ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd21i14 |
|---|---|
| Clone Library Name | barley_pub |
>YTHD1_MOUSE (P59326) YTH domain protein 1 (Dermatomyositis associated with| cancer putative autoantigen 1 homolog) (DACA-1 homolog) Length = 559 Score = 159 bits (403), Expect = 2e-39 Identities = 74/128 (57%), Positives = 91/128 (71%) Frame = +2 Query: 38 SYNRTDFVTEYKNARFFIIKSYSEDNVHKSIKYGVWASTTNGNRKLDAAYREVKEKEEHY 217 SYN +F K+ R FIIKSYSED++H+SIKY +W ST +GN++LD A+R + K Sbjct: 376 SYNPKEFDWNLKSGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDGAFRSMSSKG--- 432 Query: 218 PIFLLFSVNASAQFCGVAEMTGPVNFDKSVEYWQQDKWTGQFPVKWHIVKDVPNNLFRHI 397 P++LLFSVN S FCGVAEM PV++ S W QDKW G+F VKW VKDVPNN RHI Sbjct: 433 PVYLLFSVNGSGHFCGVAEMKSPVDYGTSAGVWSQDKWKGKFDVKWIFVKDVPNNQLRHI 492 Query: 398 ILENNENK 421 LENN+NK Sbjct: 493 RLENNDNK 500
>YTHD3_PONPY (Q5RFL8) YTH domain protein 3| Length = 585 Score = 159 bits (401), Expect = 3e-39 Identities = 75/128 (58%), Positives = 91/128 (71%) Frame = +2 Query: 38 SYNRTDFVTEYKNARFFIIKSYSEDNVHKSIKYGVWASTTNGNRKLDAAYREVKEKEEHY 217 +YN DF KN R FIIKSYSED++H+SIKY +W ST +GN++LDAAYR + K Sbjct: 403 NYNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKG--- 459 Query: 218 PIFLLFSVNASAQFCGVAEMTGPVNFDKSVEYWQQDKWTGQFPVKWHIVKDVPNNLFRHI 397 P++LLFSVN S FCGVAEM V+++ W QDKW G+F VKW VKDVPNN RHI Sbjct: 460 PLYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHI 519 Query: 398 ILENNENK 421 LENN+NK Sbjct: 520 RLENNDNK 527
>YTHD3_MOUSE (Q8BYK6) YTH domain protein 3| Length = 585 Score = 159 bits (401), Expect = 3e-39 Identities = 75/128 (58%), Positives = 91/128 (71%) Frame = +2 Query: 38 SYNRTDFVTEYKNARFFIIKSYSEDNVHKSIKYGVWASTTNGNRKLDAAYREVKEKEEHY 217 +YN DF KN R FIIKSYSED++H+SIKY +W ST +GN++LDAAYR + K Sbjct: 403 NYNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKG--- 459 Query: 218 PIFLLFSVNASAQFCGVAEMTGPVNFDKSVEYWQQDKWTGQFPVKWHIVKDVPNNLFRHI 397 P++LLFSVN S FCGVAEM V+++ W QDKW G+F VKW VKDVPNN RHI Sbjct: 460 PLYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHI 519 Query: 398 ILENNENK 421 LENN+NK Sbjct: 520 RLENNDNK 527
>YTHD3_HUMAN (Q7Z739) YTH domain protein 3| Length = 585 Score = 159 bits (401), Expect = 3e-39 Identities = 75/128 (58%), Positives = 91/128 (71%) Frame = +2 Query: 38 SYNRTDFVTEYKNARFFIIKSYSEDNVHKSIKYGVWASTTNGNRKLDAAYREVKEKEEHY 217 +YN DF KN R FIIKSYSED++H+SIKY +W ST +GN++LDAAYR + K Sbjct: 403 NYNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKG--- 459 Query: 218 PIFLLFSVNASAQFCGVAEMTGPVNFDKSVEYWQQDKWTGQFPVKWHIVKDVPNNLFRHI 397 P++LLFSVN S FCGVAEM V+++ W QDKW G+F VKW VKDVPNN RHI Sbjct: 460 PLYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHI 519 Query: 398 ILENNENK 421 LENN+NK Sbjct: 520 RLENNDNK 527
>YTHD1_HUMAN (Q9BYJ9) YTH domain protein 1 (Dermatomyositis associated with| cancer putative autoantigen 1) (DACA-1) Length = 559 Score = 157 bits (397), Expect = 1e-38 Identities = 73/128 (57%), Positives = 92/128 (71%) Frame = +2 Query: 38 SYNRTDFVTEYKNARFFIIKSYSEDNVHKSIKYGVWASTTNGNRKLDAAYREVKEKEEHY 217 SYN +F K+ R FIIKSYSED++H+SIKY +W ST +GN++LD+A+R + K Sbjct: 376 SYNPKEFEWNLKSGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDSAFRCMSSKG--- 432 Query: 218 PIFLLFSVNASAQFCGVAEMTGPVNFDKSVEYWQQDKWTGQFPVKWHIVKDVPNNLFRHI 397 P++LLFSVN S FCGVAEM PV++ S W QDKW G+F V+W VKDVPNN RHI Sbjct: 433 PVYLLFSVNGSGHFCGVAEMKSPVDYGTSAGVWSQDKWKGKFDVQWIFVKDVPNNQLRHI 492 Query: 398 ILENNENK 421 LENN+NK Sbjct: 493 RLENNDNK 500
