Clone Information

BLAST Search Result

Clone Name	basd21h02
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ATCU_ECOLI (Q59385) Copper-transporting P-type ATPase (EC 3.6.3.4)	42	4e-04
2	ATCU_ECO57 (Q8XD24) Copper-transporting P-type ATPase (EC 3.6.3.4)	42	4e-04
3	ATCU_SALTY (Q8ZR95) Copper-transporting P-type ATPase (EC 3.6.3.4)	36	0.020
4	ATCU_SALTI (Q8Z8S4) Copper-transporting P-type ATPase (EC 3.6.3.4)	36	0.020
5	CADA2_LISMO (Q60048) Probable cadmium-transporting ATPase (EC 3....	36	0.020
6	ATCU_RHIME (Q9X5X3) Copper-transporting P-type ATPase (EC 3.6.3.4)	36	0.025
7	ATCU_YERPE (Q8ZCA7) Copper-transporting P-type ATPase (EC 3.6.3.4)	35	0.043
8	CCS1_YEAST (P40202) Superoxide dismutase 1 copper chaperone	35	0.057
9	ATCU2_RHIME (P58342) Copper-transporting ATPase 2 (EC 3.6.3.4)	34	0.074
10	ATZN_ECOLI (P37617) Lead, cadmium, zinc and mercury-transporting...	34	0.097
11	ATCU1_RHIME (P58341) Copper-transporting ATPase 1 (EC 3.6.3.4)	33	0.17
12	ATZN_SYNY3 (Q59998) Zinc-transporting ATPase (EC 3.6.3.5) (Zn(2+...	33	0.17
13	RL31_CYAPA (Q9XGL4) 60S ribosomal protein L31	31	0.82
14	MERA_THIFE (P17239) Mercuric reductase (EC 1.16.1.1) (Hg(II) red...	31	0.82
15	CO4A1_CAEEL (P17139) Collagen alpha-1(IV) chain precursor	30	1.1
16	CADA1_LISMO (P58414) Probable cadmium-transporting ATPase (EC 3....	30	1.1
17	MERA_SHEPU (Q54465) Mercuric reductase (EC 1.16.1.1) (Hg(II) red...	30	1.1
18	ATOX1_CANFA (Q9TT99) Copper transport protein ATOX1 (Metal trans...	30	1.8
19	PRP5_GIBZE (Q4IP34) Pre-mRNA-processing ATP-dependent RNA helica...	30	1.8
20	PHK1_RHIME (Q92T74) Probable phosphoketolase 1 (EC 4.1.2.-)	30	1.8
21	YL177_MIMIV (Q5UPN8) Hypothetical protein L177	29	2.4
22	RL31_PAROL (Q9IA76) 60S ribosomal protein L31	29	2.4
23	IBB_LENCU (Q8W4Y8) Bowman-Birk type proteinase inhibitor precurs...	29	3.1
24	ATOX1_SHEEP (Q9XT28) Copper transport protein ATOX1 (Metal trans...	29	3.1
25	RB15B_HUMAN (Q8NDT2) Putative RNA-binding protein 15B (RNA-bindi...	28	4.1
26	COPA_BACSU (O32220) Copper-transporting P-type ATPase copA (EC 3...	28	4.1
27	YQKD_BACSU (P54567) Hypothetical protein yqkD	28	4.1
28	CSD_CHLPN (Q9Z7L5) Probable cysteine desulfurase (EC 2.8.1.7)	28	5.3
29	MTB1_BREEP (P10283) Modification methylase BepI (EC 2.1.1.37) (C...	28	5.3
30	TBX2_CANFA (Q863A2) T-box transcription factor TBX2 (T-box prote...	28	5.3
31	OMB_DROME (Q24432) Optomotor-blind protein (Lethal(1)optomotor-b...	28	6.9
32	GP73_HUMAN (Q8NBJ4) Golgi phosphoprotein 2 (Golgi membrane prote...	28	6.9
33	IF2_SALTY (Q9ZF31) Translation initiation factor IF-2	28	6.9
34	IF2_SALTI (Q8Z3H7) Translation initiation factor IF-2	28	6.9
35	IF2_SALPA (Q5PLB0) Translation initiation factor IF-2	28	6.9
36	IF2_SALCH (Q57JH9) Translation initiation factor IF-2	28	6.9
37	YEPC_SCHPO (O13942) Hypothetical protein C23H3.12c in chromosome I	28	6.9
38	LVA_DROME (Q8MSS1) Protein lava lamp	28	6.9
39	IF2_KLEOX (Q9ZF28) Translation initiation factor IF-2	28	6.9
40	RNB_BUCBP (Q89AM0) Exoribonuclease 2 (EC 3.1.13.1) (Exoribonucle...	28	6.9
41	IF2_SHISS (Q3YX73) Translation initiation factor IF-2	28	6.9
42	IF2_SHIDS (Q32BG5) Translation initiation factor IF-2	28	6.9
43	IF2_ECOLI (P0A705) Translation initiation factor IF-2	28	6.9
44	IF2_ECOL6 (P59587) Translation initiation factor IF-2	28	6.9
45	IF2_ECO57 (P0A706) Translation initiation factor IF-2	28	6.9
46	IF2_SHIFL (Q83JF9) Translation initiation factor IF-2	28	6.9
47	IF2_SHIBS (Q31W47) Translation initiation factor IF-2	28	6.9
48	YKD1_CAEEL (Q03560) Hypothetical protein B0464.2 in chromosome III	28	6.9
49	IF2_ENTCL (Q9ZF25) Translation initiation factor IF-2	28	6.9
50	RL23_MYCGA (O52334) 50S ribosomal protein L23	28	6.9
51	YDCP_ECOLI (P76104) Putative protease ydcP precursor (EC 3.4.-.-)	27	9.1
52	PRP1_MANSE (O44249) Phenoloxidase subunit 1 (EC 1.14.18.1) (proP...	27	9.1
53	MAP1_STAAU (Q53599) Protein map precursor (MHC class II analog p...	27	9.1
54	Y1129_METJA (Q58529) Hypothetical protein MJ1129	27	9.1
55	HISX_BACLD (Q65EF9) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)	27	9.1
56	ATOX1_MOUSE (O08997) Copper transport protein ATOX1 (Metal trans...	27	9.1
57	CCMA_PSEPK (Q88EX5) Cytochrome c biogenesis ATP-binding export p...	27	9.1
58	R51A1_HUMAN (Q96B01) RAD51-associated protein 1 (RAD51-interacti...	27	9.1

