ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd22a02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SYP71_ARATH (Q9SF29) Syntaxin-71 (AtSYP71) 79 4e-15
2SYP73_ARATH (Q94KK5) Syntaxin-73 (AtSYP73) 64 1e-10
3SYP72_ARATH (Q94KK6) Syntaxin-72 (AtSYP72) 64 1e-10
4BIN3_XENLA (Q5PPZ5) Bridging integrator 3 homolog 29 2.7
5ZFPP_MYCLE (Q9CB36) Short-chain Z-isoprenyl diphosphate syntheta... 28 8.0

>SYP71_ARATH (Q9SF29) Syntaxin-71 (AtSYP71)|
          Length = 266

 Score = 78.6 bits (192), Expect = 4e-15
 Identities = 35/55 (63%), Positives = 45/55 (81%)
 Frame = +2

Query: 95  MTVIDILTRVDAICQKYDKYDAEKLNGANVAGEDPFARLYGSVDAEISQCVEKAE 259
           MTVIDILTRVD+IC+KYDKYD +K   AN++G+D FARLYG+ + +I   +EKAE
Sbjct: 1   MTVIDILTRVDSICKKYDKYDVDKQREANISGDDAFARLYGAFETQIETALEKAE 55



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>SYP73_ARATH (Q94KK5) Syntaxin-73 (AtSYP73)|
          Length = 263

 Score = 63.9 bits (154), Expect = 1e-10
 Identities = 27/55 (49%), Positives = 41/55 (74%)
 Frame = +2

Query: 95  MTVIDILTRVDAICQKYDKYDAEKLNGANVAGEDPFARLYGSVDAEISQCVEKAE 259
           M VID++TRVD+IC+KY+KYD  +   ANV+G+D F+RLY +V+  +   ++K E
Sbjct: 1   MGVIDLITRVDSICKKYEKYDINRQRDANVSGDDAFSRLYSAVEYALETVLQKTE 55



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>SYP72_ARATH (Q94KK6) Syntaxin-72 (AtSYP72)|
          Length = 267

 Score = 63.5 bits (153), Expect = 1e-10
 Identities = 29/57 (50%), Positives = 40/57 (70%)
 Frame = +2

Query: 95  MTVIDILTRVDAICQKYDKYDAEKLNGANVAGEDPFARLYGSVDAEISQCVEKAEAA 265
           M VIDI+ RVD IC+KYDKYD +K      +G+D F+RL+ S+D++I   + KAE A
Sbjct: 1   MPVIDIIFRVDEICKKYDKYDIDKHREIGASGDDAFSRLFTSIDSDIEAVLRKAELA 57



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>BIN3_XENLA (Q5PPZ5) Bridging integrator 3 homolog|
          Length = 252

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 15/58 (25%), Positives = 30/58 (51%)
 Frame = +2

Query: 92  EMTVIDILTRVDAICQKYDKYDAEKLNGANVAGEDPFARLYGSVDAEISQCVEKAEAA 265
           ++  + ++T +D   ++ D ++ EK+N       DP  R Y SV   ++  V++ E A
Sbjct: 74  DVDFLQMVTALDTAMKRMDAFNQEKVNQIQKTVMDPLKR-YSSVFPSLNMAVKRREQA 130



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>ZFPP_MYCLE (Q9CB36) Short-chain Z-isoprenyl diphosphate synthetase (EC|
           2.5.1.-) (Z-FPP synthetase) (Z-isoprenyl diphosphate
           synthase)
          Length = 262

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +2

Query: 101 VIDILTRV-DAICQKYDKYDAEKLNGANVAGEDPFARLYGSVDA 229
           +I+I+T V + IC   +++    +    + GE+P  RL G+V++
Sbjct: 100 LIEIITDVVEEICAPANRWSVRTVGDLELLGEEPACRLRGAVES 143


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.312    0.136    0.453 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,155,619
Number of Sequences: 219361
Number of extensions: 314279
Number of successful extensions: 880
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 80,573,946
effective HSP length: 65
effective length of database: 66,315,481
effective search space used: 1591571544
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
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