>YTHD2_HUMAN (Q9Y5A9) YTH domain protein 2 (High-glucose-regulated protein 8)| (NY-REN-2 antigen) (CLL-associated antigen KW-14) Length = 579 Score = 156 bits (394), Expect = 2e-38 Identities = 73/128 (57%), Positives = 91/128 (71%) Frame = +2 Query: 38 SYNRTDFVTEYKNARFFIIKSYSEDNVHKSIKYGVWASTTNGNRKLDAAYREVKEKEEHY 217 +YN DF K+ R FIIKSYSED++H+SIKY +W ST +GN++LDAAYR + K Sbjct: 397 NYNPKDFDWNLKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKG--- 453 Query: 218 PIFLLFSVNASAQFCGVAEMTGPVNFDKSVEYWQQDKWTGQFPVKWHIVKDVPNNLFRHI 397 P++LLFSVN S FCGVAEM V+++ W QDKW G+F V+W VKDVPN+ RHI Sbjct: 454 PVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHI 513 Query: 398 ILENNENK 421 LENNENK Sbjct: 514 RLENNENK 521
>YTDC1_RAT (Q9QY02) YTH domain-containing protein 1 (Putative splicing factor| YT521) (RA301-binding protein) Length = 738 Score = 53.9 bits (128), Expect = 1e-07 Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 6/123 (4%) Frame = +2 Query: 71 KNARFFIIKSYSEDNVHKSIKYGVWASTTNGNRKLDAAYREVKEKEEHYPIFLLFSVNAS 250 ++ARFF+IKS + +NV + GVW++ +KL+ A+R + + L+FSV S Sbjct: 356 QDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARS------VILIFSVRES 409 Query: 251 AQFCGVAEMTGPVNFDKSVEYW------QQDKWTGQFPVKWHIVKDVPNNLFRHIILENN 412 +F G A ++ + S +W G F + W +++P H+ N Sbjct: 410 GKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWN 469 Query: 413 ENK 421 E+K Sbjct: 470 EHK 472
>YTDC1_HUMAN (Q96MU7) YTH domain-containing protein 1 (Putative splicing factor| YT521) Length = 727 Score = 53.9 bits (128), Expect = 1e-07 Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 6/123 (4%) Frame = +2 Query: 71 KNARFFIIKSYSEDNVHKSIKYGVWASTTNGNRKLDAAYREVKEKEEHYPIFLLFSVNAS 250 ++ARFF+IKS + +NV + GVW++ +KL+ A+R + + L+FSV S Sbjct: 353 QDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARS------VILIFSVRES 406 Query: 251 AQFCGVAEMTGPVNFDKSVEYW------QQDKWTGQFPVKWHIVKDVPNNLFRHIILENN 412 +F G A ++ + S +W G F + W +++P H+ N Sbjct: 407 GKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWN 466 Query: 413 ENK 421 E+K Sbjct: 467 EHK 469
>TPIS_PROMM (Q7V7D2) Triosephosphate isomerase (EC 5.3.1.1) (TIM)| (Triose-phosphate isomerase) Length = 243 Score = 30.0 bits (66), Expect = 2.3 Identities = 12/32 (37%), Positives = 19/32 (59%) Frame = -2 Query: 351 LTGNWPVHLSCCQYSTLLSKFTGPVISATPQN 256 + GNW +H++C Q + F P+I ATP + Sbjct: 6 IAGNWKMHMTCAQAREYTAMFL-PLIEATPND 36
>OLIG2_HUMAN (Q13516) Oligodendrocyte transcription factor 2 (Oligo2) (Basic| helix-loop-helix protein class B 1) (Protein kinase C-binding protein RACK17) (Protein kinase C-binding protein 2) Length = 323 Score = 29.6 bits (65), Expect = 3.0 Identities = 19/51 (37%), Positives = 22/51 (43%) Frame = -3 Query: 401 ELYGGRDYLEHPSLCAT*QGTGQSTYLAASTPHFCRNSLARSSLQHHRTVH 249 E+YGG HPS C G S L A+T H A + HH VH Sbjct: 175 EIYGGHHAGFHPSACG---GLAHSAPLPAATAH----PAAAAHAAHHPAVH 218
>PIWI_DROME (Q9VKM1) Protein piwi| Length = 843 Score = 29.3 bits (64), Expect = 3.9 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%) Frame = -2 Query: 369 SFTMCHLTGNWPVHL---SCCQYSTLLSKFTGPVISATPQN 256 ++ MCHL NW + CQY+ L+ G + + PQN Sbjct: 794 TYKMCHLYYNWSGTTRVPAVCQYAKKLATLVGTNLHSIPQN 834