>ATCU_ECOLI (Q59385) Copper-transporting P-type ATPase (EC 3.6.3.4)|
          Length = 833

 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 20/55 (36%), Positives = 29/55 (52%)
 Frame = +2

Query: 179 MDCEGCERRVKNAVKSIRGVTSVAVNPKMSKVTVTGHVEPRKVLERVKSTGKAAE 343
           M C  C  RV+NA++S+ GVT   VN       V G   P+ +++ V+  G  AE
Sbjct: 107 MSCASCVTRVQNALQSVPGVTQARVNLAERTALVMGSASPQDLVQAVEKAGYGAE 161

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>ATCU_ECO57 (Q8XD24) Copper-transporting P-type ATPase (EC 3.6.3.4)|
          Length = 833

 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 20/55 (36%), Positives = 29/55 (52%)
 Frame = +2

Query: 179 MDCEGCERRVKNAVKSIRGVTSVAVNPKMSKVTVTGHVEPRKVLERVKSTGKAAE 343
           M C  C  RV+NA++S+ GVT   VN       V G   P+ +++ V+  G  AE
Sbjct: 107 MSCASCVTRVQNALQSVPGVTQARVNLAERTALVMGSASPQDLVQAVEKAGYGAE 161

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>ATCU_SALTY (Q8ZR95) Copper-transporting P-type ATPase (EC 3.6.3.4)|
          Length = 832

 Score = 36.2 bits (82), Expect = 0.020
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = +2

Query: 179 MDCEGCERRVKNAVKSIRGVTSVAVNPKMSKVTVTGHVEPRKVLERVKSTGKAAE 343
           M C  C  RV++A++S+ GVT   VN       V G      +++ V+  G  AE
Sbjct: 106 MSCASCVTRVQHALQSVPGVTQARVNLAERTALVMGSASAADLVQAVEKAGYGAE 160

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>ATCU_SALTI (Q8Z8S4) Copper-transporting P-type ATPase (EC 3.6.3.4)|
          Length = 832

 Score = 36.2 bits (82), Expect = 0.020
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = +2

Query: 179 MDCEGCERRVKNAVKSIRGVTSVAVNPKMSKVTVTGHVEPRKVLERVKSTGKAAE 343
           M C  C  RV++A++S+ GVT   VN       V G      +++ V+  G  AE
Sbjct: 106 MSCASCVTRVQHALQSVPGVTQARVNLAERTALVMGSASAADLVQAVEKAGYGAE 160

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>CADA2_LISMO (Q60048) Probable cadmium-transporting ATPase (EC 3.6.3.3) (Cadmium|
           efflux ATPase)
          Length = 711

 Score = 36.2 bits (82), Expect = 0.020
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +2

Query: 179 MDCEGCERRVKNAVKSIRGVTSVAVNPKMSKVTVTGHVEPRKV 307
           + C  C  + +  VK I GVT   VN   SK+TVTG    ++V
Sbjct: 12  LSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTGEASIQQV 54

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>ATCU_RHIME (Q9X5X3) Copper-transporting P-type ATPase (EC 3.6.3.4)|
          Length = 827

 Score = 35.8 bits (81), Expect = 0.025
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +2

Query: 179 MDCEGCERRVKNAVKSIRGVTSVAVNPKMSKVTV--TGHVEPRKVLERVKSTGKA 337
           M C  C RRV+ A+ ++ GV S  VN    + TV   G  E   VL  V+  G A
Sbjct: 24  MTCASCVRRVEKAIAAVPGVASANVNLATERATVQFNGVPETTSVLRAVEKAGYA 78

