| Clone Name | basd21g04 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT017828.1| Zea mays clone EL01N0508G02.c mRNA sequence Length = 731 Score = 307 bits (155), Expect = 3e-80 Identities = 281/323 (86%) Strand = Plus / Plus Query: 122 ggagatgaatgcccctgaccgctatgagcgctttgttgtgcctgagggcacaaagaaggt 181 ||||||||||||||||||||| |||||||| || || ||||| |||||||| ||||| || Sbjct: 194 ggagatgaatgcccctgaccgttatgagcgtttcgtcgtgccagagggcaccaagaaagt 253 Query: 182 gtcttttgagaaggatacaaagatcatgaatgctgcatctttcactattgaacgtgagga 241 ||| | ||||| |||||||||||| ||||||||||||| |||||| | ||||| ||||| Sbjct: 254 gtcctatgagagggatacaaagattgtgaatgctgcatcattcactgtcgaacgcgagga 313 Query: 242 tcacaccatcggcaacatcctccgcatgcagctgcacagggacccaaatgttcatttcgc 301 |||||| | ||||| ||||||||||||||| ||||||| ||||||||||||| || || Sbjct: 314 tcacactgtaggcaatatcctccgcatgcagttgcacagagacccaaatgttctctttgc 373 Query: 302 tggctataagctccctcacccccttcagtacaagatcattgttaggatccatactgcaag 361 || ||||||||||||||||| || |||||||||||||||||||||||||| || | || Sbjct: 374 cgggtataagctccctcacccactccagtacaagatcattgttaggatccacacaacgag 433 Query: 362 ccaatcctccccaacacaggcatatacccaggcaatcaatgatctagacaaggagcttga 421 ||| |||||||| || ||||| || |||||||| ||||||||||||||||| |||||||| Sbjct: 434 ccagtcctccccgacgcaggcctacacccaggctatcaatgatctagacaaagagcttga 493 Query: 422 gaacctgaagcaagcttttgagg 444 | |||| |||||||||||||||| Sbjct: 494 gtaccttaagcaagcttttgagg 516
>dbj|AK099622.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013053F13, full insert sequence Length = 787 Score = 289 bits (146), Expect = 6e-75 Identities = 278/322 (86%) Strand = Plus / Plus Query: 123 gagatgaatgcccctgaccgctatgagcgctttgttgtgcctgagggcacaaagaaggtg 182 ||||||||||| || |||||||| || |||||||| ||||||||||| || |||||||| Sbjct: 175 gagatgaatgctcccgaccgctacgaacgctttgtggtgcctgagggaaccaagaaggta 234 Query: 183 tcttttgagaaggatacaaagatcatgaatgctgcatctttcactattgaacgtgaggat 242 || | |||| |||||||||||| ||||||||| || ||||| ||||| |||||||| Sbjct: 235 tcatatgagcgggatacaaagattgtgaatgctgggtcattcacaattgagcgtgaggac 294 Query: 243 cacaccatcggcaacatcctccgcatgcagctgcacagggacccaaatgttcatttcgct 302 |||||||| ||||||||||||||||||||||| |||||||||||||| || | || ||| Sbjct: 295 cacaccattggcaacatcctccgcatgcagctccacagggacccaaacgtcctctttgct 354 Query: 303 ggctataagctccctcacccccttcagtacaagatcattgttaggatccatactgcaagc 362 || |||||||||||||| |||||||||||||||||| |||| ||| |||||||||||| | Sbjct: 355 ggttataagctccctcatccccttcagtacaagatccttgtcagggtccatactgcaaac 414 Query: 363 caatcctccccaacacaggcatatacccaggcaatcaatgatctagacaaggagcttgag 422 || ||| |||| || || || || || ||||||||||||||| ||||||||||||||||| Sbjct: 415 cagtccacccctactcaagcgtacacacaggcaatcaatgatttagacaaggagcttgag 474 Query: 423 aacctgaagcaagcttttgagg 444 || || |||||||||||||||| Sbjct: 475 aatctcaagcaagcttttgagg 496 Score = 44.1 bits (22), Expect = 0.62 Identities = 43/50 (86%) Strand = Plus / Plus Query: 541 gatgagaagacccgattcgaggaaaggatgaagcagggctactaggccaa 590 |||||||||| ||| | |||||||||| |||||||| ||||||||||| Sbjct: 496 gatgagaagatccgctacgaggaaaggcctaagcagggatactaggccaa 545