>THRC_SYNY3 (P74193) Threonine synthase (EC 4.2.3.1)| Length = 382 Score = 28.9 bits (63), Expect = 5.2 Identities = 15/41 (36%), Positives = 23/41 (56%) Frame = +2 Query: 122 KSIKYGVWASTTNGNRKLDAAYREVKEKEEHYPIFLLFSVN 244 +++ YG +GN D A V++ EHYP+ L+ SVN Sbjct: 151 QALIYGAEVIAIDGN--FDDALTTVRQLSEHYPVTLVNSVN 189
>SPAN_SALTY (P40613) Surface presentation of antigens protein spaN (Invasion| protein invJ) Length = 336 Score = 28.9 bits (63), Expect = 5.2 Identities = 14/50 (28%), Positives = 24/50 (48%) Frame = +2 Query: 233 FSVNASAQFCGVAEMTGPVNFDKSVEYWQQDKWTGQFPVKWHIVKDVPNN 382 +SVN A+ G + + + VE+ D+W P +WH+ +D N Sbjct: 274 YSVNIQARQAGEFSL---IPSNTQVEHRLHDQWQNGNPQRWHLTRDDQQN 320
>PYC_BACSU (Q9KWU4) Pyruvate carboxylase (EC 6.4.1.1) (Pyruvic carboxylase)| (PYC) Length = 1148 Score = 28.9 bits (63), Expect = 5.2 Identities = 14/47 (29%), Positives = 25/47 (53%) Frame = +2 Query: 272 EMTGPVNFDKSVEYWQQDKWTGQFPVKWHIVKDVPNNLFRHIILENN 412 EM G FD + + ++D W ++ K+VPN LF+ ++ +N Sbjct: 576 EMWGGATFDVAYRFLKEDPWKRLEDLR----KEVPNTLFQMLLRSSN 618
>FINC_NOTVI (Q91400) Fibronectin (FN) (Fragment)| Length = 190 Score = 28.5 bits (62), Expect = 6.7 Identities = 14/39 (35%), Positives = 18/39 (46%) Frame = -1 Query: 376 WNILHYVPLNRELASPLILLPVLHTFVEIHWPGHLCNTT 260 WN + Y L + I V HTF + H GH+ N T Sbjct: 93 WNCVAYSQLRDQCIVDGITYDVNHTFTKRHEEGHMMNCT 131
>LNT_CHLTR (O84539) Apolipoprotein N-acyltransferase (EC 2.3.1.-) (ALP| N-acyltransferase) Length = 542 Score = 28.1 bits (61), Expect = 8.8 Identities = 10/23 (43%), Positives = 14/23 (60%) Frame = +1 Query: 205 GRTLSHFSVVFGEC*CTVLWCCR 273 G LS+ + +F C V+WCCR Sbjct: 88 GILLSYLATLFASFSCLVVWCCR 110
>ZNF93_HUMAN (P35789) Zinc finger protein 93 (Zinc finger protein 505) (Zinc| finger protein HTF34) Length = 620 Score = 28.1 bits (61), Expect = 8.8 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%) Frame = +2 Query: 281 GPVNF-DKSVEYWQQDKWTGQFPVKWHIVKDVPNNLFRHIILENNEN 418 GP+ F D ++E+ ++ WH + NL+R+++LEN N Sbjct: 2 GPLQFRDVAIEFSLEE---------WHCLDTAQRNLYRNVMLENYSN 39
>TPIS_SYNPX (Q7U804) Triosephosphate isomerase (EC 5.3.1.1) (TIM)| (Triose-phosphate isomerase) Length = 243 Score = 28.1 bits (61), Expect = 8.8 Identities = 11/32 (34%), Positives = 18/32 (56%) Frame = -2 Query: 351 LTGNWPVHLSCCQYSTLLSKFTGPVISATPQN 256 + GNW +H++C Q ++ F P I PQ+ Sbjct: 6 IAGNWKMHMTCAQARDYMAAFL-PQIERAPQD 36
>OLIG2_MOUSE (Q9EQW6) Oligodendrocyte transcription factor 2 (Oligo2)| Length = 323 Score = 28.1 bits (61), Expect = 8.8 Identities = 18/51 (35%), Positives = 21/51 (41%) Frame = -3 Query: 401 ELYGGRDYLEHPSLCAT*QGTGQSTYLAASTPHFCRNSLARSSLQHHRTVH 249 E+YGG HPS C G S L +T H A + HH VH Sbjct: 175 EIYGGHHAGFHPSACG---GLAHSAPLPTATAH----PAAAAHAAHHPAVH 218 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,262,236 Number of Sequences: 219361 Number of extensions: 1247457 Number of successful extensions: 3336 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 3259 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3327 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2286875994 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