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>ATCU_YERPE (Q8ZCA7) Copper-transporting P-type ATPase (EC 3.6.3.4)|
          Length = 961

 Score = 35.0 bits (79), Expect = 0.043
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +2

Query: 179 MDCEGCERRVKNAVKSIRGVTSVAVNPKMSKVTVTGHVEPRKVLERVKSTGKAAEM 346
           M C  C  +V+NA++ + GV    VN       VTG      ++  VK+ G  AE+
Sbjct: 235 MSCASCVSKVQNALQRVDGVQVARVNLAERSALVTGTQNNEALIAAVKNAGYGAEI 290



 Score = 34.3 bits (77), Expect = 0.074
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = +2

Query: 179 MDCEGCERRVKNAVKSIRGVTSVAVNPKMSKVTVTGHVEPRKVLERVKSTGKAA 340
           + C  C +RVK A++S   V    VN   +K  VTG  +   ++E +K TG  A
Sbjct: 12  LSCMNCAQRVKAALESREDVHHAEVNVHYAK--VTGEADTHALIETIKQTGYQA 63

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>CCS1_YEAST (P40202) Superoxide dismutase 1 copper chaperone|
          Length = 249

 Score = 34.7 bits (78), Expect = 0.057
 Identities = 14/56 (25%), Positives = 30/56 (53%)
 Frame = +2

Query: 173 VKMDCEGCERRVKNAVKSIRGVTSVAVNPKMSKVTVTGHVEPRKVLERVKSTGKAA 340
           + M CE C   +K  +K++ G+ S+  + +   ++V   V P  ++  +++ GK A
Sbjct: 13  IPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGKDA 68

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>ATCU2_RHIME (P58342) Copper-transporting ATPase 2 (EC 3.6.3.4)|
          Length = 827

 Score = 34.3 bits (77), Expect = 0.074
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +2

Query: 179 MDCEGCERRVKNAVKSIRGVTSVAVNPKMSKVTV--TGHVEPRKVLERVKSTGKA 337
           M C  C RRV+ A+ ++ GV S  VN    + TV   G  +   VL  ++  G A
Sbjct: 24  MTCASCVRRVEKAITAVPGVASANVNLATERATVQFDGEPDTLAVLHAIEKAGYA 78



 Score = 33.1 bits (74), Expect = 0.17
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +2

Query: 179 MDCEGCERRVKNAVKSIRGVTSVAVNPKMSKVTVT 283
           M C  C  RV+ A+K++ GV   AVN    K TV+
Sbjct: 91  MTCASCVSRVEKALKAVPGVADAAVNLATEKATVS 125

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>ATZN_ECOLI (P37617) Lead, cadmium, zinc and mercury-transporting ATPase (EC|
           3.6.3.3) (EC 3.6.3.5)
          Length = 732

 Score = 33.9 bits (76), Expect = 0.097
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +2

Query: 179 MDCEGCERRVKNAVKSIRGVTSVAVNPKMSKVTVTGHVEPRKVLE 313
           MDC  C R+V+NAV+ + GV  V V     K+ V    + R  +E
Sbjct: 57  MDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVE 101

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>ATCU1_RHIME (P58341) Copper-transporting ATPase 1 (EC 3.6.3.4)|
          Length = 826

 Score = 33.1 bits (74), Expect = 0.17
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +2

Query: 179 MDCEGCERRVKNAVKSIRGVTSVAVN--PKMSKVTVTGHVEPRKVLERVKSTG 331
           M C  C RRV+ A+ ++ GV S  VN   + + V  TG  +   VL  ++  G
Sbjct: 24  MTCASCVRRVEKAISAVPGVASATVNLATERASVQFTGAPDTGGVLLAIEKAG 76

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>ATZN_SYNY3 (Q59998) Zinc-transporting ATPase (EC 3.6.3.5)|
           (Zn(2+)-translocating P-type ATPase)
          Length = 721

 Score = 33.1 bits (74), Expect = 0.17
 Identities = 16/61 (26%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
 Frame = +2

Query: 134 LRKKRPQQTVNIKVK-MDCEGCERRVKNAVKSIRGVTSVAVNPKMSKVTVTGHVEPRKVL 310
           + +  P +T  ++V  MDC  C+ +++ +++ ++GV   +V     ++TVT   +P++V 
Sbjct: 1   MTQSSPLKTQQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVT--YDPKQVS 58

Query: 311 E 313
           E
Sbjct: 59  E 59

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>RL31_CYAPA (Q9XGL4) 60S ribosomal protein L31|
          Length = 119

 Score = 30.8 bits (68), Expect = 0.82
 Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 9/98 (9%)
 Frame = +2

Query: 113 ETKESLKLRKKRPQQTVNIKVKMDCEGCERRVKNAVKSIR-------GVTSVAVNPKMSK 271
           E K+S        + T+N+  ++   G ++R   AVK I+       G T V V+P+++K
Sbjct: 5   ENKKSRAAEIVTREYTINLHKRLHGVGFKKRAPRAVKEIKKFASKIMGTTDVRVDPRLNK 64

