ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd22a02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK099747.1| Oryza sativa (japonica cultivar-group) cDNA clon... 244 1e-61
2dbj|AK103396.1| Oryza sativa (japonica cultivar-group) cDNA clon... 244 1e-61
3dbj|AK101606.1| Oryza sativa (japonica cultivar-group) cDNA clon... 244 1e-61
4ref|XM_475871.1| Oryza sativa (japonica cultivar-group), predic... 242 5e-61
5gb|AC129717.3| Oryza sativa (japonica cultivar-group) chromosome... 222 4e-55
6gb|AC093956.2| Oryza sativa (japonica cultivar-group) chromosome... 222 4e-55
7dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 222 4e-55
8gb|AY107058.1| Zea mays PCO100771 mRNA sequence 202 4e-49
9ref|NM_192084.1| Oryza sativa (japonica cultivar-group), predic... 178 6e-42
10dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 174 9e-41
11dbj|AP003452.3| Oryza sativa (japonica cultivar-group) genomic D... 174 9e-41
12dbj|AP003347.3| Oryza sativa (japonica cultivar-group) genomic D... 174 9e-41
13ref|XM_450588.1| Oryza sativa (japonica cultivar-group), mRNA 82 1e-12
14dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 82 1e-12
15dbj|AP005836.3| Oryza sativa (japonica cultivar-group) genomic D... 82 1e-12
16dbj|AP005508.3| Oryza sativa (japonica cultivar-group) genomic D... 82 1e-12
17gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome 44 0.22
18gb|AY127871.1| Aeromonas culicicola MTCC 3249 clone SLH RNA poly... 42 0.89
19gb|AY127870.1| Aeromonas culicicola MTCC 3249 clone SH RNA polym... 42 0.89
20gb|AY185587.1| Aeromonas punctata strain CECT 4221 RNA polymeras... 40 3.5
21gb|AY185586.1| Aeromonas allosaccharophila strain CECT 4200 RNA ... 40 3.5
22gb|AY185585.1| Aeromonas allosaccharophila strain CECT 4220 RNA ... 40 3.5
23gb|AY169354.1| Aeromonas veronii bv. Veronii strain LMG 16334 RN... 40 3.5
24gb|AY169348.1| Aeromonas allosaccharophila strain CECT 4199 RNA ... 40 3.5
25gb|AY169342.1| Aeromonas veronii bv. Veronii strain CECT 4486 RN... 40 3.5
26gb|AY169339.1| Aeromonas eucrenophila strain CECT 4224 RNA polym... 40 3.5
27gb|AY169333.1| Aeromonas veronii bv. Sobria strain CECT 4246 RNA... 40 3.5
28gb|AY249199.1| Aeromonas punctata 665c RNA polymerase sigma-70 f... 40 3.5
29gb|AY249196.1| Aeromonas jandaei 344 RNA polymerase sigma-70 fac... 40 3.5
30gb|AY249195.1| Aeromonas sobria 350 RNA polymerase sigma-70 fact... 40 3.5
31gb|AY249193.1| Aeromonas eucrenophila CECT 4827 RNA polymerase s... 40 3.5
32gb|AY129002.1| Aeromonas eucrenophila RNA polymerase sigma-70 fa... 40 3.5
33gb|AY127869.1| Aeromonas culicicola MTCC 3249 RNA polymerase sig... 40 3.5
34gb|AY127867.1| Aeromonas allosaccharophila RNA polymerase sigma ... 40 3.5
35gb|AY127862.1| Aeromonas veronii bv. Veronii RNA polymerase sigm... 40 3.5
36gb|AY127860.1| Aeromonas veronii bv. Sobria RNA polymerase sigma... 40 3.5
37gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 3.5
38gb|AE005163.1| Halobacterium sp. NRC-1 plasmid pNRC200 section 2... 40 3.5
39emb|AJ334746.1|HSA334746 Homo sapiens genomic sequence surroundi... 40 3.5
40emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid compl... 40 3.5 
>dbj|AK099747.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091N20, full
           insert sequence
          Length = 1227

 Score =  244 bits (123), Expect = 1e-61
 Identities = 165/179 (92%)
 Strand = Plus / Plus