>ref|XM_476775.1| Oryza sativa (japonica cultivar-group), mRNA Length = 363 Score = 283 bits (143), Expect = 4e-73 Identities = 275/319 (86%) Strand = Plus / Plus Query: 126 atgaatgcccctgaccgctatgagcgctttgttgtgcctgagggcacaaagaaggtgtct 185 |||||||| || |||||||| || |||||||| ||||||||||| || |||||||| || Sbjct: 1 atgaatgctcccgaccgctacgaacgctttgtggtgcctgagggaaccaagaaggtatca 60 Query: 186 tttgagaaggatacaaagatcatgaatgctgcatctttcactattgaacgtgaggatcac 245 | |||| |||||||||||| ||||||||| || ||||| ||||| |||||||| ||| Sbjct: 61 tatgagcgggatacaaagattgtgaatgctgggtcattcacaattgagcgtgaggaccac 120 Query: 246 accatcggcaacatcctccgcatgcagctgcacagggacccaaatgttcatttcgctggc 305 ||||| ||||||||||||||||||||||| |||||||||||||| || | || ||||| Sbjct: 121 accattggcaacatcctccgcatgcagctccacagggacccaaacgtcctctttgctggt 180 Query: 306 tataagctccctcacccccttcagtacaagatcattgttaggatccatactgcaagccaa 365 |||||||||||||| |||||||||||||||||| |||| ||| |||||||||||| ||| Sbjct: 181 tataagctccctcatccccttcagtacaagatccttgtcagggtccatactgcaaaccag 240 Query: 366 tcctccccaacacaggcatatacccaggcaatcaatgatctagacaaggagcttgagaac 425 ||| |||| || || || || || ||||||||||||||| ||||||||||||||||||| Sbjct: 241 tccacccctactcaagcgtacacacaggcaatcaatgatttagacaaggagcttgagaat 300 Query: 426 ctgaagcaagcttttgagg 444 || |||||||||||||||| Sbjct: 301 ctcaagcaagcttttgagg 319
>dbj|AK068132.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013131J17, full insert sequence Length = 812 Score = 281 bits (142), Expect = 2e-72 Identities = 277/322 (86%) Strand = Plus / Plus Query: 123 gagatgaatgcccctgaccgctatgagcgctttgttgtgcctgagggcacaaagaaggtg 182 ||||||||||| || |||||||| || |||||||| ||||||| ||| || |||||||| Sbjct: 177 gagatgaatgctcccgaccgctacgaacgctttgtggtgcctgggggaaccaagaaggta 236 Query: 183 tcttttgagaaggatacaaagatcatgaatgctgcatctttcactattgaacgtgaggat 242 || | |||| |||||||||||| ||||||||| || ||||| ||||| |||||||| Sbjct: 237 tcatatgagcgggatacaaagattgtgaatgctgggtcattcacaattgagcgtgaggac 296 Query: 243 cacaccatcggcaacatcctccgcatgcagctgcacagggacccaaatgttcatttcgct 302 |||||||| ||||||||||||||||||||||| |||||||||||||| || | || ||| Sbjct: 297 cacaccattggcaacatcctccgcatgcagctccacagggacccaaacgtcctctttgct 356 Query: 303 ggctataagctccctcacccccttcagtacaagatcattgttaggatccatactgcaagc 362 || |||||||||||||| |||||||||||||||||| |||| ||| |||||||||||| | Sbjct: 357 ggttataagctccctcatccccttcagtacaagatccttgtcagggtccatactgcaaac 416 Query: 363 caatcctccccaacacaggcatatacccaggcaatcaatgatctagacaaggagcttgag 422 || ||| |||| || || || || || ||||||||||||||| ||||||||||||||||| Sbjct: 417 cagtccacccctactcaagcgtacacacaggcaatcaatgatttagacaaggagcttgag 476 Query: 423 aacctgaagcaagcttttgagg 444 || || |||||||||||||||| Sbjct: 477 aatctcaagcaagcttttgagg 498 Score = 44.1 bits (22), Expect = 0.62 Identities = 43/50 (86%) Strand = Plus / Plus Query: 541 gatgagaagacccgattcgaggaaaggatgaagcagggctactaggccaa 590 |||||||||| ||| | |||||||||| |||||||| ||||||||||| Sbjct: 498 gatgagaagatccgctacgaggaaaggcctaagcagggatactaggccaa 547
