ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd21g09 |
|---|---|
| Clone Library Name | barley_pub |
>CDC65_HALSA (Q9HHR1) Cell division control protein 6 homolog 5 (CDC6 homolog 5)| Length = 428 Score = 30.0 bits (66), Expect = 1.5 Identities = 17/43 (39%), Positives = 23/43 (53%) Frame = -1 Query: 234 ARESRGRGGKQAEDYYGAEDVDGVAEQDLRPTNLMVVGFEDER 106 AR+SRGRGG D+ D + + + + T L VG E ER Sbjct: 372 ARKSRGRGGGMYMDFTFRGDPESMMHRVVDDTRLERVGTESER 414
>EMSY_MOUSE (Q8BMB0) Protein EMSY| Length = 1264 Score = 29.3 bits (64), Expect = 2.5 Identities = 18/41 (43%), Positives = 24/41 (58%) Frame = +3 Query: 36 HNIE*PL*PKIASPDVVLHRSRDRVRPRIRQPSNSSASSPV 158 HN P+ + AS D V D +PR R+ +NSS+SSPV Sbjct: 140 HNASLPVPAETASKDGVSCSDEDE-KPRKRRRTNSSSSSPV 179
>TCPG_SCHPO (O74341) T-complex protein 1 subunit gamma (TCP-1-gamma)| (CCT-gamma) Length = 528 Score = 29.3 bits (64), Expect = 2.5 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = -3 Query: 349 GGAXEHACSTKAASRARGAHVLRQWQSRASACAAQ 245 GGA E A S + A +AR + QW RA A A + Sbjct: 409 GGATEMAVSVRLAEKARSIEGVAQWPYRAVADAIE 443
>VL96_IRV1 (P22856) L96 protein| Length = 867 Score = 28.9 bits (63), Expect = 3.2 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = +3 Query: 72 SPDVVLHRSRDRVRPRIRQPSNSSASSPVRPRHQHLQL 185 SP V +R R R P S ++SPVRP+++ L Sbjct: 238 SPSPVRKSRSPSLRQRSRSPGRSRSNSPVRPKYRAADL 275
>RBP1_DROME (Q02427) RNA-binding protein 1| Length = 144 Score = 28.9 bits (63), Expect = 3.2 Identities = 18/48 (37%), Positives = 21/48 (43%) Frame = -1 Query: 144 PTNLMVVGFEDERDLEIDVARRPGLRSSAIKATRCCGAL*QAEEQGGQ 1 P V FED RD E D R A+ TRCCG + E G+ Sbjct: 46 PPGFAFVEFEDRRDAE-DATR-------ALDGTRCCGTRIRVEMSSGR 85
>TSC10_YARLI (Q6CE86) 3-ketodihydrosphingosine reductase TSC10 (EC 1.1.1.102)| (3-dehydrosphinganine reductase) (KDS reductase) Length = 372 Score = 28.9 bits (63), Expect = 3.2 Identities = 16/48 (33%), Positives = 23/48 (47%) Frame = -1 Query: 144 PTNLMVVGFEDERDLEIDVARRPGLRSSAIKATRCCGAL*QAEEQGGQ 1 P N GFE+E + ++ R+ S AI A C + E+GGQ Sbjct: 249 PGNFQSEGFEEENKSKPEITRQIEGPSQAISAEECAKIVFAQMEKGGQ 296
>TCPG_YEAST (P39077) T-complex protein 1 subunit gamma (TCP-1-gamma)| (CCT-gamma) Length = 534 Score = 28.1 bits (61), Expect = 5.5 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = -3 Query: 349 GGAXEHACSTKAASRARGAHVLRQWQSRASACAAQ 245 GGA E A S K A +A+ ++QW +A A A + Sbjct: 416 GGATEMAVSVKLAEKAKQLEGIQQWPYQAVADAME 450
>Y437_BUCAP (Q8K9B1) Hypothetical mscS family protein BUsg437| Length = 283 Score = 27.7 bits (60), Expect = 7.2 Identities = 11/24 (45%), Positives = 18/24 (75%) Frame = +1 Query: 127 NHQIRRPQVLFGHAINIFSSVVIL 198 N IR ++LFG+ IN+ S+++IL Sbjct: 15 NWLIRNQELLFGYVINLTSAIIIL 38