                                                                       
Query: 88  cgcggagatgacggtgatcgacatcctcacgcgggtggacgccatctgccagaagtacga 147
           |||| ||||||  ||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 114 cgcgaagatgagcgtgatcgacatcctcacgcgggtggactccatctgcaagaagtacga 173

                                                                       
Query: 148 caagtacgacgccgagaagctcaacggcgccaacgtcgccggcgaggaccccttcgcccg 207
           ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 caagtacgacgtcgagaggctcaacggcgccaacgtcgccggcgaggaccccttcgcccg 233

                                                                      
Query: 208 cctctacggctccgtcgacgccgagatctcccagtgcgtagagaaagcggaggcggcga 266
           ||||||||||||| |||||||||| |||  | | ||||| |||||||||||||||||||
Sbjct: 234 cctctacggctccatcgacgccgacatcaacgaatgcgtcgagaaagcggaggcggcga 292
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>dbj|AK103396.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033127N02, full
           insert sequence
          Length = 1252

 Score =  244 bits (123), Expect = 1e-61
 Identities = 165/179 (92%)
 Strand = Plus / Plus

                                                                       
Query: 88  cgcggagatgacggtgatcgacatcctcacgcgggtggacgccatctgccagaagtacga 147
           |||| ||||||  ||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 138 cgcgaagatgagcgtgatcgacatcctcacgcgggtggactccatctgcaagaagtacga 197

                                                                       
Query: 148 caagtacgacgccgagaagctcaacggcgccaacgtcgccggcgaggaccccttcgcccg 207
           ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 caagtacgacgtcgagaggctcaacggcgccaacgtcgccggcgaggaccccttcgcccg 257

                                                                      
Query: 208 cctctacggctccgtcgacgccgagatctcccagtgcgtagagaaagcggaggcggcga 266
           ||||||||||||| |||||||||| |||  | | ||||| |||||||||||||||||||
Sbjct: 258 cctctacggctccatcgacgccgacatcaacgaatgcgtcgagaaagcggaggcggcga 316
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>dbj|AK101606.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033051M14, full
           insert sequence
          Length = 1236

 Score =  244 bits (123), Expect = 1e-61
 Identities = 165/179 (92%)
 Strand = Plus / Plus

                                                                       
Query: 88  cgcggagatgacggtgatcgacatcctcacgcgggtggacgccatctgccagaagtacga 147
           |||| ||||||  ||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 123 cgcgaagatgagcgtgatcgacatcctcacgcgggtggactccatctgcaagaagtacga 182

                                                                       
Query: 148 caagtacgacgccgagaagctcaacggcgccaacgtcgccggcgaggaccccttcgcccg 207
           ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 caagtacgacgtcgagaggctcaacggcgccaacgtcgccggcgaggaccccttcgcccg 242

                                                                      
Query: 208 cctctacggctccgtcgacgccgagatctcccagtgcgtagagaaagcggaggcggcga 266
           ||||||||||||| |||||||||| |||  | | ||||| |||||||||||||||||||
Sbjct: 243 cctctacggctccatcgacgccgacatcaacgaatgcgtcgagaaagcggaggcggcga 301
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>ref|XM_475871.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 951

 Score =  242 bits (122), Expect = 5e-61
 Identities = 155/166 (93%)
 Strand = Plus / Plus

                                                                       
Query: 101 gtgatcgacatcctcacgcgggtggacgccatctgccagaagtacgacaagtacgacgcc 160
           ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
Sbjct: 7   gtgatcgacatcctcacgcgggtggactccatctgcaagaagtacgacaagtacgacgtc 66

                                                                       
Query: 161 gagaagctcaacggcgccaacgtcgccggcgaggaccccttcgcccgcctctacggctcc 220
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67  gagaggctcaacggcgccaacgtcgccggcgaggaccccttcgcccgcctctacggctcc 126

                                                         
Query: 221 gtcgacgccgagatctcccagtgcgtagagaaagcggaggcggcga 266
            |||||||||| |||  | | ||||| |||||||||||||||||||
Sbjct: 127 atcgacgccgacatcaacgaatgcgtcgagaaagcggaggcggcga 172
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>gb|AC129717.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0079H23,
              complete sequence
          Length = 191765

 Score =  222 bits (112), Expect = 4e-55
 Identities = 136/144 (94%)
 Strand = Plus / Plus

