ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd21j01 |
|---|---|
| Clone Library Name | barley_pub |
>SMD2_DROME (Q9VI10) Probable small nuclear ribonucleoprotein Sm D2 (snRNP core| protein D2) (Sm-D2) Length = 119 Score = 102 bits (253), Expect = 8e-22 Identities = 46/53 (86%), Positives = 51/53 (96%) Frame = +1 Query: 355 FSTGPLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMWTE 513 F+TGPLS+L SVKNNTQVLINCRNNKKLLGR++AFDRHCNMVLENV+EMWTE Sbjct: 23 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE 75
>SMD2_MOUSE (P62317) Small nuclear ribonucleoprotein Sm D2 (snRNP core protein| D2) (Sm-D2) Length = 118 Score = 102 bits (253), Expect = 8e-22 Identities = 46/53 (86%), Positives = 51/53 (96%) Frame = +1 Query: 355 FSTGPLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMWTE 513 F+TGPLS+L SVKNNTQVLINCRNNKKLLGR++AFDRHCNMVLENV+EMWTE Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE 76
>SMD2_HUMAN (P62316) Small nuclear ribonucleoprotein Sm D2 (snRNP core protein| D2) (Sm-D2) Length = 118 Score = 102 bits (253), Expect = 8e-22 Identities = 46/53 (86%), Positives = 51/53 (96%) Frame = +1 Query: 355 FSTGPLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMWTE 513 F+TGPLS+L SVKNNTQVLINCRNNKKLLGR++AFDRHCNMVLENV+EMWTE Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE 76
>SMD2_CAEEL (Q18786) Probable small nuclear ribonucleoprotein Sm D2 (snRNP core| protein D2) (Sm-D2) Length = 118 Score = 97.1 bits (240), Expect = 3e-20 Identities = 44/53 (83%), Positives = 49/53 (92%) Frame = +1 Query: 355 FSTGPLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMWTE 513 F+ GPLS+L SVKNN QVLINCRNNKKLLGR++AFDRHCNMVLENV+EMWTE Sbjct: 24 FNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE 76
>SMD2_SCHPO (O14036) Probable small nuclear ribonucleoprotein Sm D2 (snRNP core| protein D2) (Sm-D2) Length = 115 Score = 90.1 bits (222), Expect = 3e-18 Identities = 41/53 (77%), Positives = 47/53 (88%) Frame = +1 Query: 355 FSTGPLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMWTE 513 FS GPLS+L +VKN+ QVLINCRNNKKLL R++AFDRH NMVLENV+EMWTE Sbjct: 25 FSAGPLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTE 77
>SMD2_YEAST (Q06217) Small nuclear ribonucleoprotein Sm D2 (snRNP core protein| D2) (Sm-D2) Length = 110 Score = 71.2 bits (173), Expect = 2e-12 Identities = 30/53 (56%), Positives = 42/53 (79%) Frame = +1 Query: 355 FSTGPLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMWTE 513 F GP+SL+ ++ T V+I+ RNN K++ R++AFDRHCNMVLENV+E+WTE Sbjct: 26 FKHGPMSLINDAMVTRTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE 78
>LSM3_MOUSE (P62311) U6 snRNA-associated Sm-like protein LSm3| Length = 101 Score = 40.4 bits (93), Expect = 0.003 Identities = 18/48 (37%), Positives = 33/48 (68%) Frame = +1 Query: 367 PLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMWT 510 PL L+ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V E T Sbjct: 16 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVT 61
