ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd21e15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK101263.1| Oryza sativa (japonica cultivar-group) cDNA clon... 583 e-163
2dbj|AK061141.1| Oryza sativa (japonica cultivar-group) cDNA clon... 583 e-163
3gb|AC104272.5| Oryza sativa (japonica cultivar-group) chromosome... 430 e-117
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 430 e-117
5gb|AY106338.1| Zea mays PCO074336 mRNA sequence 400 e-108
6dbj|AK070900.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 1e-26
7gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 44 0.52
8gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 44 0.52
9emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 44 0.52
10gb|AC129803.3| Homo sapiens 3 BAC RP11-15N24 (Roswell Park Cance... 44 0.52
11gb|BC093085.1| Homo sapiens cDNA clone IMAGE:30530427 44 0.52
12dbj|AB091435.1| Burkholderia multivorans genes for probable lipo... 44 0.52
13gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 44 0.52
14gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 42 2.1
15gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 42 2.1
16gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 42 2.1
17emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 42 2.1
18emb|BX294444.7| Zebrafish DNA sequence from clone CH211-281E15 i... 42 2.1
19gb|AC068207.6| Homo sapiens chromosome 8, clone RP11-26K8, compl... 42 2.1
20dbj|AP006304.1| Homo sapiens genomic DNA, chromosome 8 clone:RP1... 42 2.1
21gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 42 2.1
22dbj|AP000071.1| Homo sapiens genomic DNA, chromosome 8p11.2, sen... 42 2.1
23ref|NM_119602.1| Arabidopsis thaliana ubiquitin-protein ligase/ ... 40 8.2
24ref|NM_111347.1| Arabidopsis thaliana unknown protein AT3G04750 ... 40 8.2
25ref|XM_465933.1| Oryza sativa (japonica cultivar-group), mRNA 40 8.2
26gb|AE014842.1| Plasmodium falciparum 3D7 chromosome 11 section 7... 40 8.2
27gb|AY028643.1| Plasmodium falciparum erythrocyte membrane protei... 40 8.2
28gb|AC011437.6|ATAC011437 Arabidopsis thaliana chromosome III BAC... 40 8.2
29gb|AC122372.4| Mus musculus BAC clone RP23-463P4 from chromosome... 40 8.2
30emb|AL355975.10| Human DNA sequence from clone RP11-468C2 on chr... 40 8.2
31emb|AL353732.14| Human DNA sequence from clone RP11-354P17 on ch... 40 8.2
32gb|AF188024.3| Homo sapiens chromosome 12 clone CTC-790L10 map 1... 40 8.2
33emb|AL021997.1|HS874C20 Human DNA sequence from clone RP5-874C20... 40 8.2
34gb|AY117264.1| Arabidopsis thaliana unknown protein (At4g34370) ... 40 8.2
35gb|AY050864.1| Arabidopsis thaliana unknown protein (At4g34370) ... 40 8.2
36emb|AL161585.2|ATCHRIV81 Arabidopsis thaliana DNA chromosome 4, ... 40 8.2
37emb|AL035521.1|ATF10M10 Arabidopsis thaliana DNA chromosome 4, B... 40 8.2
38emb|BX897714.6| Zebrafish DNA sequence from clone DKEY-218L23 in... 40 8.2
39emb|CR937026.1|PT085P01 Pan troglodytes chromosome 11 BAC PTB-08... 40 8.2
40emb|BX470259.9| Zebrafish DNA sequence from clone CH211-225N18 i... 40 8.2
41dbj|AK123280.1| Homo sapiens cDNA FLJ41286 fis, clone BRAMY2038475 40 8.2
42gb|AC022363.24| Homo sapiens 12 BAC RP11-1151B7 (Roswell Park Ca... 40 8.2
43dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
44dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
45emb|BX255890.6| Zebrafish DNA sequence from clone CH211-236L15, ... 40 8.2
46gb|AC005678.1|AC005678 Homo sapiens PAC clone RP11-569I24 from 7... 40 8.2
47gb|AC003667.3| Homo sapiens X PAC RP1-17L20 (Roswell Park Cancer... 40 8.2
48gb|AC122335.4| Mus musculus BAC clone RP23-350F7 from chromosome... 40 8.2
49dbj|AP005928.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
50dbj|AP004861.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
51gb|AC132867.6| Mus musculus chromosome 1, clone RP24-388I23, com... 40 8.2
52gb|AC110572.13| Mus musculus chromosome 5, clone RP23-316P20, co... 40 8.2
53gb|AC118643.6| Mus musculus chromosome 1, clone RP24-113H21, com... 40 8.2
54emb|AJ510204.1|ATH510204 Arabidopsis thaliana ari1 gene for ARIA... 40 8.2
55emb|AL672106.9| Mouse DNA sequence from clone RP23-372E6 on chro... 40 8.2 
>dbj|AK101263.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033032J06, full
           insert sequence
          Length = 1287

