ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd21k20 |
|---|---|
| Clone Library Name | barley_pub |
>SKP1B_ARATH (Q9FHW7) SKP1-like protein 1B (SKP1-like 2) (UFO-binding protein 2)| Length = 171 Score = 213 bits (543), Expect = 3e-55 Identities = 106/162 (65%), Positives = 116/162 (71%), Gaps = 8/162 (4%) Frame = +3 Query: 156 RMVTLKSSDGXXXXXXXXXXXXSQTIRHLIEDDCADNGIPLPNVNSKILSKVIEYCNKHV 335 R +TLKSSDG SQTI+H+IEDDC DNGIPLPNV SKILSKVIEYC +HV Sbjct: 5 RKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYCKRHV 64 Query: 336 QXXXXXXXXXXXXXXXXXXXX--------LKNWDAEFVKVDQATLFDLILAANFLNIKGL 491 + LK WD+EF+KVDQ TLFDLILAAN+LNIKGL Sbjct: 65 EAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLNIKGL 124 Query: 492 LDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPDEEEEIRREN 617 LDLTCQTVADMIKGKTPEEIRKTFNIKNDFTP+EEEE+RREN Sbjct: 125 LDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRREN 166
>SKP1A_ARATH (Q39255) SKP1-like protein 1A (SKP1-like 1) (UFO-binding protein 1)| Length = 160 Score = 202 bits (514), Expect = 6e-52 Identities = 98/154 (63%), Positives = 113/154 (73%) Frame = +3 Query: 156 RMVTLKSSDGXXXXXXXXXXXXSQTIRHLIEDDCADNGIPLPNVNSKILSKVIEYCNKHV 335 + + LKSSDG SQTI H++EDDC DNG+PLPNV SKIL+KVIEYC +HV Sbjct: 4 KKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKRHV 63 Query: 336 QXXXXXXXXXXXXXXXXXXXXLKNWDAEFVKVDQATLFDLILAANFLNIKGLLDLTCQTV 515 + LK WDA+F+K+DQATLF+LILAAN+LNIK LLDLTCQTV Sbjct: 64 EAAASKAEAVEGAATSDDD--LKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTV 121 Query: 516 ADMIKGKTPEEIRKTFNIKNDFTPDEEEEIRREN 617 ADMIKGKTPEEIR TFNIKNDFTP+EEEE+RREN Sbjct: 122 ADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRREN 155
>SKP1_XENLA (Q71U00) S-phase kinase-associated protein 1A (Cyclin| A/CDK2-associated protein p19) (p19A) (p19skp1) Length = 162 Score = 146 bits (369), Expect = 4e-35 Identities = 79/157 (50%), Positives = 102/157 (64%), Gaps = 5/157 (3%) Frame = +3 Query: 162 VTLKSSDGXXXXXXXXXXXXSQTIRHLIED-----DCADNGIPLPNVNSKILSKVIEYCN 326 + L+SSDG S TI+ ++ED + D+ +PLPNVN+ IL KVI++C Sbjct: 3 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 62 Query: 327 KHVQXXXXXXXXXXXXXXXXXXXXLKNWDAEFVKVDQATLFDLILAANFLNIKGLLDLTC 506 H + WD EF+KVDQ TLF+LILAAN+L+IKGLLD+TC Sbjct: 63 HHKDDPPPPEDDENKEKRTDD---IPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC 119 Query: 507 QTVADMIKGKTPEEIRKTFNIKNDFTPDEEEEIRREN 617 +TVA+MIKGKTPEEIRKTFNIKNDFT +EE ++R+EN Sbjct: 120 KTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKEN 156