Query: 272 VTVTGHVE--PRKVLERVKSTGKAAEMWPYVPYTLATY 379
                 +   P +V  R+       E      YTL TY
Sbjct: 65  FVWNQGIRSVPYRVRVRLARKRNDDEDAKEKLYTLVTY 102

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>MERA_THIFE (P17239) Mercuric reductase (EC 1.16.1.1) (Hg(II) reductase)|
          Length = 547

 Score = 30.8 bits (68), Expect = 0.82
 Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
 Frame = +2

Query: 179 MDCEGCERRVKNAVKSIRGVTSVAVN--PKMSKVTVTGHVEPRKVLERVKSTG 331
           M C+GC   V+ A++ + GV    V+     ++V + G V  +++++ V ++G
Sbjct: 14  MTCDGCAAHVRKALEGVPGVREAQVSYPDATARVVLEGEVPMQRLIKAVVASG 66

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>CO4A1_CAEEL (P17139) Collagen alpha-1(IV) chain precursor|
          Length = 1759

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 21/50 (42%), Positives = 25/50 (50%)
 Frame = +1

Query: 73   GRLGSPL*FVQHDGDKGIPQAQEEAATADGEHQGEDGLRGLREESQERRQ 222
            G+LG+P       GD G P A  E    D  +QG DG  GLR ES +  Q
Sbjct: 1203 GQLGTP-------GDVGYPGAPGE--NGDNGNQGRDGQPGLRGESGQPGQ 1243

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>CADA1_LISMO (P58414) Probable cadmium-transporting ATPase (EC 3.6.3.3) (Cadmium|
           efflux ATPase)
          Length = 707

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +2

Query: 143 KRPQQTVNIKVKMDCEGCERRVKNAVKSIRGVTSVAVNPKMSKVTVTG 286
           K  +QT      M C  C  + +  VK++ GVT   VN    K++V G
Sbjct: 3   KASKQTTYRVDGMSCTNCAGKFEKNVKNLEGVTDAKVNFGAGKISVYG 50

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>MERA_SHEPU (Q54465) Mercuric reductase (EC 1.16.1.1) (Hg(II) reductase)|
          Length = 557

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +2

Query: 179 MDCEGCERRVKNAVKSIRGVTSVAVNPKMSKVTVT--GHVEPRKVLERVKSTGKAAE 343
           M C  C   VK A+ +I GV  V ++ + ++ T+T  G V    ++  +++ G  A+
Sbjct: 9   MTCPSCVAHVKEALDAIEGVNKVEISYENARATITTNGGVSVTVLIGAIEALGYIAK 65

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>ATOX1_CANFA (Q9TT99) Copper transport protein ATOX1 (Metal transport protein|
           ATX1)
          Length = 68

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +2

Query: 173 VKMDCEGCERRVKNAVKSIRGVTSVAVNPKMSKVTVTGHVEPRKVLERVKSTGKA 337
           V M CEGC   V   +  + GV    ++    KV +        +LE ++ TGKA
Sbjct: 8   VDMTCEGCSNAVSRVLNKLGGV-EFDIDLPNKKVCINSEHSVDILLETLEKTGKA 61

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>PRP5_GIBZE (Q4IP34) Pre-mRNA-processing ATP-dependent RNA helicase PRP5 (EC|
           3.6.1.-)
          Length = 1227

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
 Frame = +2

Query: 83  DHLSDLCSMTETKESLKLRKKR--PQQTVNIKVKMDCEGCERRVKNAVKSIRGVTSVAVN 256
           + L+ L +  + KES   ++K   P QT N+  +MD +      K    S+  + S A  
Sbjct: 227 ERLAKLEAWKKKKESASQKQKEVNPSQTRNLLAEMDKKASGASSKTVSPSVSAIASPAAT 286

Query: 257 PKMSK--VTVTGHVEPRKVLER 316
           P +     + +G  +P+ + ++
Sbjct: 287 PTVESPAASYSGKFDPKAIAKK 308

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>PHK1_RHIME (Q92T74) Probable phosphoketolase 1 (EC 4.1.2.-)|
          Length = 789

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 27/103 (26%), Positives = 39/103 (37%), Gaps = 4/103 (3%)
 Frame = -3

Query: 313 LQHLARLHVPRHRHLAHLGVHGHARHTPNRFDGVLDSPLAALAIHLHLDVHRLLWPLLPE 134
           L +    HV R  H      +G +   P   D V++     + ++L  D + LL      
Sbjct: 503 LNYFLSSHVWRQDH------NGFSHQDPGFIDHVVNKKADIIRVYLPPDANTLLSVTDH- 555

Query: 133 LEGFLCLRHAAQIREVIQGAHD----LTQLQAIKRCCTRXGVW 17
                CLR    I  V+ G       LT  QA+K C    G+W
Sbjct: 556 -----CLRSRNYINVVVAGKQPSPQWLTMDQAVKHCTEGLGIW 593

