ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd22a08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ARVC_HUMAN (O00192) Armadillo repeat protein deleted in velo-car... 83 2e-16
2ARVC_MOUSE (P98203) Armadillo repeat protein deleted in velo-car... 77 1e-14
3CTND1_HUMAN (O60716) Catenin delta-1 (p120 catenin) (p120(ctn)) ... 49 3e-06
4CTND1_XENLA (Q8AXM9) Catenin delta-1 (p120 catenin) (p120(ctn)) ... 43 3e-04
5CTND1_MOUSE (P30999) Catenin delta-1 (p120 catenin) (p120(ctn)) ... 41 0.001

>ARVC_HUMAN (O00192) Armadillo repeat protein deleted in velo-cardio-facial|
            syndrome
          Length = 962

 Score = 83.2 bits (204), Expect = 2e-16
 Identities = 42/67 (62%), Positives = 49/67 (73%), Gaps = 2/67 (2%)
 Frame = +1

Query: 1    KEGWNKANFQTAVXTL--PKGSKGNGKSGFDDSTLPLVDKSQVNKKSGSRDMIPMGELGP 174
            K+GW KA FQ+A  T   PKG+   G  GFDDSTLPLVDKS   +K+GSRD+IPM  LGP
Sbjct: 841  KDGWTKARFQSAAATAKGPKGALSPG--GFDDSTLPLVDKSLEGEKTGSRDVIPMDALGP 898

Query: 175  DGYXTID 195
            DGY T+D
Sbjct: 899  DGYSTVD 905



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>ARVC_MOUSE (P98203) Armadillo repeat protein deleted in velo-cardio-facial|
            syndrome homolog
          Length = 962

 Score = 77.4 bits (189), Expect = 1e-14
 Identities = 39/66 (59%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
 Frame = +1

Query: 1    KEGWNKANFQTAVXTLPKGSKGNGKSG-FDDSTLPLVDKSQVNKKSGSRDMIPMGELGPD 177
            ++GW K+ FQ+A  +  KG KG   SG FDDSTLPLVDKS   +KS +RD+IPM  LGPD
Sbjct: 842  RDGWTKSRFQSA--STAKGPKGTPSSGGFDDSTLPLVDKSLDGEKSNTRDVIPMDTLGPD 899

Query: 178  GYXTID 195
            GY T+D
Sbjct: 900  GYATVD 905



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>CTND1_HUMAN (O60716) Catenin delta-1 (p120 catenin) (p120(ctn))|
            (Cadherin-associated Src substrate) (CAS) (p120(cas))
          Length = 968

 Score = 49.3 bits (116), Expect = 3e-06
 Identities = 23/57 (40%), Positives = 33/57 (57%)
 Frame = +1

Query: 1    KEGWNKANFQTAVXTLPKGSKGNGKSGFDDSTLPLVDKSQVNKKSGSRDMIPMGELG 171
            KEGW K++FQ     L   S+      +DDSTLPL+D++Q + K   R+ I M  +G
Sbjct: 841  KEGWKKSDFQV---NLNNASRSQSSHSYDDSTLPLIDRNQKSDKKPDREEIQMSNMG 894



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>CTND1_XENLA (Q8AXM9) Catenin delta-1 (p120 catenin) (p120(ctn)) (Xp120(ctn))|
          Length = 859

 Score = 42.7 bits (99), Expect = 3e-04
 Identities = 20/61 (32%), Positives = 33/61 (54%)
 Frame = +1

Query: 1   KEGWNKANFQTAVXTLPKGSKGNGKSGFDDSTLPLVDKSQVNKKSGSRDMIPMGELGPDG 180
           K+GW K++FQ +          +   G+DDSTLPL+D++  N+K      IP+ +   D 
Sbjct: 761 KDGWKKSDFQVSTAAT------SSVQGYDDSTLPLIDRNLKNEKKSVNADIPLNDFIADQ 814

Query: 181 Y 183
           +
Sbjct: 815 F 815



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>CTND1_MOUSE (P30999) Catenin delta-1 (p120 catenin) (p120(ctn))|
           (Cadherin-associated Src substrate) (CAS) (p120(cas))
          Length = 911

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 18/40 (45%), Positives = 25/40 (62%)
 Frame = +1

Query: 1   KEGWNKANFQTAVXTLPKGSKGNGKSGFDDSTLPLVDKSQ 120
           KEGW K++FQ     L   S+      +DDSTLPL+D++Q
Sbjct: 835 KEGWKKSDFQV---NLNNASRSQSSHSYDDSTLPLIDRNQ 871


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.307    0.132    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,222,199
Number of Sequences: 219361
Number of extensions: 574219
Number of successful extensions: 788
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 80,573,946
effective HSP length: 40
effective length of database: 71,799,506
effective search space used: 1723188144
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
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