>SKP1_RAT (Q6PEC4) S-phase kinase-associated protein 1A (Cyclin| A/CDK2-associated protein p19) (p19A) (p19skp1) Length = 162 Score = 146 bits (369), Expect = 4e-35 Identities = 79/157 (50%), Positives = 102/157 (64%), Gaps = 5/157 (3%) Frame = +3 Query: 162 VTLKSSDGXXXXXXXXXXXXSQTIRHLIED-----DCADNGIPLPNVNSKILSKVIEYCN 326 + L+SSDG S TI+ ++ED + D+ +PLPNVN+ IL KVI++C Sbjct: 3 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 62 Query: 327 KHVQXXXXXXXXXXXXXXXXXXXXLKNWDAEFVKVDQATLFDLILAANFLNIKGLLDLTC 506 H + WD EF+KVDQ TLF+LILAAN+L+IKGLLD+TC Sbjct: 63 HHKDDPPPPEDDENKEKRTDD---IPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC 119 Query: 507 QTVADMIKGKTPEEIRKTFNIKNDFTPDEEEEIRREN 617 +TVA+MIKGKTPEEIRKTFNIKNDFT +EE ++R+EN Sbjct: 120 KTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKEN 156
>SKP1_MOUSE (Q9WTX5) S-phase kinase-associated protein 1A (Cyclin| A/CDK2-associated protein p19) (p19A) (p19skp1) Length = 162 Score = 146 bits (369), Expect = 4e-35 Identities = 79/157 (50%), Positives = 102/157 (64%), Gaps = 5/157 (3%) Frame = +3 Query: 162 VTLKSSDGXXXXXXXXXXXXSQTIRHLIED-----DCADNGIPLPNVNSKILSKVIEYCN 326 + L+SSDG S TI+ ++ED + D+ +PLPNVN+ IL KVI++C Sbjct: 3 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 62 Query: 327 KHVQXXXXXXXXXXXXXXXXXXXXLKNWDAEFVKVDQATLFDLILAANFLNIKGLLDLTC 506 H + WD EF+KVDQ TLF+LILAAN+L+IKGLLD+TC Sbjct: 63 HHKDDPPPPEDDENKEKRTDD---IPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC 119 Query: 507 QTVADMIKGKTPEEIRKTFNIKNDFTPDEEEEIRREN 617 +TVA+MIKGKTPEEIRKTFNIKNDFT +EE ++R+EN Sbjct: 120 KTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKEN 156
>SKP1_HUMAN (P63208) S-phase kinase-associated protein 1A (Cyclin| A/CDK2-associated protein p19) (p19A) (p19skp1) (RNA polymerase II elongation factor-like protein) (Organ of Corti protein 2) (OCP-II protein) (OCP-2) (Transcription elongation factor B) (S Length = 162 Score = 146 bits (369), Expect = 4e-35 Identities = 79/157 (50%), Positives = 102/157 (64%), Gaps = 5/157 (3%) Frame = +3 Query: 162 VTLKSSDGXXXXXXXXXXXXSQTIRHLIED-----DCADNGIPLPNVNSKILSKVIEYCN 326 + L+SSDG S TI+ ++ED + D+ +PLPNVN+ IL KVI++C Sbjct: 3 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 62 Query: 327 KHVQXXXXXXXXXXXXXXXXXXXXLKNWDAEFVKVDQATLFDLILAANFLNIKGLLDLTC 506 H + WD EF+KVDQ TLF+LILAAN+L+IKGLLD+TC Sbjct: 63 HHKDDPPPPEDDENKEKRTDD---IPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC 119 Query: 507 QTVADMIKGKTPEEIRKTFNIKNDFTPDEEEEIRREN 617 +TVA+MIKGKTPEEIRKTFNIKNDFT +EE ++R+EN Sbjct: 120 KTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKEN 156