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>YL177_MIMIV (Q5UPN8) Hypothetical protein L177|
          Length = 379

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
 Frame = +2

Query: 89  LSDLCSMTETKESLKLRKKRPQQTVNIKVKMD----CEGCERRVKNAVKSIRGVTSVAVN 256
           + ++C++T   +  KL KK+ +   N KVK D    CE    R+ +  + I  V      
Sbjct: 216 IEEICNLTSEIDKTKLDKKQLKLLENFKVKFDSEFICEIIYSRMLHDFEDILQVEDTYFC 275

Query: 257 PKMSK 271
           PK+ K
Sbjct: 276 PKIFK 280

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>RL31_PAROL (Q9IA76) 60S ribosomal protein L31|
          Length = 124

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 9/85 (10%)
 Frame = +2

Query: 152 QQTVNIKVKMDCEGCERRVKNAVKSIR-------GVTSVAVNPKMSKVTVTGHVE--PRK 304
           + T+N+  ++   G ++R   A+K IR       G   V ++ +++K   +  V   P +
Sbjct: 23  EYTINVHKRIHGVGFKKRAPRAIKEIRKFAVKEMGTPDVRIDTRLNKAVWSKGVRNVPYR 82

Query: 305 VLERVKSTGKAAEMWPYVPYTLATY 379
           +  R+       E  P   YTL TY
Sbjct: 83  IRVRLSRKRNEDEDSPNKLYTLVTY 107

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>IBB_LENCU (Q8W4Y8) Bowman-Birk type proteinase inhibitor precursor|
           (Trypsin/chymotrypsin inhibitor)
          Length = 110

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -1

Query: 282 VTVTLLILGFTATLVTPRIDLTAFLT 205
           + + L +LGFTA +V  R D T+F+T
Sbjct: 12  LALMLFLLGFTANVVDARFDSTSFIT 37

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>ATOX1_SHEEP (Q9XT28) Copper transport protein ATOX1 (Metal transport protein|
           ATX1) (Copper chaperone SAH)
          Length = 68

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +2

Query: 173 VKMDCEGCERRVKNAVKSIRGVTSVAVNPKMSKVTVTGHVEPRKVLERVKSTGKA 337
           V M CEGC   V   +  + GV    ++    KV +        +LE +  TGKA
Sbjct: 8   VDMTCEGCSNAVTRVLNKLGGV-QFDIDLPNKKVCINSEHSVDTLLETLGKTGKA 61

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>RB15B_HUMAN (Q8NDT2) Putative RNA-binding protein 15B (RNA-binding motif|
           protein 15B)
          Length = 563

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +1

Query: 160 GEHQGEDGLRGLREESQERRQIDSGCDERGR 252
           GE  G DG RGL +  +ERR+  S   +RGR
Sbjct: 248 GERWGADGDRGLPKPWEERRKRRSLSSDRGR 278

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>COPA_BACSU (O32220) Copper-transporting P-type ATPase copA (EC 3.6.3.-)|
           (Protein copA)
          Length = 803

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 179 MDCEGCERRVKNAVKSIRGVTSVAVNPKMSKVTV 280
           M C  C  R++  +  I GV +  VN  +  VTV
Sbjct: 83  MTCAACANRIEKRLNKIEGVANAPVNFALETVTV 116

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>YQKD_BACSU (P54567) Hypothetical protein yqkD|
          Length = 305

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 24/79 (30%), Positives = 31/79 (39%), Gaps = 16/79 (20%)
 Frame = -3

Query: 274 HLAHLGVHGHARHTPNRF--------DG----VLDSPLAA----LAIHLHLDVHRLLWPL 143
           H   +G+HG +               DG    + D P A     LA  L  +     WPL
Sbjct: 150 HRGLIGIHGESMGAVTALLYAGAHCSDGADFYIADCPFACFDEQLAYRLRAEYRLPSWPL 209

Query: 142 LPELEGFLCLRHAAQIREV 86
           LP  + FL LR   + REV
Sbjct: 210 LPIADFFLKLRGGYRAREV 228

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>CSD_CHLPN (Q9Z7L5) Probable cysteine desulfurase (EC 2.8.1.7)|
          Length = 406

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -3

Query: 349 PHLRRLPGALHPLQHLARLHVPRHRHLAHLGVHG--HARHTP 230
           PH+  + G + PLQ +A L    HR+ A+L V G   A H P
Sbjct: 168 PHVSNVTGCVQPLQQVAEL---VHRYDAYLAVDGAQGAPHLP 206

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>MTB1_BREEP (P10283) Modification methylase BepI (EC 2.1.1.37)|
           (Cytosine-specific methyltransferase BepI) (M.BepI)
          Length = 403

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +2

Query: 299 RKVLERVKSTGKAAEMWPYVPYTLATYP 382
           +K+L+ + S  + +E++PY PYT  T P
Sbjct: 228 KKILDELISLQEKSEVYPYPPYTHGTDP 255