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 101 bits (51), Expect = 3e-18 Identities = 87/99 (87%) Strand = Plus / Minus Query: 349 tccatactgcaagccaatcctccccaacacaggcatatacccaggcaatcaatgatctag 408 |||||||||||| ||| ||| |||| || || || || || ||||||||||||||| ||| Sbjct: 3846898 tccatactgcaaaccagtccacccctactcaagcgtacacacaggcaatcaatgatttag 3846839 Query: 409 acaaggagcttgagaacctgaagcaagcttttgaggtct 447 |||||||||||||||| || ||||||||||||||||||| Sbjct: 3846838 acaaggagcttgagaatctcaagcaagcttttgaggtct 3846800 Score = 79.8 bits (40), Expect = 1e-11 Identities = 67/76 (88%) Strand = Plus / Minus Query: 194 ggatacaaagatcatgaatgctgcatctttcactattgaacgtgaggatcacaccatcgg 253 |||||||||||| ||||||||| || ||||| ||||| |||||||| |||||||| || Sbjct: 3847218 ggatacaaagattgtgaatgctgggtcattcacaattgagcgtgaggaccacaccattgg 3847159 Query: 254 caacatcctccgcatg 269 |||||||||||||||| Sbjct: 3847158 caacatcctccgcatg 3847143 Score = 77.8 bits (39), Expect = 4e-11 Identities = 66/75 (88%) Strand = Plus / Minus Query: 269 gcagctgcacagggacccaaatgttcatttcgctggctataagctccctcacccccttca 328 |||||| |||||||||||||| || | || ||||| |||||||||||||| |||||||| Sbjct: 3847058 gcagctccacagggacccaaacgtcctctttgctggttataagctccctcatccccttca 3846999 Query: 329 gtacaagatcattgt 343 |||||||||| |||| Sbjct: 3846998 gtacaagatccttgt 3846984 Score = 58.0 bits (29), Expect = 4e-05 Identities = 50/57 (87%) Strand = Plus / Minus Query: 123 gagatgaatgcccctgaccgctatgagcgctttgttgtgcctgagggcacaaagaag 179 ||||||||||| || |||||||| || |||||||| ||||||||||| || |||||| Sbjct: 3849093 gagatgaatgctcccgaccgctacgaacgctttgtggtgcctgagggaaccaagaag 3849037 Score = 44.1 bits (22), Expect = 0.62 Identities = 43/50 (86%) Strand = Plus / Minus Query: 541 gatgagaagacccgattcgaggaaaggatgaagcagggctactaggccaa 590 |||||||||| ||| | |||||||||| |||||||| ||||||||||| Sbjct: 3846449 gatgagaagatccgctacgaggaaaggcctaagcagggatactaggccaa 3846400
>dbj|AP004670.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0496D04 Length = 197358 Score = 101 bits (51), Expect = 3e-18 Identities = 87/99 (87%) Strand = Plus / Minus Query: 349 tccatactgcaagccaatcctccccaacacaggcatatacccaggcaatcaatgatctag 408 |||||||||||| ||| ||| |||| || || || || || ||||||||||||||| ||| Sbjct: 86010 tccatactgcaaaccagtccacccctactcaagcgtacacacaggcaatcaatgatttag 85951 Query: 409 acaaggagcttgagaacctgaagcaagcttttgaggtct 447 |||||||||||||||| || ||||||||||||||||||| Sbjct: 85950 acaaggagcttgagaatctcaagcaagcttttgaggtct 85912 Score = 79.8 bits (40), Expect = 1e-11 Identities = 67/76 (88%) Strand = Plus / Minus Query: 194 ggatacaaagatcatgaatgctgcatctttcactattgaacgtgaggatcacaccatcgg 253 |||||||||||| ||||||||| || ||||| ||||| |||||||| |||||||| || Sbjct: 86330 ggatacaaagattgtgaatgctgggtcattcacaattgagcgtgaggaccacaccattgg 86271 Query: 254 caacatcctccgcatg 269 |||||||||||||||| Sbjct: 86270 caacatcctccgcatg 86255 Score = 77.8 bits (39), Expect = 4e-11 Identities = 66/75 (88%) Strand = Plus / Minus Query: 269 gcagctgcacagggacccaaatgttcatttcgctggctataagctccctcacccccttca 328 |||||| |||||||||||||| || | || ||||| |||||||||||||| |||||||| Sbjct: 86170 gcagctccacagggacccaaacgtcctctttgctggttataagctccctcatccccttca 86111 Query: 329 gtacaagatcattgt 343 |||||||||| |||| Sbjct: 86110 gtacaagatccttgt 86096 Score = 58.0 bits (29), Expect = 4e-05 Identities = 50/57 (87%) Strand = Plus / Minus Query: 123 gagatgaatgcccctgaccgctatgagcgctttgttgtgcctgagggcacaaagaag 179 ||||||||||| || |||||||| || |||||||| ||||||||||| || |||||| Sbjct: 88205 gagatgaatgctcccgaccgctacgaacgctttgtggtgcctgagggaaccaagaag 88149 Score = 44.1 bits (22), Expect = 0.62 Identities = 43/50 (86%) Strand = Plus / Minus Query: 541 gatgagaagacccgattcgaggaaaggatgaagcagggctactaggccaa 590 |||||||||| ||| | |||||||||| |||||||| ||||||||||| Sbjct: 85561 gatgagaagatccgctacgaggaaaggcctaagcagggatactaggccaa 85512