>SKP1_CAVPO (P63209) S-phase kinase-associated protein 1A (Cyclin| A/CDK2-associated protein p19) (p19A) (p19skp1) (Organ of Corti protein 2) (OCP-II protein) (OCP-2) Length = 162 Score = 146 bits (369), Expect = 4e-35 Identities = 79/157 (50%), Positives = 102/157 (64%), Gaps = 5/157 (3%) Frame = +3 Query: 162 VTLKSSDGXXXXXXXXXXXXSQTIRHLIED-----DCADNGIPLPNVNSKILSKVIEYCN 326 + L+SSDG S TI+ ++ED + D+ +PLPNVN+ IL KVI++C Sbjct: 3 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 62 Query: 327 KHVQXXXXXXXXXXXXXXXXXXXXLKNWDAEFVKVDQATLFDLILAANFLNIKGLLDLTC 506 H + WD EF+KVDQ TLF+LILAAN+L+IKGLLD+TC Sbjct: 63 HHKDDPPPPEDDENKEKRTDD---IPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC 119 Query: 507 QTVADMIKGKTPEEIRKTFNIKNDFTPDEEEEIRREN 617 +TVA+MIKGKTPEEIRKTFNIKNDFT +EE ++R+EN Sbjct: 120 KTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKEN 156
>FP21_DICDI (P52285) Glycoprotein FP21 precursor| Length = 162 Score = 144 bits (362), Expect = 3e-34 Identities = 80/154 (51%), Positives = 102/154 (66%), Gaps = 1/154 (0%) Frame = +3 Query: 159 MVTLKSSDGXXXXXXXXXXXXSQTIRHLIED-DCADNGIPLPNVNSKILSKVIEYCNKHV 335 +V L+SSD S TI+++IED +D+ IPLPNV S IL KV++YC H Sbjct: 3 LVKLESSDEKVFEIEKEIACMSVTIKNMIEDIGESDSPIPLPNVTSTILEKVLDYCRHHH 62 Query: 336 QXXXXXXXXXXXXXXXXXXXXLKNWDAEFVKVDQATLFDLILAANFLNIKGLLDLTCQTV 515 Q + +D +F KVDQ TLF+LILAAN+L+IK LLD+TC+TV Sbjct: 63 QHPSPQGDDKKDEKRLDD---IPPYDRDFCKVDQPTLFELILAANYLDIKPLLDVTCKTV 119 Query: 516 ADMIKGKTPEEIRKTFNIKNDFTPDEEEEIRREN 617 A+MI+GKTPEEIRK FNIKNDFTP+EEE+IR+EN Sbjct: 120 ANMIRGKTPEEIRKIFNIKNDFTPEEEEQIRKEN 153
>SKP1_YEAST (P52286) Suppressor of kinetochore protein 1 (Centromere| DNA-binding protein complex CBF3 subunit D) (E3 ubiquitin ligase complex SCF subunit SKP1) Length = 193 Score = 119 bits (299), Expect = 5e-27 Identities = 63/126 (50%), Positives = 82/126 (65%), Gaps = 2/126 (1%) Frame = +3 Query: 246 EDDCADNGI--PLPNVNSKILSKVIEYCNKHVQXXXXXXXXXXXXXXXXXXXXLKNWDAE 419 +DD D+ I P+PNV S +L KVIE+ H + +WD E Sbjct: 66 DDDEDDDEIVMPVPNVRSSVLQKVIEWAEHH----RDSNFPDEDDDDSRKSAPVDSWDRE 121 Query: 420 FVKVDQATLFDLILAANFLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPDEEE 599 F+KVDQ L+++ILAAN+LNIK LLD C+ VA+MI+G++PEEIR+TFNI NDFTP+EE Sbjct: 122 FLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEA 181 Query: 600 EIRREN 617 IRREN Sbjct: 182 AIRREN 187
>OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)| Length = 2716 Score = 33.5 bits (75), Expect = 0.51 Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 4/97 (4%) Frame = +2 Query: 230 HPPPDRGRLRRQRH---PAPQRQLQDPLQGHRVLQQARPGQAXXXXXSWCVRCAAPRR*P 400 HPPP +++Q+H PAP P V ++ ++ A P P Sbjct: 103 HPPPPH--MQQQQHHGGPAPPPPGGAPEHAPGVKEEYTHLPPPHPHPAYGRYHADPNMDP 160 Query: 401 QELGRRVRQGRPSHPLRPHPGRKLPQHQGPTG-PDLP 508 G+ + G+P +PHP ++ PQ GP G P+ P Sbjct: 161 YRYGQPLPGGKPPQQQQPHPQQQPPQQPGPGGSPNRP 197
>PHLB1_HUMAN (Q86UU1) Pleckstrin homology-like domain family B member 1 (Protein| LL5-alpha) Length = 1377 Score = 32.3 bits (72), Expect = 1.1 Identities = 25/82 (30%), Positives = 29/82 (35%), Gaps = 5/82 (6%) Frame = +2 Query: 233 PPPDRGRLRRQRHPAPQRQLQDPLQGHRVLQQARPGQAXXXXXSWCVRCAAPRR*PQELG 412 PP RR P P R DP V + RP + W A+P LG Sbjct: 458 PPLSPSLSRRALSPLPTRTTPDPKLNREVAESPRPRR-------WAAHGASPEDFSLTLG 510 Query: 413 RRVRQGRPSHP-----LRPHPG 463 R R+ R P L PH G Sbjct: 511 ARGRRTRSPSPTLGESLAPHKG 532
>YP222_YEAST (Q08968) UPF0061 protein YPL222w| Length = 688 Score = 32.0 bits (71), Expect = 1.5 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%) Frame = +3 Query: 477 NIKGLLDLTCQTVADMIKGKTPEEIRKTFNI-KNDFTPDEEEEI 605 ++KGL+ L+ + ++ G T E + FNI K DF PD E +I Sbjct: 239 DLKGLIQLSDYCIEELFAGGTQFEGKPDFNIFKRDFFPDTETKI 282
>PSTA_XYLFT (Q87C89) Phosphate transport system permease protein pstA| Length = 287 Score = 30.0 bits (66), Expect = 5.7 Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 8/74 (10%) Frame = -3 Query: 598 SSSSGVKSFLMLKVLRISSGVLPLIM--------SATVWQVRSSRPLMLRKFAARMRSKR 443 S+S+G+ + ++L + RIS PL+ S+ ++Q +S PL++ +FA+ S Sbjct: 194 SASAGILTGILLALARISGETAPLLFTAFGNQYWSSNIFQPIASLPLVMNQFAS---SPY 250 Query: 442 VAWSTLTNSASQFL 401 +W L S + L Sbjct: 251 KSWQLLAWSGALVL 264
>PSTA_XYLFA (Q9PBK1) Phosphate transport system permease protein pstA| Length = 287 Score = 30.0 bits (66), Expect = 5.7 Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 8/74 (10%) Frame = -3 Query: 598 SSSSGVKSFLMLKVLRISSGVLPLIM--------SATVWQVRSSRPLMLRKFAARMRSKR 443 S+S+G+ + ++L + RIS PL+ S+ ++Q +S PL++ +FA+ S Sbjct: 194 SASAGILTGILLALARISGETAPLLFTAFGNQYWSSNIFQPIASLPLVMNQFAS---SPY 250 Query: 442 VAWSTLTNSASQFL 401 +W L S + L Sbjct: 251 KSWQLLAWSGALVL 264
>K1043_MOUSE (Q80XJ3) TPR repeat-containing protein KIAA1043| Length = 1691 Score = 29.3 bits (64), Expect = 9.7 Identities = 16/44 (36%), Positives = 23/44 (52%) Frame = +2 Query: 380 AAPRR*PQELGRRVRQGRPSHPLRPHPGRKLPQHQGPTGPDLPD 511 + P+ PQEL +R+ + SH L +L + GP GPD D Sbjct: 1388 STPKLDPQELAQRILEETKSHLLAV---ERLQRSGGPAGPDRED 1428