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>TBX2_CANFA (Q863A2) T-box transcription factor TBX2 (T-box protein 2)|
          Length = 702

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +1

Query: 127 PQAQEEAATADGEHQGEDGLRGLREESQERRQIDSGCDE--RGREP 258
           P+  +E A + G+  G  GLR L +E  E R+ D G  E   G+EP
Sbjct: 391 PERGKEPAESGGD--GPFGLRSLEKERAEARRKDDGRKEAGEGKEP 434

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>OMB_DROME (Q24432) Optomotor-blind protein (Lethal(1)optomotor-blind)|
           (L(1)omb) (Protein bifid)
          Length = 972

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 23/70 (32%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
 Frame = -3

Query: 331 PGALHP-LQHLARLHVPRHRHLAHLGVHGHARHTPNRFDGVLDSPLAALAIHLHLDVHRL 155
           P   HP L     L  P H    H G H HA H  + +    D  LA+   H      R 
Sbjct: 258 PAGPHPGLYPGGGLRFPPH----HPGAHPHAHHLGSAYTTAEDVVLASAVAHQLHPAMRP 313

Query: 154 LWPLLPELEG 125
           L  L PE +G
Sbjct: 314 LRALQPEDDG 323

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>GP73_HUMAN (Q8NBJ4) Golgi phosphoprotein 2 (Golgi membrane protein GP73)|
          Length = 401

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 124 IPQAQEEAATADGEHQGEDGLRGLREESQERRQIDSGCDER 246
           IP  QEE   A GE + +  LRG  + + +  + +S  D++
Sbjct: 325 IPDGQEEEQEAAGEGRNQQKLRGEDDYNMDENEAESETDKQ 365

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>IF2_SALTY (Q9ZF31) Translation initiation factor IF-2|
          Length = 892

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +2

Query: 197 ERRVKNAVKSIRGVTSVAVNPKMSKVTVTGHVEPRK--VLERVKSTGKAA 340
           E  ++ AV S R  T  A  P+   VT+ GHV+  K  +L+ ++ST  A+
Sbjct: 372 ENELEEAVMSDRD-TGAAAEPRAPVVTIMGHVDHGKTSLLDYIRSTKVAS 420

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>IF2_SALTI (Q8Z3H7) Translation initiation factor IF-2|
          Length = 892

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +2

Query: 197 ERRVKNAVKSIRGVTSVAVNPKMSKVTVTGHVEPRK--VLERVKSTGKAA 340
           E  ++ AV S R  T  A  P+   VT+ GHV+  K  +L+ ++ST  A+
Sbjct: 372 ENELEEAVMSDRD-TGAAAEPRAPVVTIMGHVDHGKTSLLDYIRSTKVAS 420

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>IF2_SALPA (Q5PLB0) Translation initiation factor IF-2|
          Length = 892

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +2

Query: 197 ERRVKNAVKSIRGVTSVAVNPKMSKVTVTGHVEPRK--VLERVKSTGKAA 340
           E  ++ AV S R  T  A  P+   VT+ GHV+  K  +L+ ++ST  A+
Sbjct: 372 ENELEEAVMSDRD-TGAAAEPRAPVVTIMGHVDHGKTSLLDYIRSTKVAS 420

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>IF2_SALCH (Q57JH9) Translation initiation factor IF-2|
          Length = 892

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +2

Query: 197 ERRVKNAVKSIRGVTSVAVNPKMSKVTVTGHVEPRK--VLERVKSTGKAA 340
           E  ++ AV S R  T  A  P+   VT+ GHV+  K  +L+ ++ST  A+
Sbjct: 372 ENELEEAVMSDRD-TGAAAEPRAPVVTIMGHVDHGKTSLLDYIRSTKVAS 420

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>YEPC_SCHPO (O13942) Hypothetical protein C23H3.12c in chromosome I|
          Length = 226

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -3

Query: 184 IHLHLDVHRLLWPLLPELEGF-LCLRHAAQIREVIQGAHDLTQLQAIK 44
           I L L +  +L PL+P + GF LC R     R  IQG+  L ++ +I+
Sbjct: 127 IGLPLTIPFILIPLIPNIPGFYLCYRAYCNFR-AIQGSIQLARVMSIE 173

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>LVA_DROME (Q8MSS1) Protein lava lamp|
          Length = 2779

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +1

Query: 115  DKGIPQAQEEAATADGEHQGEDGLRGLREESQERRQIDSGCDER 246
            ++   QA ++AA+ D     E  L+  RE+ +++RQ D    ER
Sbjct: 1428 EQAASQANQQAASQDKVQILEQQLKEQREQEEQKRQQDQQLQER 1471

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>IF2_KLEOX (Q9ZF28) Translation initiation factor IF-2|
          Length = 896

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +2

Query: 197 ERRVKNAVKSIRGVTSVAVNPKMSKVTVTGHVEPRK--VLERVKSTGKAA 340
           E  ++ AV S R  T  A  P+   VT+ GHV+  K  +L+ ++ST  A+
Sbjct: 376 ENELEEAVMSDRD-TGAAAEPRAPVVTIMGHVDHGKTSLLDYIRSTKVAS 424