>dbj|AP006144.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT23P21, TM0261, complete sequence Length = 121882 Score = 65.9 bits (33), Expect = 2e-07 Identities = 57/65 (87%) Strand = Plus / Plus Query: 201 aagatcatgaatgctgcatctttcactattgaacgtgaggatcacaccatcggcaacatc 260 |||||||| ||||| ||||| ||||| || || || ||||||||||||||||| |||||| Sbjct: 40364 aagatcatcaatgcggcatcgttcaccatagagcgagaggatcacaccatcggaaacatc 40423 Query: 261 ctccg 265 ||||| Sbjct: 40424 ctccg 40428
>gb|AE017261.1| Picrophilus torridus DSM 9790, complete genome Length = 1545895 Score = 46.1 bits (23), Expect = 0.16 Identities = 29/31 (93%) Strand = Plus / Plus Query: 397 tcaatgatctagacaaggagcttgagaacct 427 ||||||||||| ||||||||||| ||||||| Sbjct: 723746 tcaatgatctatacaaggagcttaagaacct 723776
>gb|AE016814.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome I, complete sequence Length = 691920 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Minus Query: 37 cgtcttcttcgtcttcctcggag 59 ||||||||||||||||||||||| Sbjct: 675235 cgtcttcttcgtcttcctcggag 675213
>ref|NM_208080.1| Eremothecium gossypii AAR184Wp (AAR184W), mRNA Length = 2511 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Minus Query: 37 cgtcttcttcgtcttcctcggag 59 ||||||||||||||||||||||| Sbjct: 589 cgtcttcttcgtcttcctcggag 567
>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29 Length = 309050 Score = 44.1 bits (22), Expect = 0.62 Identities = 25/26 (96%) Strand = Plus / Minus Query: 32 gccgccgtcttcttcgtcttcctcgg 57 ||||||||||||||||||||| |||| Sbjct: 60512 gccgccgtcttcttcgtcttcttcgg 60487
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 44.1 bits (22), Expect = 0.62 Identities = 22/22 (100%) Strand = Plus / Minus Query: 31 ggccgccgtcttcttcgtcttc 52 |||||||||||||||||||||| Sbjct: 2137311 ggccgccgtcttcttcgtcttc 2137290
>gb|AC114917.2| Mus musculus chromosome 8 clone RP23-84K6, complete sequence Length = 181442 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 163 ctgagggcacaaagaaggtgt 183 ||||||||||||||||||||| Sbjct: 170512 ctgagggcacaaagaaggtgt 170532
>gb|AC084821.26| Mus musculus strain C57BL/6J clone rp23-395h6 map 1, complete sequence Length = 211776 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 306 tataagctccctcaccccctt 326 ||||||||||||||||||||| Sbjct: 91252 tataagctccctcaccccctt 91272
>ref|XM_776377.1| PREDICTED: Strongylocentrotus purpuratus similar to anaphase-promoting complex subunit 7 (LOC576029), mRNA Length = 738 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 337 tcattgttaggatccatactg 357 ||||||||||||||||||||| Sbjct: 503 tcattgttaggatccatactg 483
>emb|BX649627.10| Zebrafish DNA sequence from clone DKEY-78B7 in linkage group 3, complete sequence Length = 92147 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 560 aggaaaggatgaagcagggct 580 ||||||||||||||||||||| Sbjct: 12923 aggaaaggatgaagcagggct 12943
>emb|BX511176.6| Zebrafish DNA sequence from clone CH211-8C17 in linkage group 3, complete sequence Length = 116813 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 560 aggaaaggatgaagcagggct 580 ||||||||||||||||||||| Sbjct: 35130 aggaaaggatgaagcagggct 35150
