 3.6.1.-) (ATP-dependent| helicase RAD16) Length = 790 Score = 30.4 bits (67), Expect = 2.2 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 5/85 (5%) Frame = +1 Query: 133 CQLCNKVMADAVLTSKCCFVSFCDKCIRDYIIT----QSKCICGVKVLADSL-IPNPTVR 297 CQLCN A+ + SKC FC CI++Y+ + +K C V + S+ + P + Sbjct: 537 CQLCNDE-AEEPIESKCHH-KFCRLCIKEYVESFMENNNKLTCPVCHIGLSIDLSQPALE 594 Query: 298 STISNLLGTRTCSTASGTGKHRSSS 372 + + S + +GK +SS+ Sbjct: 595 VDLDSFKKQSIVSRLNMSGKWQSST 619
>TRIM2_MOUSE (Q9ESN6) Tripartite motif protein 2 (Neural activity-related RING| finger protein) Length = 744 Score = 30.0 bits (66), Expect = 2.8 Identities = 20/87 (22%), Positives = 33/87 (37%) Frame = +1 Query: 184 CFVSFCDKCIRDYIITQSKCICGVKVLADSLIPNPTVRSTISNLLGTRTCSTASGTGKHR 363 C +FC++C+++YI S + S++P V + +N T T Sbjct: 38 CLHTFCERCLQNYIPAHSLTLSCPVCRQTSILPEKGVAALQNNFFITNLMDVLQRT---- 93 Query: 364 SSSGSNADPKSQSHTTSAALERDTKQC 444 GSN + S T +A C Sbjct: 94 --PGSNGEDSSILETVTAVAAGKPLSC 118
>PEX10_PICAN (Q00940) Peroxisome assembly protein 10 (Peroxin-10) (Peroxisome| biogenesis factor 10) (Peroxisome assembly protein PER8) Length = 295 Score = 30.0 bits (66), Expect = 2.8 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%) Frame = +1 Query: 133 CQLCNKVMADAVLTSKCCFVSFCDKCIRDYIITQSKC-ICGVKVLADSLIP 282 C LC M D C FC KC+ D++ + +C +C K+ L+P Sbjct: 245 CMLCLSPMKDPSCGE--CGHVFCWKCVLDWVKERQECPLCRAKMRESQLLP 293
>TRAF4_HUMAN (Q9BUZ4) TNF receptor-associated factor 4 (Cysteine-rich domain| associated with RING and Traf domains protein 1) (Malignant 62) (RING finger protein 83) Length = 470 Score = 30.0 bits (66), Expect = 2.8 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = +1 Query: 127 LHCQLCNKVMADAVLTSKCCFVSFCDKCIRDYI 225 L C LC K M + V S C FCD C+++++ Sbjct: 16 LLCPLCGKPMREPVQVSTCGH-RFCDTCLQEFL 47
>YCF4_CHLRE (O20030) Photosystem I assembly protein ycf4| Length = 197 Score = 30.0 bits (66), Expect = 2.8 Identities = 17/38 (44%), Positives = 20/38 (52%) Frame = -2 Query: 294 NCGIWDEGICKYLHSTNALRLCNNVISNTFITETDEAA 181 +CG GIC YL N L L N I TF +ET+ A Sbjct: 32 SCGFLATGICSYLGIPNWLSLLN--IGTTFSSETETLA 67
>GIMA5_RAT (Q8K3L6) GTPase, IMAP family member 5 (Immunity-associated| nucleotide 4-like 1 protein) (Immunity-associated nucleotide 4 protein) Length = 326 Score = 30.0 bits (66), Expect = 2.8 Identities = 18/74 (24%), Positives = 30/74 (40%) Frame = +1 Query: 223 IITQSKCICGVKVLADSLIPNPTVRSTISNLLGTRTCSTASGTGKHRSSSGSNADPKSQS 402 I+ K CG +S++ P S + TRT GT + RS + P +S Sbjct: 47 ILLVGKSGCGKSATGNSILRRPAFESRLRGQSVTRTSQAEMGTWEGRSFLVVDTPPIFES 106 Query: 403 HTTSAALERDTKQC 444 + +++D C Sbjct: 107 KIQNQDMDKDIGNC 120
>DFR12_MOUSE (P50716) Defensin-related cryptdin, related sequence 12 precursor| (Cryptdin-related protein 4C-5) (CRS4C) Length = 91 Score = 30.0 bits (66), Expect = 2.8 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%) Frame = +3 Query: 12 LQNVSSCCPCRTAESC*WHPIC-TCPSCIC 98 ++ C PC + SC W P C CP C C Sbjct: 59 IRRARRCPPCPSCLSCPWCPRCLRCPMCKC 88