 Score =  583 bits (294), Expect = e-163
 Identities = 399/434 (91%)
 Strand = Plus / Plus

                                                                       
Query: 15  ggaggcctacaactgccccttttgcggcgaggatttcgatttcgtaggcctctgctgcca 74
           |||||| |||||||||||||| ||||||||||| ||||| ||||| | | ||||||||||
Sbjct: 299 ggaggcgtacaactgccccttctgcggcgaggacttcgacttcgtcgccttctgctgcca 358

                                                                       
Query: 75  catcgacgacgagcacgccgtcgaggccaagagcgggatatgccccatctgtgctacgag 134
           | ||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||
Sbjct: 359 cgtcgacgacgagcacgccgtcgaggccaagagcggggtatgtcccatctgtgctacaag 418

                                                                       
Query: 135 ggttggggtggacttgataggccacttgacaatgcagcatggaagttacttcaagatgca 194
           |||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 419 ggttggagtggacttgataggtcacttgacaatgcagcatggaagttactttaagatgca 478

                                                                       
Query: 195 acgcaggcgcagagtccgaaaagtatctcctgggtcccattctttgctgtctttgttgag 254
           ||||||||| |||||||||||| ||||| | ||||||||||||||| |||||||||||||
Sbjct: 479 acgcaggcgaagagtccgaaaaatatcttcagggtcccattctttgttgtctttgttgag 538

                                                                       
Query: 255 aaaggatttaagagacggcagtttgcagtcctttcttggtggatcatcctatgtatctaa 314
           |||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 539 aaaggacttaagagatggcagtctgcagtcctttcttggtggatcatcctatgtatctaa 598

                                                                       
Query: 315 tcctcccgccgcagcccctgatccatttttgtcatctttaatttgtagtttgcctgtggc 374
           |||||| || || || || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 tcctcctgctgctgcaccagatccatttttgtcatctttaatttgtagtttgcctgtggc 658

                                                                       
Query: 375 tgagccatcgaaagattttcgttccgactcatctgacaaaacatttttgctaaataaatt 434
           ||| ||||| |||||||| | |||||||||||||||||| |  |||||||||||||||||
Sbjct: 659 tgaaccatccaaagatttacattccgactcatctgacaataactttttgctaaataaatt 718

                         
Query: 435 cccagatgaaaaga 448
           ||||||||| ||||
Sbjct: 719 cccagatgacaaga 732
to top
>dbj|AK061141.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-C03, full
           insert sequence
          Length = 1248

 Score =  583 bits (294), Expect = e-163
 Identities = 399/434 (91%)
 Strand = Plus / Plus

                                                                       
Query: 15  ggaggcctacaactgccccttttgcggcgaggatttcgatttcgtaggcctctgctgcca 74
           |||||| |||||||||||||| ||||||||||| ||||| ||||| | | ||||||||||
Sbjct: 230 ggaggcgtacaactgccccttctgcggcgaggacttcgacttcgtcgccttctgctgcca 289

                                                                       
Query: 75  catcgacgacgagcacgccgtcgaggccaagagcgggatatgccccatctgtgctacgag 134
           | ||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||
Sbjct: 290 cgtcgacgacgagcacgccgtcgaggccaagagcggggtatgtcccatctgtgctacaag 349