>dbj|AB223866.1| Aspergillus oryzae cDNA, contig sequence: AoEST0707 Length = 1154 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 124 agatgaatgcccctgaccgctatga 148 ||||||||||||||||||| ||||| Sbjct: 390 agatgaatgcccctgaccgttatga 414
>gb|AF477990.1| Mus musculus CDT1 protein gene, complete cds Length = 7485 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 163 ctgagggcacaaagaaggtgt 183 ||||||||||||||||||||| Sbjct: 5689 ctgagggcacaaagaaggtgt 5709
>ref|XM_686968.1| PREDICTED: Danio rerio hypothetical protein LOC563607 (LOC563607), mRNA Length = 1800 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 560 aggaaaggatgaagcagggct 580 ||||||||||||||||||||| Sbjct: 230 aggaaaggatgaagcagggct 250
>gb|AC151999.5| Mus musculus BAC clone RP23-98D11 from chromosome 8, complete sequence Length = 229414 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 163 ctgagggcacaaagaaggtgt 183 ||||||||||||||||||||| Sbjct: 99695 ctgagggcacaaagaaggtgt 99715
>emb|AL627392.12| Mouse DNA sequence from clone RP23-185I12 on chromosome 4, complete sequence Length = 182520 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 200 aaagatcatgaatgctgcatctttc 224 |||||||||||||||||||| |||| Sbjct: 115137 aaagatcatgaatgctgcatttttc 115113
>ref|NM_115068.2| Arabidopsis thaliana ATRPB13.6; DNA binding / DNA-directed RNA polymerase AT3G52090 (ATRPB13.6) mRNA, complete cds Length = 620 Score = 40.1 bits (20), Expect = 9.6 Identities = 83/104 (79%) Strand = Plus / Plus Query: 315 cctcacccccttcagtacaagatcattgttaggatccatactgcaagccaatcctcccca 374 ||||| || ||| ||||||| ||||| || ||||| || || ||||||| || |||||| Sbjct: 244 cctcatcctcttaagtacaaaatcatagtgaggattcacacaacaagccagtcttcccca 303 Query: 375 acacaggcatatacccaggcaatcaatgatctagacaaggagct 418 | || ||||| | |||||| |||||||| | ||||||||||| Sbjct: 304 atgcaagcatacaaccaggccatcaatgacttggacaaggagct 347
>ref|NM_103003.2| Arabidopsis thaliana unknown protein AT1G32690 mRNA, complete cds Length = 803 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 cgtcttcttcgtcttcctcg 56 |||||||||||||||||||| Sbjct: 205 cgtcttcttcgtcttcctcg 224
>ref|NM_195220.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0086I08.15), mRNA Length = 813 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 ccgccgtcttcttcgtcttc 52 |||||||||||||||||||| Sbjct: 189 ccgccgtcttcttcgtcttc 208
>gb|AC099628.7| Mus musculus chromosome 1, clone RP24-82L18, complete sequence Length = 171875 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 438 tttgaggtctgtttcttgtgcata 461 |||||||||||| ||||||||||| Sbjct: 161338 tttgaggtctgtgtcttgtgcata 161315
>gb|BT012089.1| Arabidopsis thaliana At1g32690 mRNA sequence Length = 515 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 cgtcttcttcgtcttcctcg 56 |||||||||||||||||||| Sbjct: 88 cgtcttcttcgtcttcctcg 107
>gb|AC159238.2| Mus musculus BAC clone RP24-477O8 from chromosome 12, complete sequence Length = 176407 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 155 tgttgtgcctgagggcacaaagaa 178 ||||||| |||||||||||||||| Sbjct: 126800 tgttgtgactgagggcacaaagaa 126777
