>ZN313_BOVIN (Q4U5R4) Zinc finger protein 313|
          Length = 230

 Score = 39.3 bits (90), Expect = 0.009
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
 Frame = +1

Query: 22  YNCPFCGE-DFDFVGLCCHIDDEHAVEAKSGICPICATRV-------GVDLIGHLTMQH 174
           + CP+C E +FD  GL  H    H+ + KS +CPICA+           + I HL  +H
Sbjct: 143 FPCPYCPEKNFDQEGLVEHCKLSHSTDTKSVVCPICASMPWGDPNYRSANFIEHLQRRH 201

>ZN313_RAT (Q6J2U6) Zinc finger protein 313|
          Length = 229

 Score = 38.5 bits (88), Expect = 0.015
 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +1

Query: 22  YNCPFCGE-DFDFVGLCCHIDDEHAVEAKSGICPICAT 132
           + CP+C E +FD  GL  H    H+ + KS +CPICA+
Sbjct: 142 FPCPYCPEKNFDQEGLVEHCKLTHSTDTKSVVCPICAS 179

>ZN313_MOUSE (Q9ET26) Zinc finger protein 313|
          Length = 229

 Score = 38.5 bits (88), Expect = 0.015
 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +1

Query: 22  YNCPFCGE-DFDFVGLCCHIDDEHAVEAKSGICPICAT 132
           + CP+C E +FD  GL  H    H+ + KS +CPICA+
Sbjct: 142 FPCPYCPEKNFDQEGLVEHCKLTHSTDTKSVVCPICAS 179

>ZN313_PIG (Q6J1I8) Zinc finger protein 313|
          Length = 228

 Score = 38.1 bits (87), Expect = 0.020
 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +1

Query: 22  YNCPFCGE-DFDFVGLCCHIDDEHAVEAKSGICPICAT 132
           + CP+C E +FD  GL  H    H+ + KS +CPICA+
Sbjct: 141 FPCPYCPEKNFDQEGLVEHCKLVHSTDTKSVVCPICAS 178

>ZN313_PANTR (Q6J212) Zinc finger protein 313|
          Length = 228

 Score = 37.7 bits (86), Expect = 0.026
 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +1

Query: 22  YNCPFCGE-DFDFVGLCCHIDDEHAVEAKSGICPICAT 132
           + CP+C E +FD  GL  H    H+ + KS +CPICA+
Sbjct: 141 FPCPYCPEKNFDQEGLVEHCKLFHSTDTKSVVCPICAS 178

>ZN313_HUMAN (Q9Y508) Zinc finger protein 313 (RING finger protein 114)|
          Length = 228

 Score = 37.7 bits (86), Expect = 0.026
 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +1

Query: 22  YNCPFCGE-DFDFVGLCCHIDDEHAVEAKSGICPICAT 132
           + CP+C E +FD  GL  H    H+ + KS +CPICA+
Sbjct: 141 FPCPYCPEKNFDQEGLVEHCKLFHSTDTKSVVCPICAS 178

>RN125_MACFA (Q95KF1) RING finger protein 125 (EC 6.3.2.-)|
          Length = 231

 Score = 33.1 bits (74), Expect = 0.63
 Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 7/68 (10%)
 Frame = +1

Query: 4   GTRAEAYNCPFCGEDFDFVGLCCHIDDEHAVEAKSGICPIC-------ATRVGVDLIGHL 162
           G  A    CPFC  + D   L  H    H  E +   CP+C        +     LI HL
Sbjct: 132 GETAARCVCPFCQRELDEDSLLDHCITHHRSERRPVFCPLCRLIPDENPSSFSGSLIRHL 191

Query: 163 TMQHGSYF 186
            + H  ++
Sbjct: 192 QVSHTLFY 199

>RN125_MOUSE (Q9D9R0) RING finger protein 125 (EC 6.3.2.-)|
          Length = 232

 Score = 32.7 bits (73), Expect = 0.82
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 7/60 (11%)
 Frame = +1

Query: 28  CPFCGEDFDFVGLCCHIDDEHAVEAKSGICPICATR-------VGVDLIGHLTMQHGSYF 186
           CPFC  + D   L  H    H  E +   CP+C +R           LI HL + H  ++
Sbjct: 141 CPFCQRELDEDCLLDHCIIHHRSERRPVFCPLCHSRPDESPSTFNGSLIRHLQVSHTLFY 200