                                                                          
Query: 88     cgcggagatgacggtgatcgacatcctcacgcgggtggacgccatctgccagaagtacga 147
              |||| ||||||  ||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 185035 cgcgaagatgagcgtgatcgacatcctcacgcgggtggactccatctgcaagaagtacga 185094

                                                                          
Query: 148    caagtacgacgccgagaagctcaacggcgccaacgtcgccggcgaggaccccttcgcccg 207
              ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185095 caagtacgacgtcgagaggctcaacggcgccaacgtcgccggcgaggaccccttcgcccg 185154

                                      
Query: 208    cctctacggctccgtcgacgccga 231
              ||||||||||||| ||||||||||
Sbjct: 185155 cctctacggctccatcgacgccga 185178
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>gb|AC093956.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1263_E10,
             complete sequence
          Length = 116469

 Score =  222 bits (112), Expect = 4e-55
 Identities = 136/144 (94%)
 Strand = Plus / Plus

                                                                         
Query: 88    cgcggagatgacggtgatcgacatcctcacgcgggtggacgccatctgccagaagtacga 147
             |||| ||||||  ||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 22524 cgcgaagatgagcgtgatcgacatcctcacgcgggtggactccatctgcaagaagtacga 22583

                                                                         
Query: 148   caagtacgacgccgagaagctcaacggcgccaacgtcgccggcgaggaccccttcgcccg 207
             ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22584 caagtacgacgtcgagaggctcaacggcgccaacgtcgccggcgaggaccccttcgcccg 22643

                                     
Query: 208   cctctacggctccgtcgacgccga 231
             ||||||||||||| ||||||||||
Sbjct: 22644 cctctacggctccatcgacgccga 22667
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  222 bits (112), Expect = 4e-55
 Identities = 136/144 (94%)
 Strand = Plus / Plus

                                                                            
Query: 88       cgcggagatgacggtgatcgacatcctcacgcgggtggacgccatctgccagaagtacga 147
                |||| ||||||  ||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 27310067 cgcgaagatgagcgtgatcgacatcctcacgcgggtggactccatctgcaagaagtacga 27310126

                                                                            
Query: 148      caagtacgacgccgagaagctcaacggcgccaacgtcgccggcgaggaccccttcgcccg 207
                ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27310127 caagtacgacgtcgagaggctcaacggcgccaacgtcgccggcgaggaccccttcgcccg 27310186

                                        
Query: 208      cctctacggctccgtcgacgccga 231
                ||||||||||||| ||||||||||
Sbjct: 27310187 cctctacggctccatcgacgccga 27310210
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>gb|AY107058.1| Zea mays PCO100771 mRNA sequence
          Length = 737

 Score =  202 bits (102), Expect = 4e-49
 Identities = 159/178 (89%)
 Strand = Plus / Plus

                                                                       
Query: 81  atcgggccgcggagatgacggtgatcgacatcctcacgcgggtggacgccatctgccaga 140
           |||||| ||||  |||||| ||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 195 atcggggcgcgaggatgaccgtgatcgacatcctcacccgggtggacgcgatctgccaga 254

                                                                       
Query: 141 agtacgacaagtacgacgccgagaagctcaacggcgccaacgtcgccggcgaggacccct 200
           |||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||| |
Sbjct: 255 agtacgacaagtacgacgtcgacaagctcaacggcgccaacgtcgccggcgacgacccgt 314

                                                                     
Query: 201 tcgcccgcctctacggctccgtcgacgccgagatctcccagtgcgtagagaaagcgga 258
           |||||||||||||||  ||||||||||| || |||  ||| ||||| || ||||||||
Sbjct: 315 tcgcccgcctctacgcgtccgtcgacgcggacatcaaccaatgcgtcgataaagcgga 372
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>ref|NM_192084.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 861

 Score =  178 bits (90), Expect = 6e-42
 Identities = 147/166 (88%)
 Strand = Plus / Plus

                                                                       
Query: 101 gtgatcgacatcctcacgcgggtggacgccatctgccagaagtacgacaagtacgacgcc 160
           |||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 7   gtgatcgacatcctgacgcgggtggacgccatctgccagaagtacggcaggtacgacgcc 66