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>RNB_BUCBP (Q89AM0) Exoribonuclease 2 (EC 3.1.13.1) (Exoribonuclease II)|
           (Ribonuclease II) (RNase II)
          Length = 646

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 107 MTETKESLKLRKKRPQQTVNIKVKMDCEGC 196
           ++E K SLK+ K RP   +  K+++D +GC
Sbjct: 268 LSENKCSLKVNKSRP--VIACKIRIDSDGC 295

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>IF2_SHISS (Q3YX73) Translation initiation factor IF-2|
          Length = 890

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +2

Query: 197 ERRVKNAVKSIRGVTSVAVNPKMSKVTVTGHVEPRK--VLERVKSTGKAA 340
           E  ++ AV S R  T  A  P+   VT+ GHV+  K  +L+ ++ST  A+
Sbjct: 370 ENELEEAVMSDRD-TGAAAEPRAPVVTIMGHVDHGKTSLLDYIRSTKVAS 418

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>IF2_SHIDS (Q32BG5) Translation initiation factor IF-2|
          Length = 890

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +2

Query: 197 ERRVKNAVKSIRGVTSVAVNPKMSKVTVTGHVEPRK--VLERVKSTGKAA 340
           E  ++ AV S R  T  A  P+   VT+ GHV+  K  +L+ ++ST  A+
Sbjct: 370 ENELEEAVMSDRD-TGAAAEPRAPVVTIMGHVDHGKTSLLDYIRSTKVAS 418

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>IF2_ECOLI (P0A705) Translation initiation factor IF-2|
          Length = 890

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +2

Query: 197 ERRVKNAVKSIRGVTSVAVNPKMSKVTVTGHVEPRK--VLERVKSTGKAA 340
           E  ++ AV S R  T  A  P+   VT+ GHV+  K  +L+ ++ST  A+
Sbjct: 370 ENELEEAVMSDRD-TGAAAEPRAPVVTIMGHVDHGKTSLLDYIRSTKVAS 418

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>IF2_ECOL6 (P59587) Translation initiation factor IF-2|
          Length = 890

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +2

Query: 197 ERRVKNAVKSIRGVTSVAVNPKMSKVTVTGHVEPRK--VLERVKSTGKAA 340
           E  ++ AV S R  T  A  P+   VT+ GHV+  K  +L+ ++ST  A+
Sbjct: 370 ENELEEAVMSDRD-TGAAAEPRAPVVTIMGHVDHGKTSLLDYIRSTKVAS 418

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>IF2_ECO57 (P0A706) Translation initiation factor IF-2|
          Length = 890

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +2

Query: 197 ERRVKNAVKSIRGVTSVAVNPKMSKVTVTGHVEPRK--VLERVKSTGKAA 340
           E  ++ AV S R  T  A  P+   VT+ GHV+  K  +L+ ++ST  A+
Sbjct: 370 ENELEEAVMSDRD-TGAAAEPRAPVVTIMGHVDHGKTSLLDYIRSTKVAS 418

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>IF2_SHIFL (Q83JF9) Translation initiation factor IF-2|
          Length = 882

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +2

Query: 197 ERRVKNAVKSIRGVTSVAVNPKMSKVTVTGHVEPRK--VLERVKSTGKAA 340
           E  ++ AV S R  T  A  P+   VT+ GHV+  K  +L+ ++ST  A+
Sbjct: 362 ENELEEAVMSDRD-TGAAAEPRAPVVTIMGHVDHGKTSLLDYIRSTKVAS 410

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>IF2_SHIBS (Q31W47) Translation initiation factor IF-2|
          Length = 882

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +2

Query: 197 ERRVKNAVKSIRGVTSVAVNPKMSKVTVTGHVEPRK--VLERVKSTGKAA 340
           E  ++ AV S R  T  A  P+   VT+ GHV+  K  +L+ ++ST  A+
Sbjct: 362 ENELEEAVMSDRD-TGAAAEPRAPVVTIMGHVDHGKTSLLDYIRSTKVAS 410

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>YKD1_CAEEL (Q03560) Hypothetical protein B0464.2 in chromosome III|
          Length = 1150

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +1

Query: 109  DGDKGIPQAQEEAATADGEHQGEDGLRGLREESQERRQIDSGCDERGRE 255
            DGD+ +  + + A   DGE  GEDG      E +ERR+ D    +  R+
Sbjct: 948  DGDEFVNDSSD-AGNYDGEEGGEDG------ERRERRKKDKAAKKASRK 989

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>IF2_ENTCL (Q9ZF25) Translation initiation factor IF-2|
          Length = 897

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +2

Query: 197 ERRVKNAVKSIRGVTSVAVNPKMSKVTVTGHVEPRK--VLERVKSTGKAA 340
           E  ++ AV S R  T  A  P+   VT+ GHV+  K  +L+ ++ST  A+
Sbjct: 377 ENELEEAVMSDRD-TGAAAEPRAPVVTIMGHVDHGKTSLLDYIRSTKVAS 425