                                                                       
Query: 135 ggttggggtggacttgataggccacttgacaatgcagcatggaagttacttcaagatgca 194
           |||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 350 ggttggagtggacttgataggtcacttgacaatgcagcatggaagttactttaagatgca 409

                                                                       
Query: 195 acgcaggcgcagagtccgaaaagtatctcctgggtcccattctttgctgtctttgttgag 254
           ||||||||| |||||||||||| ||||| | ||||||||||||||| |||||||||||||
Sbjct: 410 acgcaggcgaagagtccgaaaaatatcttcagggtcccattctttgttgtctttgttgag 469

                                                                       
Query: 255 aaaggatttaagagacggcagtttgcagtcctttcttggtggatcatcctatgtatctaa 314
           |||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 470 aaaggacttaagagatggcagtctgcagtcctttcttggtggatcatcctatgtatctaa 529

                                                                       
Query: 315 tcctcccgccgcagcccctgatccatttttgtcatctttaatttgtagtttgcctgtggc 374
           |||||| || || || || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 tcctcctgctgctgcaccagatccatttttgtcatctttaatttgtagtttgcctgtggc 589

                                                                       
Query: 375 tgagccatcgaaagattttcgttccgactcatctgacaaaacatttttgctaaataaatt 434
           ||| ||||| |||||||| | |||||||||||||||||| |  |||||||||||||||||
Sbjct: 590 tgaaccatccaaagatttacattccgactcatctgacaataactttttgctaaataaatt 649

                         
Query: 435 cccagatgaaaaga 448
           ||||||||| ||||
Sbjct: 650 cccagatgacaaga 663
to top
>gb|AC104272.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1045_C06,
             complete sequence
          Length = 143130

 Score =  430 bits (217), Expect = e-117
 Identities = 322/357 (90%)
 Strand = Plus / Minus

                                                                         
Query: 190   atgcaacgcaggcgcagagtccgaaaagtatctcctgggtcccattctttgctgtctttg 249
             |||||||||||||| |||||||||||| ||||| | ||||||||||||||| ||||||||
Sbjct: 67369 atgcaacgcaggcgaagagtccgaaaaatatcttcagggtcccattctttgttgtctttg 67310

                                                                         
Query: 250   ttgagaaaggatttaagagacggcagtttgcagtcctttcttggtggatcatcctatgta 309
             ||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 67309 ttgagaaaggacttaagagatggcagtctgcagtcctttcttggtggatcatcctatgta 67250

                                                                         
Query: 310   tctaatcctcccgccgcagcccctgatccatttttgtcatctttaatttgtagtttgcct 369
             ||||||||||| || || || || ||||||||||||||||||||||||||||||||||||
Sbjct: 67249 tctaatcctcctgctgctgcaccagatccatttttgtcatctttaatttgtagtttgcct 67190

                                                                         
Query: 370   gtggctgagccatcgaaagattttcgttccgactcatctgacaaaacatttttgctaaat 429
             |||||||| ||||| |||||||| | |||||||||||||||||| |  ||||||||||||
Sbjct: 67189 gtggctgaaccatccaaagatttacattccgactcatctgacaataactttttgctaaat 67130

                                                                         
Query: 430   aaattcccagatgaaaagatcgtagagaggtatgtcacctcaagctttgttatttctgcc 489
             |||||||||||||| ||||  | |||||||||||||||||||||||||| | ||||||||
Sbjct: 67129 aaattcccagatgacaagactgcagagaggtatgtcacctcaagctttgctctttctgcc 67070

                                                                      
Query: 490   gcctcattctgccccctttttgccatgatactactgtatctgctcagtgaatgatag 546
             |||||| || || |||| |||||||  |||| |||||||||| |||||| |||||||
Sbjct: 67069 gcctcactccgctccctctttgccacaataccactgtatctggtcagtggatgatag 67013



 Score =  129 bits (65), Expect = 1e-26
 Identities = 89/97 (91%)
 Strand = Plus / Minus