>TIM17_SCHPO (P87130) Mitochondrial import inner membrane translocase subunit| tim17 (Mitochondrial protein import protein 2) Length = 164 Score = 29.6 bits (65), Expect = 3.7 Identities = 16/28 (57%), Positives = 19/28 (67%) Frame = +1 Query: 10 NYKMSRPVAPVVPLNPVDGILSALAPAA 93 N + +RPVAPV+P P G SA APAA Sbjct: 137 NAEYNRPVAPVIPDAPASGSTSA-APAA 163
>MES2_CAEEL (O17514) Polycomb protein mes-2 (Maternal-effect sterile protein 2)| (E(z) homolog) Length = 773 Score = 29.6 bits (65), Expect = 3.7 Identities = 14/37 (37%), Positives = 19/37 (51%) Frame = -2 Query: 366 TSVLPCTAGSAASPCS*QIADCASNCGIWDEGICKYL 256 T+V P TA A PC+ A NC + G+C Y+ Sbjct: 523 TAVTPITACRHAGPCN----ATAENCACRENGVCSYM 555
>RAD18_NEUCR (P33288) Postreplication repair ubiquitin-protein ligase E3 rad-18| (EC 6.-.-.-) (UV radiation sensitivity protein 2) Length = 501 Score = 29.6 bits (65), Expect = 3.7 Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 3/74 (4%) Frame = +1 Query: 115 LPAE--LHCQLCNKVMADAVLTSKCCFVSFCDKCIRDYIITQSKC-ICGVKVLADSLIPN 285 +P E C +C +LTS C +FC CIR + SKC +C L N Sbjct: 26 MPVEQAFRCHVCKDFYDSPMLTS--CNHTFCSLCIRRCLSVDSKCPLCRATDQESKLRGN 83 Query: 286 PTVRSTISNLLGTR 327 +R + +R Sbjct: 84 WALRERVEAFKNSR 97
>RFWD2_MOUSE (Q9R1A8) Ring finger and WD repeat domain protein 2 (EC 6.3.2.-)| (Ubiquitin-protein ligase COP1) (Constitutive photomorphogenesis protein 1 homolog) (mCOP1) Length = 733 Score = 29.6 bits (65), Expect = 3.7 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 2/72 (2%) Frame = +1 Query: 97 VSEVDDLPAELHCQLCNKVMADAVLTSKCCFVSFCDKCIRDYIITQSKC-ICGVKV-LAD 270 ++ +D + C +C ++ +A +T C SFC KCI + ++C C V D Sbjct: 126 LNSYEDKSNDFVCPICFDMIEEAYMTK--CGHSFCYKCIHQSLEDNNRCPKCNYVVDNID 183 Query: 271 SLIPNPTVRSTI 306 L PN V I Sbjct: 184 HLYPNFLVNELI 195
>RNF41_XENLA (Q5FWL3) RING finger protein 41| Length = 317 Score = 29.6 bits (65), Expect = 3.7 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 2/79 (2%) Frame = +1 Query: 112 DLPAELHCQLCNKVMADAVLTSKCCFVSFCDKCIRDYIITQSKCICGVKVLADS-LIPNP 288 D+ +L C +C+ V+ + V C +FC+ CI + Q C V+ + L P P Sbjct: 11 DVDEDLICPICSGVLEEPVQAPHCEH-AFCNACITQWFSQQQTCPVDRSVVTVAHLRPVP 69 Query: 289 TV-RSTISNLLGTRTCSTA 342 + R+ +S L TC A Sbjct: 70 RIMRNMLSKL--QITCDNA 86
>RAD5_GIBZE (Q4IJ84) DNA repair protein RAD5 (EC 3.6.1.-)| Length = 1154 Score = 29.3 bits (64), Expect = 4.8 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%) Frame = +1 Query: 121 AELHCQLC-NKVMADAVLTSKCCFVSFCDKCIRDYIITQS 237 AE C LC + M D +T C+ S C KC+ DYI Q+ Sbjct: 896 AENECPLCFEEPMNDQTVTG--CWHSACKKCLLDYIKHQT 933
>RAG1_CHICK (P24271) V(D)J recombination-activating protein 1 (RAG-1)| Length = 1041 Score = 29.3 bits (64), Expect = 4.8 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 4/50 (8%) Frame = +1 Query: 112 DLPAE----LHCQLCNKVMADAVLTSKCCFVSFCDKCIRDYIITQSKCIC 249 D PA+ + CQ+C ++AD V T+ C FC CI I C C Sbjct: 278 DYPADFIKSISCQICEHILADPVETT--CRHLFCRTCILSCIRVMG-CYC 324
