ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd21g09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC092544.4| Homo sapiens BAC clone RP11-317F4 from 4, complet... 46 0.078
2emb|AL672242.12| Mouse DNA sequence from clone RP23-83P17 on chr... 44 0.31
3emb|AL031054.1|HS48G12 Human DNA sequence from clone RP1-48G12 o... 42 1.2
4gb|AF274305.1| Sus scrofa erythropoietin receptor mRNA, complete... 42 1.2
5ref|NM_214292.1| Sus scrofa erythropoietin receptor (EPOR), mRNA 42 1.2
6gb|BC001566.1| Homo sapiens TSPY-like 2, mRNA (cDNA clone IMAGE:... 40 4.8
7emb|BX322635.6| Human DNA sequence from clone RP1-290F12 on chro... 40 4.8
8emb|AL606706.3|OSJN00063 Oryza sativa genomic DNA, chromosome 4,... 40 4.8
9gb|BC024270.1| Homo sapiens TSPY-like 2, mRNA (cDNA clone MGC:39... 40 4.8
10emb|AL713652.1|HSM802979 Homo sapiens mRNA; cDNA DKFZp761J057 (f... 40 4.8
11ref|NM_022117.1| Homo sapiens TSPY-like 2 (TSPYL2), mRNA 40 4.8
12dbj|AB169870.1| Macaca fascicularis brain cDNA, clone: QflA-1135... 40 4.8
13gb|AY040871.1| Homo sapiens cell division autoantigen 1 nucleola... 40 4.8
14dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
15gb|AF254794.1|AF254794 Homo sapiens differentially expressed nuc... 40 4.8
16dbj|AB056806.1| Macaca fascicularis brain cDNA clone:QflA-13812,... 40 4.8
17gb|AF273046.1|AF273046 Homo sapiens CTCL tumor antigen se20-4 mR... 40 4.8
18dbj|AK107452.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.8
19dbj|AP002886.3| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 4.8
20dbj|AB209182.1| Homo sapiens mRNA for TSPY-like 2 variant protein 40 4.8
21dbj|AB063061.1| Macaca fascicularis brain cDNA clone:QmoA-12404,... 40 4.8
22dbj|AB015345.1| Homo sapiens HRIHFB2216 mRNA, partial cds 40 4.8

>gb|AC092544.4| Homo sapiens BAC clone RP11-317F4 from 4, complete sequence
          Length = 159263

 Score = 46.1 bits (23), Expect = 0.078
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 196   ctctgcctgttttccccctcttccccg 222
             |||||||| ||||||||||||||||||
Sbjct: 85125 ctctgcctcttttccccctcttccccg 85099



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>emb|AL672242.12| Mouse DNA sequence from clone RP23-83P17 on chromosome 17, complete
             sequence
          Length = 222709

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 199   tgcctgttttccccctcttccc 220
             ||||||||||||||||||||||
Sbjct: 37140 tgcctgttttccccctcttccc 37161



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>emb|AL031054.1|HS48G12 Human DNA sequence from clone RP1-48G12 on chromosome Xq27.1-27.3
              Contains a CpG island, complete sequence
          Length = 199016

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 194    tcctctgcctgttttccccct 214
              |||||||||||||||||||||
Sbjct: 181985 tcctctgcctgttttccccct 181965



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>gb|AF274305.1| Sus scrofa erythropoietin receptor mRNA, complete cds
          Length = 1843

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 259 ccgaagctcggctctgccatt 279
           |||||||||||||||||||||
Sbjct: 851 ccgaagctcggctctgccatt 831



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>ref|NM_214292.1| Sus scrofa erythropoietin receptor (EPOR), mRNA
          Length = 1843

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 259 ccgaagctcggctctgccatt 279
           |||||||||||||||||||||
Sbjct: 851 ccgaagctcggctctgccatt 831



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>gb|BC001566.1| Homo sapiens TSPY-like 2, mRNA (cDNA clone IMAGE:3451980), partial
            cds
          Length = 1633

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 204  gttttccccctcttccccgg 223
            ||||||||||||||||||||
Sbjct: 1011 gttttccccctcttccccgg 992



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>emb|BX322635.6| Human DNA sequence from clone RP1-290F12 on chromosome X Contains the
             gene for super conserved receptor expressed in brain 3
             (SREB3), the gene for cutaneous T-cell lymphoma-associated
             tumor antigen se20-4 (SE20-4) and two CpG islands,
             complete sequence
          Length = 66325

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 204   gttttccccctcttccccgg 223
             ||||||||||||||||||||
Sbjct: 62028 gttttccccctcttccccgg 62009