                                                                         
Query: 15    ggaggcctacaactgccccttttgcggcgaggatttcgatttcgtaggcctctgctgcca 74
             |||||| |||||||||||||| ||||||||||| ||||| ||||| | | ||||||||||
Sbjct: 70645 ggaggcgtacaactgccccttctgcggcgaggacttcgacttcgtcgccttctgctgcca 70586

                                                  
Query: 75    catcgacgacgagcacgccgtcgaggccaagagcggg 111
             | |||||||||||||||||||||||||||||||||||
Sbjct: 70585 cgtcgacgacgagcacgccgtcgaggccaagagcggg 70549



 Score =  117 bits (59), Expect = 4e-23
 Identities = 74/79 (93%)
 Strand = Plus / Minus

                                                                         
Query: 113   tatgccccatctgtgctacgagggttggggtggacttgataggccacttgacaatgcagc 172
             |||| |||||||||||||| |||||||| |||||||||||||| ||||||||||||||||
Sbjct: 67584 tatgtcccatctgtgctacaagggttggagtggacttgataggtcacttgacaatgcagc 67525

                                
Query: 173   atggaagttacttcaagat 191
             ||||||||||||| |||||
Sbjct: 67524 atggaagttactttaagat 67506
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  430 bits (217), Expect = e-117
 Identities = 322/357 (90%)
 Strand = Plus / Minus

                                                                            
Query: 190      atgcaacgcaggcgcagagtccgaaaagtatctcctgggtcccattctttgctgtctttg 249
                |||||||||||||| |||||||||||| ||||| | ||||||||||||||| ||||||||
Sbjct: 16854873 atgcaacgcaggcgaagagtccgaaaaatatcttcagggtcccattctttgttgtctttg 16854814

                                                                            
Query: 250      ttgagaaaggatttaagagacggcagtttgcagtcctttcttggtggatcatcctatgta 309
                ||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 16854813 ttgagaaaggacttaagagatggcagtctgcagtcctttcttggtggatcatcctatgta 16854754

                                                                            
Query: 310      tctaatcctcccgccgcagcccctgatccatttttgtcatctttaatttgtagtttgcct 369
                ||||||||||| || || || || ||||||||||||||||||||||||||||||||||||
Sbjct: 16854753 tctaatcctcctgctgctgcaccagatccatttttgtcatctttaatttgtagtttgcct 16854694

                                                                            
Query: 370      gtggctgagccatcgaaagattttcgttccgactcatctgacaaaacatttttgctaaat 429
                |||||||| ||||| |||||||| | |||||||||||||||||| |  ||||||||||||
Sbjct: 16854693 gtggctgaaccatccaaagatttacattccgactcatctgacaataactttttgctaaat 16854634

                                                                            
Query: 430      aaattcccagatgaaaagatcgtagagaggtatgtcacctcaagctttgttatttctgcc 489
                |||||||||||||| ||||  | |||||||||||||||||||||||||| | ||||||||
Sbjct: 16854633 aaattcccagatgacaagactgcagagaggtatgtcacctcaagctttgctctttctgcc 16854574

                                                                         
Query: 490      gcctcattctgccccctttttgccatgatactactgtatctgctcagtgaatgatag 546
                |||||| || || |||| |||||||  |||| |||||||||| |||||| |||||||
Sbjct: 16854573 gcctcactccgctccctctttgccacaataccactgtatctggtcagtggatgatag 16854517



 Score =  129 bits (65), Expect = 1e-26
 Identities = 89/97 (91%)
 Strand = Plus / Minus

                                                                            
Query: 15       ggaggcctacaactgccccttttgcggcgaggatttcgatttcgtaggcctctgctgcca 74
                |||||| |||||||||||||| ||||||||||| ||||| ||||| | | ||||||||||
Sbjct: 16858149 ggaggcgtacaactgccccttctgcggcgaggacttcgacttcgtcgccttctgctgcca 16858090

                                                     
Query: 75       catcgacgacgagcacgccgtcgaggccaagagcggg 111
                | |||||||||||||||||||||||||||||||||||
Sbjct: 16858089 cgtcgacgacgagcacgccgtcgaggccaagagcggg 16858053