>LSM3_HUMAN (P62310) U6 snRNA-associated Sm-like protein LSm3| Length = 101 Score = 40.4 bits (93), Expect = 0.003 Identities = 18/48 (37%), Positives = 33/48 (68%) Frame = +1 Query: 367 PLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMWT 510 PL L+ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V E T Sbjct: 16 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVT 61
>SMD2_PIG (Q29329) Small nuclear ribonucleoprotein Sm D2 (snRNP core protein| D2) (Sm-D2) (Fragment) Length = 50 Score = 40.0 bits (92), Expect = 0.004 Identities = 18/27 (66%), Positives = 20/27 (74%) Frame = +1 Query: 355 FSTGPLSLLMMSVKNNTQVLINCRNNK 435 F+TGPLS+ S K TQVLINCRN K Sbjct: 24 FNTGPLSVXTQSXKTXTQVLINCRNTK 50
>LSM3_YEAST (P57743) U6 snRNA-associated Sm-like protein LSm3 (SmX4 protein)| Length = 89 Score = 36.6 bits (83), Expect = 0.041 Identities = 18/45 (40%), Positives = 29/45 (64%) Frame = +1 Query: 367 PLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVRE 501 PL LL +++ + +V I R + L+G ++AFD HCN+VL + E Sbjct: 4 PLDLLKLNL--DERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVE 46
>LSM3_SCHPO (Q9Y7M4) Probable U6 snRNA-associated Sm-like protein LSm3| Length = 93 Score = 35.4 bits (80), Expect = 0.092 Identities = 18/48 (37%), Positives = 30/48 (62%) Frame = +1 Query: 367 PLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMWT 510 PL L+ +S+ + V + R +++L GR+ A+D H NMVL + E+ T Sbjct: 10 PLDLVRLSL--DEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVT 55
>RUXX_THEVO (Q97BU5) Putative snRNP Sm-like protein| Length = 83 Score = 31.6 bits (70), Expect = 1.3 Identities = 15/49 (30%), Positives = 30/49 (61%) Frame = +1 Query: 358 STGPLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREM 504 +T P+ +L ++ N VLI+ + N++ G + +D + N+VL+N E+ Sbjct: 7 NTKPMDVLKNALSRN--VLIDVKGNREYSGILEGYDVYMNVVLQNASEI 53
>RUXX_METMA (Q8PZZ9) Putative snRNP Sm-like protein| Length = 72 Score = 31.6 bits (70), Expect = 1.3 Identities = 13/46 (28%), Positives = 28/46 (60%) Frame = +1 Query: 367 PLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREM 504 PL +L ++ +T V++ + ++ G ++ +D H N+VL+N E+ Sbjct: 5 PLDILNNAL--DTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEEL 48
>RUXX_METAC (Q8TL47) Putative snRNP Sm-like protein| Length = 72 Score = 31.6 bits (70), Expect = 1.3 Identities = 13/46 (28%), Positives = 28/46 (60%) Frame = +1 Query: 367 PLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREM 504 PL +L ++ +T V++ + ++ G ++ +D H N+VL+N E+ Sbjct: 5 PLDILNNAL--DTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEEL 48
>RUXG_MEDSA (P24715) Probable small nuclear ribonucleoprotein G (snRNP-G) (Sm| protein G) (Sm-G) (SmG) Length = 81 Score = 31.6 bits (70), Expect = 1.3 Identities = 12/33 (36%), Positives = 23/33 (69%) Frame = +1 Query: 406 QVLINCRNNKKLLGRMRAFDRHCNMVLENVREM 504 Q+ IN + N+ ++G +R FD+ N+V++N E+ Sbjct: 17 QLQINLKANRMIVGTLRGFDQFMNLVVDNTVEV 49
