| Clone Name | basd21g09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC092544.4| Homo sapiens BAC clone RP11-317F4 from 4, complete sequence Length = 159263 Score = 46.1 bits (23), Expect = 0.078 Identities = 26/27 (96%) Strand = Plus / Minus Query: 196 ctctgcctgttttccccctcttccccg 222 |||||||| |||||||||||||||||| Sbjct: 85125 ctctgcctcttttccccctcttccccg 85099
>emb|AL672242.12| Mouse DNA sequence from clone RP23-83P17 on chromosome 17, complete sequence Length = 222709 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Plus Query: 199 tgcctgttttccccctcttccc 220 |||||||||||||||||||||| Sbjct: 37140 tgcctgttttccccctcttccc 37161
>emb|AL031054.1|HS48G12 Human DNA sequence from clone RP1-48G12 on chromosome Xq27.1-27.3 Contains a CpG island, complete sequence Length = 199016 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 194 tcctctgcctgttttccccct 214 ||||||||||||||||||||| Sbjct: 181985 tcctctgcctgttttccccct 181965
>gb|AF274305.1| Sus scrofa erythropoietin receptor mRNA, complete cds Length = 1843 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 259 ccgaagctcggctctgccatt 279 ||||||||||||||||||||| Sbjct: 851 ccgaagctcggctctgccatt 831
>ref|NM_214292.1| Sus scrofa erythropoietin receptor (EPOR), mRNA Length = 1843 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 259 ccgaagctcggctctgccatt 279 ||||||||||||||||||||| Sbjct: 851 ccgaagctcggctctgccatt 831
>gb|BC001566.1| Homo sapiens TSPY-like 2, mRNA (cDNA clone IMAGE:3451980), partial cds Length = 1633 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 gttttccccctcttccccgg 223 |||||||||||||||||||| Sbjct: 1011 gttttccccctcttccccgg 992
>emb|BX322635.6| Human DNA sequence from clone RP1-290F12 on chromosome X Contains the gene for super conserved receptor expressed in brain 3 (SREB3), the gene for cutaneous T-cell lymphoma-associated tumor antigen se20-4 (SE20-4) and two CpG islands, complete sequence Length = 66325 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 gttttccccctcttccccgg 223 |||||||||||||||||||| Sbjct: 62028 gttttccccctcttccccgg 62009
>emb|AL606706.3|OSJN00063 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0086G13, complete sequence Length = 127952 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 tttccccctcttccccggct 225 |||||||||||||||||||| Sbjct: 85692 tttccccctcttccccggct 85711
>gb|BC024270.1| Homo sapiens TSPY-like 2, mRNA (cDNA clone MGC:39136 IMAGE:2819684), complete cds Length = 2825 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 gttttccccctcttccccgg 223 |||||||||||||||||||| Sbjct: 2194 gttttccccctcttccccgg 2175
>emb|AL713652.1|HSM802979 Homo sapiens mRNA; cDNA DKFZp761J057 (from clone DKFZp761J057) Length = 2819 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 gttttccccctcttccccgg 223 |||||||||||||||||||| Sbjct: 2193 gttttccccctcttccccgg 2174
>ref|NM_022117.1| Homo sapiens TSPY-like 2 (TSPYL2), mRNA Length = 2830 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 gttttccccctcttccccgg 223 |||||||||||||||||||| Sbjct: 2204 gttttccccctcttccccgg 2185
>dbj|AB169870.1| Macaca fascicularis brain cDNA, clone: QflA-11354, similar to human cutaneous T-cell lymphoma-associated tumor antigense20-4 (SE20-4), mRNA, RefSeq: NM_022117.1 Length = 2840 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 gttttccccctcttccccgg 223 |||||||||||||||||||| Sbjct: 2213 gttttccccctcttccccgg 2194
>gb|AY040871.1| Homo sapiens cell division autoantigen 1 nucleolar protein mRNA, complete cds Length = 2867 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 gttttccccctcttccccgg 223 |||||||||||||||||||| Sbjct: 2203 gttttccccctcttccccgg 2184
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 tttccccctcttccccggct 225 |||||||||||||||||||| Sbjct: 21651150 tttccccctcttccccggct 21651169
>gb|AF254794.1|AF254794 Homo sapiens differentially expressed nucleolar TGF-beta1 target protein (DENTT) mRNA, complete cds Length = 2569 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 gttttccccctcttccccgg 223 |||||||||||||||||||| Sbjct: 1953 gttttccccctcttccccgg 1934
>dbj|AB056806.1| Macaca fascicularis brain cDNA clone:QflA-13812, similar to human TSPY-like2 (TSPYL2), mRNA, NM_022117.1 Length = 2839 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 gttttccccctcttccccgg 223 |||||||||||||||||||| Sbjct: 2213 gttttccccctcttccccgg 2194
>gb|AF273046.1|AF273046 Homo sapiens CTCL tumor antigen se20-4 mRNA, complete cds Length = 2830 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 gttttccccctcttccccgg 223 |||||||||||||||||||| Sbjct: 2204 gttttccccctcttccccgg 2185
>dbj|AK107452.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-128-C06, full insert sequence Length = 1640 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 206 tttccccctcttccccggct 225 |||||||||||||||||||| Sbjct: 343 tttccccctcttccccggct 324
>dbj|AP002886.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-1133J7, complete sequences Length = 168406 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 193 atcctctgcctgttttccccctct 216 |||||||||||||||||| ||||| Sbjct: 101561 atcctctgcctgttttcctcctct 101584
>dbj|AB209182.1| Homo sapiens mRNA for TSPY-like 2 variant protein Length = 4178 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 gttttccccctcttccccgg 223 |||||||||||||||||||| Sbjct: 3571 gttttccccctcttccccgg 3552
>dbj|AB063061.1| Macaca fascicularis brain cDNA clone:QmoA-12404, full insert sequence Length = 2266 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 gttttccccctcttccccgg 223 |||||||||||||||||||| Sbjct: 1619 gttttccccctcttccccgg 1600
>dbj|AB015345.1| Homo sapiens HRIHFB2216 mRNA, partial cds Length = 1605 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 gttttccccctcttccccgg 223 |||||||||||||||||||| Sbjct: 1454 gttttccccctcttccccgg 1435 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,960,685 Number of Sequences: 3902068 Number of extensions: 1960685 Number of successful extensions: 37091 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37052 Number of HSP's gapped (non-prelim): 39 length of query: 360 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 338 effective length of database: 17,147,199,772 effective search space: 5795753522936 effective search space used: 5795753522936 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)