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>RL23_MYCGA (O52334) 50S ribosomal protein L23|
          Length = 108

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 206 VKNAVKSIRGVTSVAVNPKMSK 271
           +K A K+I GVT +AVN K+ K
Sbjct: 40  IKQAFKAIYGVTPIAVNTKIKK 61

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>YDCP_ECOLI (P76104) Putative protease ydcP precursor (EC 3.4.-.-)|
          Length = 653

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
 Frame = +2

Query: 113 ETKESLKLRKKRPQQTVN----IKVKMDCEGCERRVKNAVKS 226
           + K ++K  K  P Q VN    + +K DC  CE  V   +K+
Sbjct: 583 QAKGNIKSWKATPMQLVNGDEVLTLKFDCRPCEMHVIGKIKN 624

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>PRP1_MANSE (O44249) Phenoloxidase subunit 1 (EC 1.14.18.1) (proPO-P1)|
          Length = 684

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = -3

Query: 328 GALHPLQHL--ARLHVPRHRHLAHLGVHG 248
           G LH + H+  A  H P HRHL   GV G
Sbjct: 362 GDLHNMGHVFAAYTHDPDHRHLEQFGVMG 390

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>MAP1_STAAU (Q53599) Protein map precursor (MHC class II analog protein)|
          Length = 689

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 7/102 (6%)
 Frame = +2

Query: 89  LSDLCSMTETKESLKLRKKRPQQTVNIKVKMDCEGCERRVKNAVKSIRGV-------TSV 247
           LSDL    +++ S    KK+    V   +K D    ER +K A K+   V         +
Sbjct: 390 LSDLKFTGDSRVSYSDIKKK----VKSVLKHDRGIGERELKYAEKATYTVHFKNGTKKVI 445

Query: 248 AVNPKMSKVTVTGHVEPRKVLERVKSTGKAAEMWPYVPYTLA 373
            +N  +S++ +  +V+  K ++    TG  A+++ YVPYT+A
Sbjct: 446 NLNSNISQLNLL-YVKDIKNIDIDVKTGAKAKVYSYVPYTIA 486

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>Y1129_METJA (Q58529) Hypothetical protein MJ1129|
          Length = 95

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +2

Query: 203 RVKNAVKSIRGVTSVAVNPKMSKVTVTGHVEPRKVLERVK 322
           + K AVKS+ GV  V       +VTV GHV  + + E +K
Sbjct: 60  QAKEAVKSLEGVKKV-------EVTVEGHVMEKDINEMLK 92

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>HISX_BACLD (Q65EF9) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)|
          Length = 426

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 218 VKSIRGVTSVAVNPKMSKVTVTGHVEPRKVLERVKSTGKAA 340
           +KSI G TSV++   +   T       R ++E VK  G AA
Sbjct: 3   IKSISGNTSVSLKRSIDAGTEEQRKAVRGIIEEVKKNGNAA 43

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>ATOX1_MOUSE (O08997) Copper transport protein ATOX1 (Metal transport protein|
           ATX1)
          Length = 68

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = +2

Query: 173 VKMDCEGCERRVKNAVKSIRGVTSVAVNPKMSKVTVTGHVEPRKVLERVKSTGKA 337
           V M CEGC   V   +  + GV    ++    KV +        +L  +  TGKA
Sbjct: 8   VDMTCEGCAEAVSRVLNKLGGV-EFNIDLPNKKVCIDSEHSSDTLLATLNKTGKA 61

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>CCMA_PSEPK (Q88EX5) Cytochrome c biogenesis ATP-binding export protein ccmA|
           (EC 3.6.3.41) (Heme exporter protein A)
          Length = 210

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -3

Query: 121 LCLRHAAQIREVIQGAHDLTQLQAIKRCCTRXGVWRA 11
           L + HAA I++++    +LT L A+ +  +R  +W A
Sbjct: 80  LWIGHAAGIKDLLTAEENLTWLCALHQPASREAIWAA 116

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>R51A1_HUMAN (Q96B01) RAD51-associated protein 1 (RAD51-interacting protein)|
          Length = 352

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
 Frame = +2

Query: 92  SDLCSMTETKESLKLRKKRPQQ--TVNIKVKMDCEGCERRVKNAVKSIRGVTSVAVNPKM 265
           SD C   +  E   +RK + ++     +KVK   E  E++ K+   ++  VTSV   P  
Sbjct: 210 SDFCESEDNDEDFSMRKSKVKEIKKKEVKVKSPVEKKEKKSKSKCNAL--VTSVDSAP-- 265

Query: 266 SKVTVTGHVEPRKVLERVKSTGKAAEM 346
           + V       P+KV     +T K  E+
Sbjct: 266 AAVKSESQSLPKKVSLSSDTTRKPLEI 292


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,658,078
Number of Sequences: 219361
Number of extensions: 836571
Number of successful extensions: 3587
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 3437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3585
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 1380984984
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result