>RB11C_TOBAC (Q40520) Ras-related protein Rab11C|
          Length = 222

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -3

Query: 500 QNEAAEITKLEVTYLSTIFSSGNLFSK-NVLSDESERKSFDGSATGK 363
           +  A E TKLE  +L+ +    N+ +K N+ +DE++  S   S TGK
Sbjct: 156 ETSAMEATKLEDAFLTVLTEIFNIVNKKNLAADENQSNSNPASLTGK 202

>SYL_VIBVY (Q7MN06) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 857

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 117 PHLCYEGWGGL-DRPLDNAAWKLLQDATQAQSPKSI 221
           PH+C+E W  L  + +DNA+W    +    +  K I
Sbjct: 764 PHICFEMWTALGQQDIDNASWPTYDEQALVEDEKLI 799

>SYL_VIBVU (Q8DFE2) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 857

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 117 PHLCYEGWGGL-DRPLDNAAWKLLQDATQAQSPKSI 221
           PH+C+E W  L  + +DNA+W    +    +  K I
Sbjct: 764 PHICFEMWTALGQQDIDNASWPTYDEQALVEDEKLI 799

>SYL_VIBPA (Q87RQ0) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 857

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 117 PHLCYEGWGGL-DRPLDNAAWKLLQDATQAQSPKSI 221
           PH+ YE W  L +  +DNAAW    +    +  K+I
Sbjct: 764 PHISYELWTALGESDIDNAAWPTFDEKALVEDEKTI 799

>SUHW1_HUMAN (P59817) Suppressor of hairy wing homolog 1 (3'OY11.1)|
          Length = 542

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 17/52 (32%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
 Frame = +1

Query: 28  CPFCGEDFDF-VGLCCHIDDEHAVEAKSGICPICATRVGVD--LIGHLTMQH 174
           C  C   F     L CHID  H     S +C IC      D  L+ H+   H
Sbjct: 336 CQHCHRQFPTPFQLQCHIDSVHIAMGPSAVCKICELSFETDQVLLQHMKDHH 387

>MCPH1_HYLLA (P61592) Microcephalin|
          Length = 840

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = -3

Query: 143 TPTLVAQMGHIPLLASTACSSSMWQQRPTKSKSSPQKGQ 27
           +PTL +  GH+ L+ S   SSS+ +QR +    SP KG+
Sbjct: 333 SPTLSSTKGHL-LIRSRPSSSSVKRQRVSHGSHSPSKGK 370

>AGAR_ALTAT (P13734) Beta-agarase precursor (EC 3.2.1.81)|
          Length = 505

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +3

Query: 117 PHLCYEGWGGLDRPLDNAAWKLLQD 191
           PH+  E +GG +RP++NA W  L+D
Sbjct: 317 PHVISE-YGGRNRPMENAPWSALRD 340

>SINA4_ARATH (Q9STN8) Ubiquitin ligase SINAT4 (EC 6.3.2.-) (Seven in absentia|
           homolog 4)
          Length = 327

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
 Frame = +1

Query: 22  YNCPFCGEDFDFVG----LCCHIDDEHAVEAKSG 111
           Y+CP+ G +   VG    L  H+ D+H V+  +G
Sbjct: 150 YSCPYAGSECGIVGDIPFLVAHLRDDHKVDMHAG 183

>RN125_HUMAN (Q96EQ8) RING finger protein 125 (EC 6.3.2.-) (T-cell RING|
           activation protein 1) (TRAC-1)
          Length = 231

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 7/60 (11%)
 Frame = +1

Query: 28  CPFCGEDFDFVGLCCHIDDEHAVEAKSGICPIC-------ATRVGVDLIGHLTMQHGSYF 186
           CPFC  +     L  H    H  E +   CP+C        +     LI HL + H  ++
Sbjct: 140 CPFCQRELYEDSLLDHCITHHRSERRPVFCPLCRLIPDENPSSFSGSLIRHLQVSHTLFY 199

>SUHW2_HUMAN (Q86YH2) Suppressor of hairy wing homolog 2 (5'OY11.1) (Zinc finger|
           protein 632)
          Length = 543

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
 Frame = +1

Query: 28  CPFCGEDFDF-VGLCCHIDDEHAVEAKSGICPICATRVGVD--LIGHLTMQH 174
           C  C   F     L CHI++ H  +  S +C IC      D  L+ H+   H
Sbjct: 345 CQHCHRQFPTPFQLQCHIENVHTAQEPSTVCKICELSFETDQVLLQHMKDHH 396


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,085,986
Number of Sequences: 219361
Number of extensions: 1552350
Number of successful extensions: 4786
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 4578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4786
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5253413348
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)