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>emb|AL606706.3|OSJN00063 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0086G13,
             complete sequence
          Length = 127952

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 206   tttccccctcttccccggct 225
             ||||||||||||||||||||
Sbjct: 85692 tttccccctcttccccggct 85711



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>gb|BC024270.1| Homo sapiens TSPY-like 2, mRNA (cDNA clone MGC:39136 IMAGE:2819684),
            complete cds
          Length = 2825

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 204  gttttccccctcttccccgg 223
            ||||||||||||||||||||
Sbjct: 2194 gttttccccctcttccccgg 2175



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>emb|AL713652.1|HSM802979 Homo sapiens mRNA; cDNA DKFZp761J057 (from clone DKFZp761J057)
          Length = 2819

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 204  gttttccccctcttccccgg 223
            ||||||||||||||||||||
Sbjct: 2193 gttttccccctcttccccgg 2174



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>ref|NM_022117.1| Homo sapiens TSPY-like 2 (TSPYL2), mRNA
          Length = 2830

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 204  gttttccccctcttccccgg 223
            ||||||||||||||||||||
Sbjct: 2204 gttttccccctcttccccgg 2185



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>dbj|AB169870.1| Macaca fascicularis brain cDNA, clone: QflA-11354, similar to human
            cutaneous T-cell lymphoma-associated tumor antigense20-4
            (SE20-4), mRNA, RefSeq: NM_022117.1
          Length = 2840

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 204  gttttccccctcttccccgg 223
            ||||||||||||||||||||
Sbjct: 2213 gttttccccctcttccccgg 2194



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>gb|AY040871.1| Homo sapiens cell division autoantigen 1 nucleolar protein mRNA,
            complete cds
          Length = 2867

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 204  gttttccccctcttccccgg 223
            ||||||||||||||||||||
Sbjct: 2203 gttttccccctcttccccgg 2184



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 206      tttccccctcttccccggct 225
                ||||||||||||||||||||
Sbjct: 21651150 tttccccctcttccccggct 21651169



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>gb|AF254794.1|AF254794 Homo sapiens differentially expressed nucleolar TGF-beta1 target
            protein (DENTT) mRNA, complete cds
          Length = 2569

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 204  gttttccccctcttccccgg 223
            ||||||||||||||||||||
Sbjct: 1953 gttttccccctcttccccgg 1934



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>dbj|AB056806.1| Macaca fascicularis brain cDNA clone:QflA-13812, similar to human
            TSPY-like2 (TSPYL2), mRNA, NM_022117.1
          Length = 2839

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 204  gttttccccctcttccccgg 223
            ||||||||||||||||||||
Sbjct: 2213 gttttccccctcttccccgg 2194



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>gb|AF273046.1|AF273046 Homo sapiens CTCL tumor antigen se20-4 mRNA, complete cds
          Length = 2830

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 204  gttttccccctcttccccgg 223
            ||||||||||||||||||||
Sbjct: 2204 gttttccccctcttccccgg 2185



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>dbj|AK107452.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-128-C06, full
           insert sequence
          Length = 1640

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 206 tttccccctcttccccggct 225
           ||||||||||||||||||||
Sbjct: 343 tttccccctcttccccggct 324



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>dbj|AP002886.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-1133J7, complete
              sequences
          Length = 168406

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 193    atcctctgcctgttttccccctct 216
              |||||||||||||||||| |||||
Sbjct: 101561 atcctctgcctgttttcctcctct 101584



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>dbj|AB209182.1| Homo sapiens mRNA for TSPY-like 2 variant protein
          Length = 4178

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 204  gttttccccctcttccccgg 223
            ||||||||||||||||||||
Sbjct: 3571 gttttccccctcttccccgg 3552



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>dbj|AB063061.1| Macaca fascicularis brain cDNA clone:QmoA-12404, full insert sequence
          Length = 2266

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 204  gttttccccctcttccccgg 223
            ||||||||||||||||||||
Sbjct: 1619 gttttccccctcttccccgg 1600



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>dbj|AB015345.1| Homo sapiens HRIHFB2216 mRNA, partial cds
          Length = 1605

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 204  gttttccccctcttccccgg 223
            ||||||||||||||||||||
Sbjct: 1454 gttttccccctcttccccgg 1435


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,960,685
Number of Sequences: 3902068
Number of extensions: 1960685
Number of successful extensions: 37091
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37052
Number of HSP's gapped (non-prelim): 39
length of query: 360
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 338
effective length of database: 17,147,199,772
effective search space: 5795753522936
effective search space used: 5795753522936
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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