                                                                       
Query: 161 gagaagctcaacggcgccaacgtcgccggcgaggaccccttcgcccgcctctacggctcc 220
           ||||||||| ||||| ||  |||||||||||||||||||||||| |||||||||| ||| 
Sbjct: 67  gagaagctccacggctccggcgtcgccggcgaggaccccttcgcgcgcctctacgcctcg 126

                                                         
Query: 221 gtcgacgccgagatctcccagtgcgtagagaaagcggaggcggcga 266
           |||||||| ||  ||  | | ||| | |||||||||||||||||||
Sbjct: 127 gtcgacgctgacctcaacgaatgcctcgagaaagcggaggcggcga 172
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  174 bits (88), Expect = 9e-41
 Identities = 118/128 (92%)
 Strand = Plus / Minus

                                                                            
Query: 101      gtgatcgacatcctcacgcgggtggacgccatctgccagaagtacgacaagtacgacgcc 160
                |||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 28239314 gtgatcgacatcctgacgcgggtggacgccatctgccagaagtacggcaggtacgacgcc 28239255

                                                                            
Query: 161      gagaagctcaacggcgccaacgtcgccggcgaggaccccttcgcccgcctctacggctcc 220
                ||||||||| ||||| ||  |||||||||||||||||||||||| |||||||||| ||| 
Sbjct: 28239254 gagaagctccacggctccggcgtcgccggcgaggaccccttcgcgcgcctctacgcctcg 28239195

                        
Query: 221      gtcgacgc 228
                ||||||||
Sbjct: 28239194 gtcgacgc 28239187
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>dbj|AP003452.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0478H03
          Length = 167560

 Score =  174 bits (88), Expect = 9e-41
 Identities = 118/128 (92%)
 Strand = Plus / Minus

                                                                         
Query: 101   gtgatcgacatcctcacgcgggtggacgccatctgccagaagtacgacaagtacgacgcc 160
             |||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 73821 gtgatcgacatcctgacgcgggtggacgccatctgccagaagtacggcaggtacgacgcc 73762

                                                                         
Query: 161   gagaagctcaacggcgccaacgtcgccggcgaggaccccttcgcccgcctctacggctcc 220
             ||||||||| ||||| ||  |||||||||||||||||||||||| |||||||||| ||| 
Sbjct: 73761 gagaagctccacggctccggcgtcgccggcgaggaccccttcgcgcgcctctacgcctcg 73702

                     
Query: 221   gtcgacgc 228
             ||||||||
Sbjct: 73701 gtcgacgc 73694
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>dbj|AP003347.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0445E10
          Length = 145912

 Score =  174 bits (88), Expect = 9e-41
 Identities = 118/128 (92%)
 Strand = Plus / Minus

                                                                          
Query: 101    gtgatcgacatcctcacgcgggtggacgccatctgccagaagtacgacaagtacgacgcc 160
              |||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 123308 gtgatcgacatcctgacgcgggtggacgccatctgccagaagtacggcaggtacgacgcc 123249

                                                                          
Query: 161    gagaagctcaacggcgccaacgtcgccggcgaggaccccttcgcccgcctctacggctcc 220
              ||||||||| ||||| ||  |||||||||||||||||||||||| |||||||||| ||| 
Sbjct: 123248 gagaagctccacggctccggcgtcgccggcgaggaccccttcgcgcgcctctacgcctcg 123189

                      
Query: 221    gtcgacgc 228
              ||||||||
Sbjct: 123188 gtcgacgc 123181
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>ref|XM_450588.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 792

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 47/49 (95%)
 Strand = Plus / Plus

                                                            
Query: 119 cgggtggacgccatctgccagaagtacgacaagtacgacgccgagaagc 167
           |||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 25  cgggtggacgccatctgcaagaagtacgacaagtacgacgccgacaagc 73
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 47/49 (95%)
 Strand = Plus / Plus

                                                                 
Query: 119      cgggtggacgccatctgccagaagtacgacaagtacgacgccgagaagc 167
                |||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 11646745 cgggtggacgccatctgcaagaagtacgacaagtacgacgccgacaagc 11646793
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>dbj|AP005836.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0013F08
          Length = 166989

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 47/49 (95%)
 Strand = Plus / Plus

                                                               
Query: 119    cgggtggacgccatctgccagaagtacgacaagtacgacgccgagaagc 167
              |||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 162752 cgggtggacgccatctgcaagaagtacgacaagtacgacgccgacaagc 162800
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>dbj|AP005508.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0711F01
          Length = 193091