>GLT3_WHEAT (P08488) Glutenin, high molecular weight subunit 12 precursor| Length = 660 Score = 29.3 bits (64), Expect = 9.7 Identities = 23/87 (26%), Positives = 36/87 (41%) Frame = +2 Query: 248 GRLRRQRHPAPQRQLQDPLQGHRVLQQARPGQAXXXXXSWCVRCAAPRR*PQELGRRVRQ 427 G+ ++ + PA Q+Q QGH +PGQ S Q+LG+ + Sbjct: 345 GQGQQGQIPASQQQPGQGQQGHYPASLQQPGQQGHYPTSL-----------QQLGQGQQI 393 Query: 428 GRPSHPLRPHPGRKLPQHQGPTGPDLP 508 G+P +P G++ Q Q P P Sbjct: 394 GQPGQKQQPGQGQQTGQGQQPEQEQQP 420
>PRPC_HUMAN (P02810) Salivary acidic proline-rich phosphoprotein 1/2 precursor| (PRP-1/PRP-2) (Parotid proline-rich protein 1/2) (Pr1/Pr2) (Protein C) (Parotid acidic protein) (Pa) (Parotid isoelectric focusing variant protein) (PIF-S) (Parotid double-band Length = 166 Score = 29.3 bits (64), Expect = 9.7 Identities = 30/93 (32%), Positives = 38/93 (40%), Gaps = 5/93 (5%) Frame = +2 Query: 236 PPDRGRLRRQRHPAPQRQLQDPLQ--GHRVLQQARPGQAXXXXXSWCVRCAAPRR*PQEL 409 PP +G ++Q P PQ + Q P Q GH Q RP P+ PQ+ Sbjct: 73 PPQQGGQQQQGPPPPQGKPQGPPQQGGHPPPPQGRPQGPPQQGGHPRPPRGRPQGPPQQG 132 Query: 410 GRRVRQGRPSHPLRPHPGRKL---PQHQGPTGP 499 G +QG P P PG+ PQ P GP Sbjct: 133 GH--QQGPPP----PPPGKPQGPPPQGGRPQGP 159
>PROL4_HUMAN (Q16378) Proline-rich protein 4 precursor (Lacrimal proline-rich| protein) (Nasopharyngeal carcinoma-associated proline-rich protein 4) Length = 134 Score = 29.3 bits (64), Expect = 9.7 Identities = 20/58 (34%), Positives = 22/58 (37%) Frame = +2 Query: 233 PPPDRGRLRRQRHPAPQRQLQDPLQGHRVLQQARPGQAXXXXXSWCVRCAAPRR*PQE 406 PP G R P Q Q + P +GHR L R S R P R PQE Sbjct: 73 PPKPGGHHRHPPPPPFQNQQRPPQRGHRQLSLPRFPSVSLQEASSFFRRDRPARHPQE 130
>GLT0_WHEAT (P10387) Glutenin, high molecular weight subunit DY10 precursor| Length = 648 Score = 29.3 bits (64), Expect = 9.7 Identities = 22/87 (25%), Positives = 36/87 (41%) Frame = +2 Query: 248 GRLRRQRHPAPQRQLQDPLQGHRVLQQARPGQAXXXXXSWCVRCAAPRR*PQELGRRVRQ 427 G+ ++ + PA Q+Q QGH +PGQ + Q+LG+ + Sbjct: 333 GQGQQGQIPASQQQPGQGQQGHYPASLQQPGQGQQGHYPTSL---------QQLGQGQQT 383 Query: 428 GRPSHPLRPHPGRKLPQHQGPTGPDLP 508 G+P +P G++ Q Q P P Sbjct: 384 GQPGQKQQPGQGQQTGQGQQPEQEQQP 410 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,327,053 Number of Sequences: 219361 Number of extensions: 785452 Number of successful extensions: 3137 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 2939 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3115 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5596027262 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