>gb|AY523335.1| Drosophila simulans strain CS8 genomic sequence Length = 740 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 35 gccgtcttcttcgtcttcctcgga 58 ||||||||||||| |||||||||| Sbjct: 59 gccgtcttcttcgacttcctcgga 36
>gb|AY523333.1| Drosophila simulans strain CS6 genomic sequence Length = 740 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 35 gccgtcttcttcgtcttcctcgga 58 ||||||||||||| |||||||||| Sbjct: 59 gccgtcttcttcgacttcctcgga 36
>gb|AC101830.7| Mus musculus chromosome 1, clone RP24-480B20, complete sequence Length = 158825 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 438 tttgaggtctgtttcttgtgcata 461 |||||||||||| ||||||||||| Sbjct: 52034 tttgaggtctgtgtcttgtgcata 52011
>gb|BT011313.1| Arabidopsis thaliana At1g32690 gene, complete cds Length = 603 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 cgtcttcttcgtcttcctcg 56 |||||||||||||||||||| Sbjct: 176 cgtcttcttcgtcttcctcg 195
>gb|BT010837.1| Arabidopsis thaliana At1g32690 mRNA, complete cds Length = 799 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 cgtcttcttcgtcttcctcg 56 |||||||||||||||||||| Sbjct: 201 cgtcttcttcgtcttcctcg 220
>ref|XM_502866.1| Yarrowia lipolytica CLIB122, YALI0D15554g predicted mRNA Length = 1962 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 36 ccgtcttcttcgtcttcctcggag 59 ||||||||||||||||| |||||| Sbjct: 812 ccgtcttcttcgtcttcttcggag 789
>ref|XM_504810.1| Yarrowia lipolytica CLIB122, YALI0F00242g predicted mRNA Length = 633 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 cgtcttcttcgtcttcctcg 56 |||||||||||||||||||| Sbjct: 106 cgtcttcttcgtcttcctcg 87
>emb|AL365204.11| Human DNA sequence from clone RP11-321L2 on chromosome 9 Contains the 3' end of a novel gene, a novel gene and a CpG island, complete sequence Length = 129191 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 437 ttttgaggtctgtttcttgt 456 |||||||||||||||||||| Sbjct: 48422 ttttgaggtctgtttcttgt 48441
>gb|AC123519.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0017B18, complete sequence Length = 150279 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 cgtcttcttcgtcttcctcg 56 |||||||||||||||||||| Sbjct: 38470 cgtcttcttcgtcttcctcg 38451
>gb|AC157990.4| Mus musculus chromosome 5, clone RP24-307I24, complete sequence Length = 153860 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 163 ctgagggcacaaagaaggtgtctt 186 ||||||||||||||||| |||||| Sbjct: 85335 ctgagggcacaaagaagctgtctt 85312
>emb|AL132821.17|HSDJ999L4 Human DNA sequence from clone RP5-999L4 on chromosome 20 Contains the RPL12L3 gene for ribosomal protein L12-like 3 pseudogene and the 5' end of the RIN2 gene for Ras and Rab interactor 2, complete sequence Length = 100080 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 agctccctcacccccttcag 329 |||||||||||||||||||| Sbjct: 40974 agctccctcacccccttcag 40993
>emb|BX569694.1| Synechococcus sp. WH8102 complete genome; segment 6/7 Length = 349122 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 81 cctcgaggaatttcagaggaagga 104 ||||||||||||||||||| |||| Sbjct: 151521 cctcgaggaatttcagaggcagga 151498
>emb|BX927184.5| Zebrafish DNA sequence from clone DKEY-125I20 in linkage group 5, complete sequence Length = 160345 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 658 gaaaaaatagtcagggattg 677 |||||||||||||||||||| Sbjct: 28659 gaaaaaatagtcagggattg 28678