>MLL2_HUMAN (O14686) Myeloid/lymphoid or mixed-lineage leukemia protein 2| (ALL1-related protein) Length = 5262 Score = 27.7 bits (60), Expect = 7.2 Identities = 17/57 (29%), Positives = 23/57 (40%) Frame = +3 Query: 3 APLAPRPVKELHNIE*PL*PKIASPDVVLHRSRDRVRPRIRQPSNSSASSPVRPRHQ 173 +PL PRP+ P+ P+ SPD P R PS + P P H+ Sbjct: 2148 SPLTPRPLSAEAFCPSPVTPRFQSPD-----------PYSRPPSRPQSRDPFAPLHK 2193
>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1| (Plenty-of-prolines 101) Length = 946 Score = 27.3 bits (59), Expect = 9.4 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 6/60 (10%) Frame = +3 Query: 15 PRPVKELHNIE*PL*PKIASPDVVLHRSRDRVRPRIRQPS------NSSASSPVRPRHQH 176 P PV E PK SP+ + +++ RPR R S S + S RPR +H Sbjct: 250 PEPVPE---------PKEPSPEKNSKKEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRH 300
>MIA2_HUMAN (Q96PC5) Melanoma inhibitory activity protein 2 precursor| Length = 541 Score = 27.3 bits (59), Expect = 9.4 Identities = 17/45 (37%), Positives = 23/45 (51%) Frame = -1 Query: 231 RESRGRGGKQAEDYYGAEDVDGVAEQDLRPTNLMVVGFEDERDLE 97 +E G GG+QAE+ ++ V E R + V EDE DLE Sbjct: 223 KEWFGLGGEQAEEKAFESVIEPVQESSFRSRKIAV---EDENDLE 264
>NOP14_DEBHA (Q6BW57) Probable nucleolar complex protein 14| Length = 795 Score = 27.3 bits (59), Expect = 9.4 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 6/55 (10%) Frame = -2 Query: 317 GSKQSSGSTCVAAMAEPSFGL-CGAGARWHGKAG-----EEGENRQRITTELKML 171 GSKQ S +T + E S L + HGK G GEN + +T E KML Sbjct: 79 GSKQHSDATRAKSDVENSMKLQYELDKKQHGKTGGLVDRRFGENNRNLTAEEKML 133
>Y3058_BORPA (Q7W669) UPF0078 membrane protein BPP3058| Length = 215 Score = 27.3 bits (59), Expect = 9.4 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = -2 Query: 314 SKQSSGSTCVAAMAEPSFGLCGAGARWHGK 225 S+ SS + VAA P + + G+GA WH + Sbjct: 149 SRYSSLAALVAAFFAPVYYVFGSGAAWHAR 178
>Y3021_BORBR (Q7WI35) UPF0078 membrane protein BB3021| Length = 215 Score = 27.3 bits (59), Expect = 9.4 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = -2 Query: 314 SKQSSGSTCVAAMAEPSFGLCGAGARWHGK 225 S+ SS + VAA P + + G+GA WH + Sbjct: 149 SRYSSLAALVAAFFAPVYYVFGSGAAWHAR 178
>Y1718_BORPE (Q7VXN3) UPF0078 membrane protein BP1718| Length = 215 Score = 27.3 bits (59), Expect = 9.4 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = -2 Query: 314 SKQSSGSTCVAAMAEPSFGLCGAGARWHGK 225 S+ SS + VAA P + + G+GA WH + Sbjct: 149 SRYSSLAALVAAFFAPVYYVFGSGAAWHAR 178 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,876,938 Number of Sequences: 219361 Number of extensions: 733879 Number of successful extensions: 3195 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3055 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3190 length of database: 80,573,946 effective HSP length: 95 effective length of database: 59,734,651 effective search space used: 1433631624 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
