ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd21h13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT016785.1| Zea mays clone Contig618 mRNA sequence 60 8e-06
2gb|AY105153.1| Zea mays PCO138377 mRNA sequence 60 8e-06
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
4dbj|AP004070.3| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
5dbj|AK120755.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
6gb|AC008415.6| Homo sapiens chromosome 5 clone CTC-283O18, compl... 44 0.46
7gb|AC132944.3| Mus musculus BAC clone RP24-284N8 from chromosome... 42 1.8
8gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 42 1.8
9gb|AC093481.8| Mus musculus chromosome 18, clone RP23-62E19, com... 40 7.2
10gb|AC122255.2| Mus musculus BAC clone RP23-178F22 from chromosom... 40 7.2
11gb|AC113307.12| Mus musculus chromosome 3, clone RP23-437A2, com... 40 7.2
12ref|XM_759835.1| Theileria parva strain Muguga small nuclear rib... 40 7.2
13gb|AC161438.6| Mus musculus chromosome 18, clone RP23-62E1, comp... 40 7.2
14gb|AC160109.2| Mus musculus BAC clone RP24-169I22 from chromosom... 40 7.2
15emb|CR762431.9| Zebrafish DNA sequence from clone DKEY-220O10 in... 40 7.2
16emb|BX546489.13| Zebrafish DNA sequence from clone CH211-258F14 ... 40 7.2
17emb|AL928645.6| Mouse DNA sequence from clone RP23-452N23 on chr... 40 7.2
18emb|AL929020.10| Mouse DNA sequence from clone RP23-291L24 on ch... 40 7.2
19emb|BX294103.11| Zebrafish DNA sequence from clone CH211-257A8 i... 40 7.2 
>gb|BT016785.1| Zea mays clone Contig618 mRNA sequence
          Length = 1899

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                
Query: 2   acgaggtnaaggtttcggaggacggcaccgtccgcgccacggacttcaagaag 54
           ||||||| ||||| || || ||||||||||| |||||||| ||||||||||||
Sbjct: 233 acgaggtcaaggtctccgaagacggcaccgtgcgcgccaccgacttcaagaag 285
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>gb|AY105153.1| Zea mays PCO138377 mRNA sequence
          Length = 2018

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                
Query: 2   acgaggtnaaggtttcggaggacggcaccgtccgcgccacggacttcaagaag 54
           ||||||| ||||| || || ||||||||||| |||||||| ||||||||||||
Sbjct: 300 acgaggtcaaggtctccgaagacggcaccgtgcgcgccaccgacttcaagaag 352
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                       
Query: 2       acgaggtnaaggtttcggaggacggcaccgtccgcgccacggacttcaagaaggta 57
               ||||||| ||||| ||||| || || ||||| |||||||| |||||||||||||||
Sbjct: 7490607 acgaggtcaaggtgtcggacgaggggaccgtgcgcgccaccgacttcaagaaggta 7490662
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>dbj|AP004070.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1705_E12
          Length = 191416

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                     
Query: 2     acgaggtnaaggtttcggaggacggcaccgtccgcgccacggacttcaagaaggta 57
             ||||||| ||||| ||||| || || ||||| |||||||| |||||||||||||||
Sbjct: 84313 acgaggtcaaggtgtcggacgaggggaccgtgcgcgccaccgacttcaagaaggta 84368
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>dbj|AK120755.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007B06, full
           insert sequence
          Length = 1927

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                                
Query: 2   acgaggtnaaggtttcggaggacggcaccgtccgcgccacggacttcaagaag 54
           ||||||| ||||| ||||| || || ||||| |||||||| ||||||||||||
Sbjct: 280 acgaggtcaaggtgtcggacgaggggaccgtgcgcgccaccgacttcaagaag 332
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>gb|AC008415.6| Homo sapiens chromosome 5 clone CTC-283O18, complete sequence
          Length = 168368

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 359   agaaattgtaactgaggatgatagat 384
             ||||||||| ||||||||||||||||
Sbjct: 53351 agaaattgtgactgaggatgatagat 53326
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>gb|AC132944.3| Mus musculus BAC clone RP24-284N8 from chromosome 3, complete sequence
          Length = 145784