>RNF41_MOUSE (Q8BH75) RING finger protein 41| Length = 317 Score = 29.3 bits (64), Expect = 4.8 Identities = 13/44 (29%), Positives = 22/44 (50%) Frame = +1 Query: 112 DLPAELHCQLCNKVMADAVLTSKCCFVSFCDKCIRDYIITQSKC 243 D+ +L C +C+ V+ + V C +FC+ CI + Q C Sbjct: 11 DVDEDLICPICSGVLEEPVQAPHCEH-AFCNACITQWFSQQQTC 53
>RNF41_HUMAN (Q9H4P4) RING finger protein 41| Length = 317 Score = 29.3 bits (64), Expect = 4.8 Identities = 13/44 (29%), Positives = 22/44 (50%) Frame = +1 Query: 112 DLPAELHCQLCNKVMADAVLTSKCCFVSFCDKCIRDYIITQSKC 243 D+ +L C +C+ V+ + V C +FC+ CI + Q C Sbjct: 11 DVDEDLICPICSGVLEEPVQAPHCEH-AFCNACITQWFSQQQTC 53
>TOPRS_HUMAN (Q9NS56) Ubiquitin-protein E3 ligase Topors (EC 6.3.2.-)| (SUMO1-protein E3 ligase Topors) (Topoisomerase I-binding RING finger protein) (Topoisomerase I-binding arginine/serine-rich protein) (Tumor suppressor p53-binding protein 3) (p53-bindi Length = 1045 Score = 29.3 bits (64), Expect = 4.8 Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 16/89 (17%) Frame = +1 Query: 25 RPVAPVVPLNPVDGILSALAPAASVSEVDDL-PAELHCQLCNKVMADAVLTSKC------ 183 R +A P P +A AA ++D+ P +L V ADA SKC Sbjct: 50 RELAASAPARPAPASSEIMASAAKEFKMDNFSPKAGTSKLQQTVPADASPDSKCPICLDR 109 Query: 184 ---------CFVSFCDKCIRDYIITQSKC 243 C FC +C++++ +++C Sbjct: 110 FDNVSYLDRCLHKFCFRCVQEWSKNKAEC 138
>SCW11_YEAST (P53189) Probable family 17 glucosidase SCW11 precursor (EC| 3.2.1.-) (Soluble cell wall protein 11) Length = 542 Score = 28.9 bits (63), Expect = 6.3 Identities = 17/45 (37%), Positives = 23/45 (51%) Frame = +1 Query: 286 PTVRSTISNLLGTRTCSTASGTGKHRSSSGSNADPKSQSHTTSAA 420 PT ST S+ + + ST+S T SSS S++ S S T A Sbjct: 219 PTSSSTSSSTSSSTSSSTSSSTSSSTSSSTSSSTSSSTSSTQETA 263
>RHP16_SCHPO (P79051) DNA repair protein rhp16 (RAD16 homolog)| Length = 861 Score = 28.9 bits (63), Expect = 6.3 Identities = 11/31 (35%), Positives = 20/31 (64%) Frame = +1 Query: 133 CQLCNKVMADAVLTSKCCFVSFCDKCIRDYI 225 C++C++V DA+ + C +FC C+ +YI Sbjct: 609 CKICDEVAQDAIESR--CHHTFCRLCVTEYI 637
>TRIM3_HUMAN (O75382) Tripartite motif protein 3 (RING finger protein 22)| (Brain-expressed RING finger protein) (RING finger protein 97) Length = 744 Score = 28.9 bits (63), Expect = 6.3 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Frame = +1 Query: 127 LHCQLC-NKVMADAVLTSKCCFVSFCDKCIRDYIITQSKCICGVKVLADSLIPNPTVRST 303 L C +C ++ VL C +FC++C+++YI QS + S++P V + Sbjct: 20 LVCSICLDRYQCPKVLP---CLHTFCERCLQNYIPAQSLTLSCPVCRQTSILPEQGVSAL 76 Query: 304 ISN 312 +N Sbjct: 77 QNN 79
>RAD5_YEAST (P32849) DNA repair protein RAD5 (EC 3.6.1.-) (Radiation sensitivity| protein 5) (Revertibility protein 2) Length = 1169 Score = 28.9 bits (63), Expect = 6.3 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%) Frame = +1 Query: 127 LHCQLCNKVMAD---AVLTSKCCFVSFCDKCIRDYIITQSKCICGVK 258 L C +C D A+ T C SFC+KC+ +YI Q+ G+K Sbjct: 912 LECSICTTEPMDLDKALFTE--CGHSFCEKCLFEYIEFQNSKNLGLK 956