>RUXX_METTH (O26745) Putative snRNP Sm-like protein| Length = 81 Score = 31.2 bits (69), Expect = 1.7 Identities = 15/46 (32%), Positives = 28/46 (60%) Frame = +1 Query: 367 PLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREM 504 PL L S+ N+ V+I + +++ G +++FD H N+VL + E+ Sbjct: 14 PLDALGNSL--NSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEEL 57
>SYL_WOLSU (Q7M926) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 819 Score = 31.2 bits (69), Expect = 1.7 Identities = 15/31 (48%), Positives = 19/31 (61%) Frame = +3 Query: 342 GGGGVQHRAPVPAHDERQEQYPGTYQLPEQQ 434 G G V VPAHDER ++ YQLP++Q Sbjct: 339 GSGAVM---AVPAHDERDFEFAKKYQLPQKQ 366
>HXA1_RAT (O08656) Homeobox protein Hox-A1| Length = 333 Score = 31.2 bits (69), Expect = 1.7 Identities = 21/68 (30%), Positives = 27/68 (39%) Frame = +3 Query: 267 GLFPFRRSPASIRADGGRSSCQCEEGGGGVQHRAPVPAHDERQEQYPGTYQLPEQQEATW 446 G+ F+ S + GG GG GVQ +P H P TYQ ++ Sbjct: 33 GITTFQSCAVSANSCGGDDRFL---GGRGVQITSPHHHHHHHHHPQPATYQTSGNLGVSY 89 Query: 447 SHESI*PS 470 SH S PS Sbjct: 90 SHSSCGPS 97
>RUXX_THEAC (P57670) Putative snRNP Sm-like protein| Length = 83 Score = 30.4 bits (67), Expect = 3.0 Identities = 14/46 (30%), Positives = 28/46 (60%) Frame = +1 Query: 367 PLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREM 504 P+ +L ++ N VLI+ + N++ G + +D + N+VL+N E+ Sbjct: 10 PMDVLKSALSRN--VLIDVKGNREYSGILEGYDVYMNIVLQNASEI 53
>LSM5_MOUSE (P62322) U6 snRNA-associated Sm-like protein LSm5| Length = 90 Score = 30.0 bits (66), Expect = 3.9 Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 3/51 (5%) Frame = +1 Query: 358 STGPLSLLMMSVKNN---TQVLINCRNNKKLLGRMRAFDRHCNMVLENVRE 501 +T P LL + + + +++ I +++K+++G + FD NMVLE+V E Sbjct: 5 TTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE 55
>LSM5_HUMAN (Q9Y4Y9) U6 snRNA-associated Sm-like protein LSm5| Length = 90 Score = 30.0 bits (66), Expect = 3.9 Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 3/51 (5%) Frame = +1 Query: 358 STGPLSLLMMSVKNN---TQVLINCRNNKKLLGRMRAFDRHCNMVLENVRE 501 +T P LL + + + +++ I +++K+++G + FD NMVLE+V E Sbjct: 5 TTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE 55
>YB18_SCHPO (P87173) Hypothetical protein C3D6.08c in chromosome II| Length = 140 Score = 30.0 bits (66), Expect = 3.9 Identities = 11/28 (39%), Positives = 22/28 (78%) Frame = +1 Query: 406 QVLINCRNNKKLLGRMRAFDRHCNMVLE 489 +V++ R+ KKL+G +R+FD+ N++L+ Sbjct: 23 KVIVVLRDGKKLIGILRSFDQFANLMLQ 50
>SYL_FUSNN (Q8RIQ3) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 859 Score = 29.6 bits (65), Expect = 5.0 Identities = 13/24 (54%), Positives = 15/24 (62%) Frame = +3 Query: 372 VPAHDERQEQYPGTYQLPEQQEAT 443 VPAHDER + G Y LP +Q T Sbjct: 340 VPAHDERDFVFAGKYNLPVKQVIT 363
>SYL_CHRVO (Q7P0R1) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 872 Score = 29.6 bits (65), Expect = 5.0 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = +3 Query: 372 VPAHDERQEQYPGTYQLPEQQ 434 VPAHDER ++ YQLP +Q Sbjct: 342 VPAHDERDFEFANKYQLPIKQ 362
>CAS_DROME (Q7M3M8) Transcription factor castor (Protein ming)| Length = 793 Score = 29.3 bits (64), Expect = 6.6 Identities = 18/50 (36%), Positives = 23/50 (46%) Frame = -1 Query: 312 HRRESKPVTCGRETNQISSNPNSLLAIPAQQEPGVTGRTVAAPSSRTGKL 163 H+R S T + S N N L+A QQ PG T T + P+S L Sbjct: 77 HKRISSQNTNCSSSRSCSPNSN-LIAFQPQQYPGATAATPSTPNSHPSNL 125