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 108   gtgatctgcgctgtgctgggctgtg 132
             |||||||||||||||||| ||||||
Sbjct: 35322 gtgatctgcgctgtgctgtgctgtg 35298
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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 21      ggacggcaccgtccgcgccac 41
               |||||||||||||||||||||
Sbjct: 1198721 ggacggcaccgtccgcgccac 1198741
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>gb|AC093481.8| Mus musculus chromosome 18, clone RP23-62E19, complete sequence
          Length = 242587

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 514    aacatgtatagcttcagctt 533
              ||||||||||||||||||||
Sbjct: 181343 aacatgtatagcttcagctt 181324
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>gb|AC122255.2| Mus musculus BAC clone RP23-178F22 from chromosome 3, complete sequence
          Length = 185132

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 514    aacatgtatagcttcagctt 533
              ||||||||||||||||||||
Sbjct: 158520 aacatgtatagcttcagctt 158539
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>gb|AC113307.12| Mus musculus chromosome 3, clone RP23-437A2, complete sequence
          Length = 202835

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 514   aacatgtatagcttcagctt 533
             ||||||||||||||||||||
Sbjct: 61828 aacatgtatagcttcagctt 61847
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>ref|XM_759835.1| Theileria parva strain Muguga small nuclear ribonucleoprotein B
           (TP02_0362) partial mRNA
          Length = 468

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 406 tgaggttgaagttgagctgg 425
           ||||||||||||||||||||
Sbjct: 431 tgaggttgaagttgagctgg 412
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>gb|AC161438.6| Mus musculus chromosome 18, clone RP23-62E1, complete sequence
          Length = 198865

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 514    aacatgtatagcttcagctt 533
              ||||||||||||||||||||
Sbjct: 183542 aacatgtatagcttcagctt 183561
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>gb|AC160109.2| Mus musculus BAC clone RP24-169I22 from chromosome 13, complete
             sequence
          Length = 151819

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 375   gatgatagatagatgtaatt 394
             ||||||||||||||||||||
Sbjct: 93127 gatgatagatagatgtaatt 93108
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>emb|CR762431.9| Zebrafish DNA sequence from clone DKEY-220O10 in linkage group 13,
             complete sequence
          Length = 96564

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 259   ttttggttgggggtggaggt 278
             ||||||||||||||||||||
Sbjct: 10731 ttttggttgggggtggaggt 10712
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>emb|BX546489.13| Zebrafish DNA sequence from clone CH211-258F14 in linkage group 3,
              complete sequence
          Length = 148304

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 341    gatgaagtgtccttttgtagaaat 364
              |||||||||| |||||||||||||
Sbjct: 130519 gatgaagtgtgcttttgtagaaat 130542
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>emb|AL928645.6| Mouse DNA sequence from clone RP23-452N23 on chromosome 4 Contains part
              of the Ptprd gene for receptor type protein tyrosine
              phosphatase D, complete sequence
          Length = 172513

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 255    taatttttggttgggggtgg 274
              ||||||||||||||||||||
Sbjct: 154473 taatttttggttgggggtgg 154492
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>emb|AL929020.10| Mouse DNA sequence from clone RP23-291L24 on chromosome 2, complete
             sequence
          Length = 158398

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 164   gggtagcagcaggctggtct 183
             ||||||||||||||||||||
Sbjct: 54748 gggtagcagcaggctggtct 54767
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>emb|BX294103.11| Zebrafish DNA sequence from clone CH211-257A8 in linkage group 9,
              complete sequence
          Length = 193969

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 426    taataaagcttgaaatttgt 445
              ||||||||||||||||||||
Sbjct: 160971 taataaagcttgaaatttgt 160952


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,140,599
Number of Sequences: 3902068
Number of extensions: 6140599
Number of successful extensions: 103405
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103316
Number of HSP's gapped (non-prelim): 89
length of query: 534
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 511
effective length of database: 17,143,297,704
effective search space: 8760225126744
effective search space used: 8760225126744
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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