>RAD5_ASPFU (Q4WVM1) DNA repair protein rad5 (EC 3.6.1.-)| Length = 1245 Score = 28.9 bits (63), Expect = 6.3 Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 1/87 (1%) Frame = +1 Query: 133 CQLCNKV-MADAVLTSKCCFVSFCDKCIRDYIITQSKCICGVKVLADSLIPNPTVRSTIS 309 C +C++ M D +T+ C+ S C KC+ DYI Q+ GV S T R Sbjct: 941 CPICSEEPMIDPAVTA--CWHSACKKCLEDYIRHQTD--KGVPPRCFSCRAPVTSRDIFQ 996 Query: 310 NLLGTRTCSTASGTGKHRSSSGSNADP 390 + ST + T + S+ S+ P Sbjct: 997 VIRHQSPSSTPTETDLYSSTPASSPHP 1023
>HAP1_YEAST (P12351) Heme-responsive zinc finger transcription factor HAP1| (Heme activator protein 1) (CYP1 activatory protein) Length = 1483 Score = 28.9 bits (63), Expect = 6.3 Identities = 13/43 (30%), Positives = 24/43 (55%) Frame = +1 Query: 283 NPTVRSTISNLLGTRTCSTASGTGKHRSSSGSNADPKSQSHTT 411 NP+ T++N + T +++S +G S SGSN K ++ + Sbjct: 727 NPSTNPTLNNNMSAATTNSSSRSGSADSRSGSNPVNKKENQVS 769
>RAG1_PIG (Q867B5) V(D)J recombination-activating protein 1 (RAG-1)| Length = 1043 Score = 28.5 bits (62), Expect = 8.2 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 4/38 (10%) Frame = +1 Query: 112 DLPAE----LHCQLCNKVMADAVLTSKCCFVSFCDKCI 213 D PA + CQ+C ++AD V TS C FC CI Sbjct: 282 DFPAHFVKSISCQICEHILADPVETS--CKHVFCRICI 317
>LNX2_MOUSE (Q91XL2) Ligand of Numb-protein X 2 (Numb-binding protein 2)| Length = 687 Score = 28.5 bits (62), Expect = 8.2 Identities = 15/47 (31%), Positives = 26/47 (55%) Frame = +1 Query: 103 EVDDLPAELHCQLCNKVMADAVLTSKCCFVSFCDKCIRDYIITQSKC 243 EVDD +L C +C + + + T C +FC KC+R+++ + C Sbjct: 44 EVDD---DLVCHICLQPLLQPLDTP--CGHTFCHKCLRNFLQEKDFC 85
>RAG1_RABIT (P34088) V(D)J recombination-activating protein 1 (RAG-1)| Length = 1042 Score = 28.5 bits (62), Expect = 8.2 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 4/38 (10%) Frame = +1 Query: 112 DLPAE----LHCQLCNKVMADAVLTSKCCFVSFCDKCI 213 D PA + CQ+C ++AD V TS C FC CI Sbjct: 281 DFPAHFVKSISCQICEHILADPVETS--CKHVFCRICI 316
>KR413_HUMAN (Q9BYU7) Keratin-associated protein 4-13 (Keratin-associated| protein 4.13) (Ultrahigh sulfur keratin-associated protein 4.13) Length = 106 Score = 28.5 bits (62), Expect = 8.2 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%) Frame = -1 Query: 406 CGSVIWDQRCFLKNFCASLY-RWQCCKS 326 CGSV DQ C L+N C Y + CC++ Sbjct: 6 CGSVCSDQGCGLENCCRPSYCQTTCCRT 33
>KRA44_HUMAN (Q9BYR3) Keratin-associated protein 4-4 (Keratin-associated protein| 4.4) (Ultrahigh sulfur keratin-associated protein 4.4) Length = 166 Score = 28.5 bits (62), Expect = 8.2 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%) Frame = -1 Query: 406 CGSVIWDQRCFLKNFCASLY-RWQCCKS 326 CGSV DQ C L+N C Y + CC++ Sbjct: 6 CGSVCSDQGCGLENCCRPSYCQTTCCRT 33