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 47/49 (95%)
 Strand = Plus / Plus

                                                              
Query: 119   cgggtggacgccatctgccagaagtacgacaagtacgacgccgagaagc 167
             |||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 81379 cgggtggacgccatctgcaagaagtacgacaagtacgacgccgacaagc 81427
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>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome
          Length = 2467205

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 105    tcgacatcctcacgcgggtggacgccatct 134
              |||||||||||| ||||||||||| |||||
Sbjct: 638721 tcgacatcctcaagcgggtggacgacatct 638750
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>gb|AY127871.1| Aeromonas culicicola MTCC 3249 clone SLH RNA polymerase sigma
           factor D gene, partial cds
          Length = 844

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 141 agtacgacaagtacgacgccgagaagctc 169
           |||||||||||||||| |||||| |||||
Sbjct: 137 agtacgacaagtacgaagccgagcagctc 165
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>gb|AY127870.1| Aeromonas culicicola MTCC 3249 clone SH RNA polymerase sigma factor
           D gene, partial cds
          Length = 844

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 141 agtacgacaagtacgacgccgagaagctc 169
           |||||||||||||||| |||||| |||||
Sbjct: 137 agtacgacaagtacgaagccgagcagctc 165
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>gb|AY185587.1| Aeromonas punctata strain CECT 4221 RNA polymerase sigma-70 factor
           (rpoD) gene, partial cds
          Length = 819

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 141 agtacgacaagtacgacgccgagaagct 168
           |||||||||||||||| |||||| ||||
Sbjct: 109 agtacgacaagtacgaagccgagcagct 136
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>gb|AY185586.1| Aeromonas allosaccharophila strain CECT 4200 RNA polymerase
           sigma-70 factor (rpoD) gene, partial cds
          Length = 819

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 141 agtacgacaagtacgacgccgagaagct 168
           |||||||||||||||| |||||| ||||
Sbjct: 109 agtacgacaagtacgaagccgagcagct 136
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>gb|AY185585.1| Aeromonas allosaccharophila strain CECT 4220 RNA polymerase
           sigma-70 factor (rpoD) gene, partial cds
          Length = 819

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 141 agtacgacaagtacgacgccgagaagct 168
           |||||||||||||||| |||||| ||||
Sbjct: 109 agtacgacaagtacgaagccgagcagct 136
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>gb|AY169354.1| Aeromonas veronii bv. Veronii strain LMG 16334 RNA polymerase
           sigma-70 factor (rpoD) gene, partial cds
          Length = 819

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 141 agtacgacaagtacgacgccgagaagct 168
           |||||||||||||||| |||||| ||||
Sbjct: 109 agtacgacaagtacgaagccgagcagct 136
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>gb|AY169348.1| Aeromonas allosaccharophila strain CECT 4199 RNA polymerase
           sigma-70 factor (rpoD) gene, partial cds
          Length = 819

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 141 agtacgacaagtacgacgccgagaagct 168
           |||||||||||||||| |||||| ||||
Sbjct: 109 agtacgacaagtacgaagccgagcagct 136
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>gb|AY169342.1| Aeromonas veronii bv. Veronii strain CECT 4486 RNA polymerase
           sigma-70 factor (rpoD) gene, partial cds
          Length = 819

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 141 agtacgacaagtacgacgccgagaagct 168
           |||||||||||||||| |||||| ||||
Sbjct: 109 agtacgacaagtacgaagccgagcagct 136
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>gb|AY169339.1| Aeromonas eucrenophila strain CECT 4224 RNA polymerase sigma-70
           factor (rpoD) gene, partial cds
          Length = 819

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 141 agtacgacaagtacgacgccgagaagct 168
           |||||||||||||||| |||||| ||||
Sbjct: 109 agtacgacaagtacgaagccgagcagct 136
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>gb|AY169333.1| Aeromonas veronii bv. Sobria strain CECT 4246 RNA polymerase
           sigma-70 factor (rpoD) gene, partial cds
          Length = 819

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 141 agtacgacaagtacgacgccgagaagct 168
           |||||||||||||||| |||||| ||||
Sbjct: 109 agtacgacaagtacgaagccgagcagct 136
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>gb|AY249199.1| Aeromonas punctata 665c RNA polymerase sigma-70 factor (rpoD) gene,
           partial cds
          Length = 819