>gb|AC105746.10| Oryza sativa chromosome 10 BAC OSJNBb0086I08 genomic sequence, complete sequence Length = 126842 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 ccgccgtcttcttcgtcttc 52 |||||||||||||||||||| Sbjct: 109303 ccgccgtcttcttcgtcttc 109284
>gb|AC117399.2| Homo sapiens 3 BAC RP11-179B14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 94000 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 437 ttttgaggtctgtttcttgt 456 |||||||||||||||||||| Sbjct: 57653 ttttgaggtctgtttcttgt 57672
>gb|AC092110.9| Homo sapiens 12 BAC RP11-287J11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 181207 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 aaggatacaaagatcatgaa 211 |||||||||||||||||||| Sbjct: 23155 aaggatacaaagatcatgaa 23174
>gb|AC022532.13| Homo sapiens chromosome 10 clone RP11-104F15, complete sequence Length = 208823 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 ccctcacccccttcagtaca 333 |||||||||||||||||||| Sbjct: 19736 ccctcacccccttcagtaca 19755
>gb|AC099505.2| Homo sapiens chromosome 5 clone RP11-220O3, complete sequence Length = 49773 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 653 gtagagaaaaaatagtcagg 672 |||||||||||||||||||| Sbjct: 13777 gtagagaaaaaatagtcagg 13796
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 cgtcttcttcgtcttcctcg 56 |||||||||||||||||||| Sbjct: 1142664 cgtcttcttcgtcttcctcg 1142645
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 ccgccgtcttcttcgtcttc 52 |||||||||||||||||||| Sbjct: 5558219 ccgccgtcttcttcgtcttc 5558238
>emb|BX825290.1|CNS0A6H0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL27ZA08 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 589 Score = 40.1 bits (20), Expect = 9.6 Identities = 83/104 (79%) Strand = Plus / Plus Query: 315 cctcacccccttcagtacaagatcattgttaggatccatactgcaagccaatcctcccca 374 ||||| || ||| ||||||| ||||| || ||||| || || ||||||| || |||||| Sbjct: 223 cctcatcctcttaagtacaaaatcatagtgaggattcacacaacaagccagtcttcccca 282 Query: 375 acacaggcatatacccaggcaatcaatgatctagacaaggagct 418 | || ||||| | |||||| |||||||| | ||||||||||| Sbjct: 283 atgcaagcatacaaccaggccatcaatgacttggacaaggagct 326
>gb|AC017118.3|AC017118 Genomic sequence for Arabidopsis thaliana BAC F6N18 from chromosome I, complete sequence Length = 92219 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 cgtcttcttcgtcttcctcg 56 |||||||||||||||||||| Sbjct: 31623 cgtcttcttcgtcttcctcg 31604
>gb|BT005984.1| Arabidopsis thaliana At3g52090 gene, complete cds Length = 351 Score = 40.1 bits (20), Expect = 9.6 Identities = 83/104 (79%) Strand = Plus / Plus Query: 315 cctcacccccttcagtacaagatcattgttaggatccatactgcaagccaatcctcccca 374 ||||| || ||| ||||||| ||||| || ||||| || || ||||||| || |||||| Sbjct: 190 cctcatcctcttaagtacaaaatcatagtgaggattcacacaacaagccagtcttcccca 249 Query: 375 acacaggcatatacccaggcaatcaatgatctagacaaggagct 418 | || ||||| | |||||| |||||||| | ||||||||||| Sbjct: 250 atgcaagcatacaaccaggccatcaatgacttggacaaggagct 293
>ref|XM_219594.3| PREDICTED: Rattus norvegicus similar to membrane-spanning 4-domains, subfamily A, member 4C (LOC293746), mRNA Length = 2280 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 gaatttcagaggaaggagga 107 |||||||||||||||||||| Sbjct: 169 gaatttcagaggaaggagga 150