>BRE1_ASHGO (Q757D9) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)| Length = 643 Score = 28.5 bits (62), Expect = 8.2 Identities = 13/50 (26%), Positives = 25/50 (50%) Frame = +1 Query: 91 ASVSEVDDLPAELHCQLCNKVMADAVLTSKCCFVSFCDKCIRDYIITQSK 240 A E+++ ++C LC+K D V+ K C FC C ++ + + + Sbjct: 577 ALAEELENFRTVVYCSLCSKNWKDTVI--KTCGHVFCADCCKERLAARMR 624
>RN141_RAT (Q6IV57) RING finger protein 141| Length = 230 Score = 28.5 bits (62), Expect = 8.2 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Frame = +1 Query: 97 VSEVDDLPAELHCQLCNKVMADAVLTSKCCFVSFCDKCIRDYIITQSKC-ICGVKV 261 + V L E C +C AD +L C SFC KCI + C IC +++ Sbjct: 143 MGRVKQLTDEEECCICMDGRADLILP---CAHSFCQKCIDKWSDRHRNCPICRLQM 195
>RN141_PONPY (Q5R7K8) RING finger protein 141| Length = 230 Score = 28.5 bits (62), Expect = 8.2 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Frame = +1 Query: 97 VSEVDDLPAELHCQLCNKVMADAVLTSKCCFVSFCDKCIRDYIITQSKC-ICGVKV 261 + V L E C +C AD +L C SFC KCI + C IC +++ Sbjct: 143 MGRVKQLTDEEECCICMDGRADLILP---CAHSFCQKCIDKWSDRHRNCPICRLQM 195
>RN141_MOUSE (Q99MB7) RING finger protein 141 (Zinc finger protein 230)| Length = 230 Score = 28.5 bits (62), Expect = 8.2 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Frame = +1 Query: 97 VSEVDDLPAELHCQLCNKVMADAVLTSKCCFVSFCDKCIRDYIITQSKC-ICGVKV 261 + V L E C +C AD +L C SFC KCI + C IC +++ Sbjct: 143 MGRVKQLTDEEECCICMDGRADLILP---CAHSFCQKCIDKWSDRHRNCPICRLQM 195
>RN141_HUMAN (Q8WVD5) RING finger protein 141 (Zinc finger protein 230)| Length = 230 Score = 28.5 bits (62), Expect = 8.2 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Frame = +1 Query: 97 VSEVDDLPAELHCQLCNKVMADAVLTSKCCFVSFCDKCIRDYIITQSKC-ICGVKV 261 + V L E C +C AD +L C SFC KCI + C IC +++ Sbjct: 143 MGRVKQLTDEEECCICMDGRADLILP---CAHSFCQKCIDKWSDRHRNCPICRLQM 195
>RAG1_MOUSE (P15919) V(D)J recombination-activating protein 1 (RAG-1)| Length = 1040 Score = 28.5 bits (62), Expect = 8.2 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 4/38 (10%) Frame = +1 Query: 112 DLPAE----LHCQLCNKVMADAVLTSKCCFVSFCDKCI 213 D PA + CQ+C ++AD V TS C FC CI Sbjct: 279 DFPAHFVKSISCQICEHILADPVETS--CKHLFCRICI 314
>IAA16_ORYSA (P0C127) Auxin-responsive protein IAA16 (Indoleacetic acid-induced| protein 16) Length = 228 Score = 28.5 bits (62), Expect = 8.2 Identities = 15/33 (45%), Positives = 19/33 (57%) Frame = +1 Query: 7 DNYKMSRPVAPVVPLNPVDGILSALAPAASVSE 105 D +K SRP APVV PV LA ++S S+ Sbjct: 47 DGFKASRPAAPVVGWPPVRSFRRNLASSSSSSK 79 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.129 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,722,564 Number of Sequences: 219361 Number of extensions: 1314069 Number of successful extensions: 4618 Number of sequences better than 10.0: 98 Number of HSP's better than 10.0 without gapping: 4355 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4603 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2793557952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