>SEMG2_ATEGE (Q5U7M7) Semenogelin-2 precursor (Semenogelin II) (SGII)| Length = 514 Score = 29.3 bits (64), Expect = 6.6 Identities = 14/39 (35%), Positives = 19/39 (48%) Frame = +3 Query: 339 EGGGGVQHRAPVPAHDERQEQYPGTYQLPEQQEATWSHE 455 +G V+H PV AHD Q + Y L Q + T S + Sbjct: 60 KGSASVEHTYPVDAHDHDQTRKSKQYDLNAQNKTTKSEK 98
>RS10_DICDI (O77082) 40S ribosomal protein S10| Length = 153 Score = 29.3 bits (64), Expect = 6.6 Identities = 15/44 (34%), Positives = 21/44 (47%) Frame = +3 Query: 372 VPAHDERQEQYPGTYQLPEQQEATWSHESI*PSLQHGSRER*GD 503 VPA ++Q P TY E+ + T + PS G R + GD Sbjct: 88 VPATMKKQASRPSTYTRSEETKRTGASGDFDPSFNRGDRRQGGD 131
>SYL_NEIMA (Q9JW39) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 910 Score = 29.3 bits (64), Expect = 6.6 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = +3 Query: 372 VPAHDERQEQYPGTYQLPEQQ 434 VPAHDER ++ Y LP++Q Sbjct: 347 VPAHDERDFEFAAKYSLPKKQ 367
>CPSF7_MOUSE (Q8BTV2) Cleavage and polyadenylation specificity factor 7| Length = 471 Score = 28.9 bits (63), Expect = 8.6 Identities = 10/18 (55%), Positives = 13/18 (72%) Frame = -3 Query: 352 PPPPSSHWQLLLPPSARI 299 PPPP H+Q L+PP R+ Sbjct: 256 PPPPGIHYQHLMPPPPRL 273
>CPSF7_HUMAN (Q8N684) Cleavage and polyadenylation specificity factor 7| (Cleavage and polyadenylation specificity factor 59 kDa subunit) (CPSF 59 kDa subunit) (Pre-mRNA cleavage factor Im 59-kDa subunit) Length = 471 Score = 28.9 bits (63), Expect = 8.6 Identities = 10/18 (55%), Positives = 13/18 (72%) Frame = -3 Query: 352 PPPPSSHWQLLLPPSARI 299 PPPP H+Q L+PP R+ Sbjct: 256 PPPPGIHYQHLMPPPPRL 273
>CPSF7_RAT (Q5XI29) Cleavage and polyadenylation specificity factor 7| Length = 462 Score = 28.9 bits (63), Expect = 8.6 Identities = 10/18 (55%), Positives = 13/18 (72%) Frame = -3 Query: 352 PPPPSSHWQLLLPPSARI 299 PPPP H+Q L+PP R+ Sbjct: 247 PPPPGIHYQHLMPPPPRL 264
>RSMB_DROME (Q05856) Small nuclear ribonucleoprotein-associated protein B| (snRNP-B) (Sm protein B) (Sm-B) (SmB) Length = 199 Score = 28.9 bits (63), Expect = 8.6 Identities = 11/34 (32%), Positives = 22/34 (64%) Frame = +1 Query: 400 NTQVLINCRNNKKLLGRMRAFDRHCNMVLENVRE 501 N +V I ++++ +G +AFD+H N++L + E Sbjct: 14 NYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEE 47
>SYL_DESPS (Q6AJZ7) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 827 Score = 28.9 bits (63), Expect = 8.6 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = +3 Query: 336 EEGGGGVQHRAPVPAHDERQEQYPGTYQLP 425 E G G V VPAHD+R ++ G Y+LP Sbjct: 336 EYGTGAVM---AVPAHDQRDFEFAGKYKLP 362 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,874,956 Number of Sequences: 219361 Number of extensions: 1591136 Number of successful extensions: 4820 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 4574 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4815 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3812186532 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