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 141 agtacgacaagtacgacgccgagaagct 168
           |||||||||||||||| |||||| ||||
Sbjct: 109 agtacgacaagtacgaagccgagcagct 136
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>gb|AY249196.1| Aeromonas jandaei 344 RNA polymerase sigma-70 factor (rpoD) gene,
           partial cds
          Length = 819

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 141 agtacgacaagtacgacgccgagaagct 168
           |||||||||||||||| |||||| ||||
Sbjct: 109 agtacgacaagtacgaagccgagcagct 136
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>gb|AY249195.1| Aeromonas sobria 350 RNA polymerase sigma-70 factor (rpoD) gene,
           partial cds
          Length = 819

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 141 agtacgacaagtacgacgccgagaagct 168
           |||||||||||||||| |||||| ||||
Sbjct: 109 agtacgacaagtacgaagccgagcagct 136
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>gb|AY249193.1| Aeromonas eucrenophila CECT 4827 RNA polymerase sigma-70 factor
           (rpoD) gene, partial cds
          Length = 819

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 141 agtacgacaagtacgacgccgagaagct 168
           |||||||||||||||| |||||| ||||
Sbjct: 109 agtacgacaagtacgaagccgagcagct 136
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>gb|AY129002.1| Aeromonas eucrenophila RNA polymerase sigma-70 factor (rpoD) gene,
           partial cds
          Length = 844

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 141 agtacgacaagtacgacgccgagaagct 168
           |||||||||||||||| |||||| ||||
Sbjct: 137 agtacgacaagtacgaagccgagcagct 164
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>gb|AY127869.1| Aeromonas culicicola MTCC 3249 RNA polymerase sigma factor D gene,
           partial cds
          Length = 844

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 141 agtacgacaagtacgacgccgagaagct 168
           |||||||||||||||| |||||| ||||
Sbjct: 137 agtacgacaagtacgaagccgagcagct 164
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>gb|AY127867.1| Aeromonas allosaccharophila RNA polymerase sigma factor D gene,
           partial cds
          Length = 844

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 141 agtacgacaagtacgacgccgagaagct 168
           |||||||||||||||| |||||| ||||
Sbjct: 137 agtacgacaagtacgaagccgagcagct 164
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>gb|AY127862.1| Aeromonas veronii bv. Veronii RNA polymerase sigma factor D gene,
           partial cds
          Length = 844

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 141 agtacgacaagtacgacgccgagaagct 168
           |||||||||||||||| |||||| ||||
Sbjct: 137 agtacgacaagtacgaagccgagcagct 164
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>gb|AY127860.1| Aeromonas veronii bv. Sobria RNA polymerase sigma factor D gene,
           partial cds
          Length = 844

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 141 agtacgacaagtacgacgccgagaagct 168
           |||||||||||||||| |||||| ||||
Sbjct: 137 agtacgacaagtacgaagccgagcagct 164
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 148     caagtacgacgccgagaagc 167
               ||||||||||||||||||||
Sbjct: 2848164 caagtacgacgccgagaagc 2848183
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>gb|AE005163.1| Halobacterium sp. NRC-1 plasmid pNRC200 section 24 of 32 of the
            complete genome
          Length = 11483

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 185  gccggcgaggaccccttcgc 204
            ||||||||||||||||||||
Sbjct: 6587 gccggcgaggaccccttcgc 6568
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>emb|AJ334746.1|HSA334746 Homo sapiens genomic sequence surrounding NotI site, clone NB1-154C
          Length = 690

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 144 acgacaagtacgacgccgag 163
           ||||||||||||||||||||
Sbjct: 280 acgacaagtacgacgccgag 261
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>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 154    cgacgccgagaagctcaacg 173
              ||||||||||||||||||||
Sbjct: 319776 cgacgccgagaagctcaacg 319795


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,379,308
Number of Sequences: 3902068
Number of extensions: 1379308
Number of successful extensions: 30947
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30640
Number of HSP's gapped (non-prelim): 307
length of query: 270
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 248
effective length of database: 17,147,199,772
effective search space: 4252505543456
effective search space used: 4252505543456
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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