>emb|AL831750.8| Mouse DNA sequence from clone RP23-37L2 on chromosome X, complete sequence Length = 189991 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 434 agcttttgaggtctgtttct 453 |||||||||||||||||||| Sbjct: 17206 agcttttgaggtctgtttct 17187
>dbj|AK105411.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-G06, full insert sequence Length = 2799 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 cgtcttcttcgtcttcctcg 56 |||||||||||||||||||| Sbjct: 29 cgtcttcttcgtcttcctcg 48
>gb|AC102730.15| Mus musculus chromosome 5, clone RP24-194J15, complete sequence Length = 167135 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 163 ctgagggcacaaagaaggtgtctt 186 ||||||||||||||||| |||||| Sbjct: 27825 ctgagggcacaaagaagctgtctt 27848
>gb|AC007436.1| Homo sapiens 12 BAC RP11-436I9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 163881 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 aggaatttcagaggaaggag 105 |||||||||||||||||||| Sbjct: 3421 aggaatttcagaggaaggag 3402
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 ccgccgtcttcttcgtcttc 52 |||||||||||||||||||| Sbjct: 5559006 ccgccgtcttcttcgtcttc 5559025
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 cgtcttcttcgtcttcctcg 56 |||||||||||||||||||| Sbjct: 1140385 cgtcttcttcgtcttcctcg 1140366
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 cgtcttcttcgtcttcctcg 56 |||||||||||||||||||| Sbjct: 28532 cgtcttcttcgtcttcctcg 28551
>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica Length = 3633272 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 36 ccgtcttcttcgtcttcctcggag 59 ||||||||||||||||| |||||| Sbjct: 1906188 ccgtcttcttcgtcttcttcggag 1906165
>gb|U28048.1|ATU28048 Arabidopsis thaliana RNA polymerase II 13.6 kDa subunit (AtRPB13.6) mRNA, complete cds Length = 617 Score = 40.1 bits (20), Expect = 9.6 Identities = 83/104 (79%) Strand = Plus / Plus Query: 315 cctcacccccttcagtacaagatcattgttaggatccatactgcaagccaatcctcccca 374 ||||| || ||| ||||||| ||||| || ||||| || || ||||||| || |||||| Sbjct: 241 cctcatcctcttaagtacaaaatcatagtgaggattcacacaacaagccagtcttcccca 300 Query: 375 acacaggcatatacccaggcaatcaatgatctagacaaggagct 418 | || ||||| | |||||| |||||||| | ||||||||||| Sbjct: 301 atgcaagcatacaaccaggccatcaatgacttggacaaggagct 344
>gb|AC008868.4| Homo sapiens chromosome 5 clone CTD-2194F4, complete sequence Length = 123698 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 653 gtagagaaaaaatagtcagg 672 |||||||||||||||||||| Sbjct: 16609 gtagagaaaaaatagtcagg 16590 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,717,044 Number of Sequences: 3902068 Number of extensions: 5717044 Number of successful extensions: 116112 Number of sequences better than 10.0: 62 Number of HSP's better than 10.0 without gapping: 62 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 115695 Number of HSP's gapped (non-prelim): 417 length of query: 703 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 680 effective length of database: 17,143,297,704 effective search space: 11657442438720 effective search space used: 11657442438720 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)