 Score =  117 bits (59), Expect = 4e-23
 Identities = 74/79 (93%)
 Strand = Plus / Minus

                                                                            
Query: 113      tatgccccatctgtgctacgagggttggggtggacttgataggccacttgacaatgcagc 172
                |||| |||||||||||||| |||||||| |||||||||||||| ||||||||||||||||
Sbjct: 16855088 tatgtcccatctgtgctacaagggttggagtggacttgataggtcacttgacaatgcagc 16855029

                                   
Query: 173      atggaagttacttcaagat 191
                ||||||||||||| |||||
Sbjct: 16855028 atggaagttactttaagat 16855010
to top
>gb|AY106338.1| Zea mays PCO074336 mRNA sequence
          Length = 849

 Score =  400 bits (202), Expect = e-108
 Identities = 301/334 (90%)
 Strand = Plus / Plus

                                                                       
Query: 114 atgccccatctgtgctacgagggttggggtggacttgataggccacttgacaatgcagca 173
           |||||||||||||||||| ||||| ||  ||||||||||||| || ||||| ||||| ||
Sbjct: 61  atgccccatctgtgctacaagggtcggaatggacttgataggacatttgactatgcaaca 120

                                                                       
Query: 174 tggaagttacttcaagatgcaacgcaggcgcagagtccgaaaagtatctcctgggtccca 233
           ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 121 tggaagttatttcaagatgcaacgcaggcgcagagtccgaaaagtatcttctgggtccca 180

                                                                       
Query: 234 ttctttgctgtctttgttgagaaaggatttaagagacggcagtttgcagtcctttcttgg 293
           ||||||  | ||||||||||||||||| || ||| | |||||||||||||| ||||| ||
Sbjct: 181 ttctttattatctttgttgagaaaggacttgagaaatggcagtttgcagtcatttctcgg 240

                                                                       
Query: 294 tggatcatcctatgtatctaatcctcccgccgcagcccctgatccatttttgtcatcttt 353
           |||||||||||||||||| |||||||| || ||||| || ||||||||| ||||||||||
Sbjct: 241 tggatcatcctatgtatccaatcctcctgctgcagcaccagatccatttgtgtcatcttt 300

                                                                       
Query: 354 aatttgtagtttgcctgtggctgagccatcgaaagattttcgttccgactcatctgacaa 413
           |||||||| ||||||||||||||| ||||| |||||||| | ||||||||||||||||||
Sbjct: 301 aatttgtactttgcctgtggctgaaccatccaaagatttacattccgactcatctgacaa 360

                                             
Query: 414 aacatttttgctaaataaattcccagatgaaaag 447
            |  ||||||||||||||||||||||||||||||
Sbjct: 361 taactttttgctaaataaattcccagatgaaaag 394
to top
>dbj|AK070900.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023073C10, full
            insert sequence
          Length = 3331

 Score =  129 bits (65), Expect = 1e-26
 Identities = 89/97 (91%)
 Strand = Plus / Plus

                                                                        
Query: 15   ggaggcctacaactgccccttttgcggcgaggatttcgatttcgtaggcctctgctgcca 74
            |||||| |||||||||||||| ||||||||||| ||||| ||||| | | ||||||||||
Sbjct: 2010 ggaggcgtacaactgccccttctgcggcgaggacttcgacttcgtcgccttctgctgcca 2069

                                                 
Query: 75   catcgacgacgagcacgccgtcgaggccaagagcggg 111
            | |||||||||||||||||||||||||||||||||||
Sbjct: 2070 cgtcgacgacgagcacgccgtcgaggccaagagcggg 2106
to top
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 77      tcgacgacgagcacgccgtcga 98
               ||||||||||||||||||||||
Sbjct: 2435102 tcgacgacgagcacgccgtcga 2435123
to top
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 77      tcgacgacgagcacgccgtcga 98
               ||||||||||||||||||||||
Sbjct: 1014475 tcgacgacgagcacgccgtcga 1014496
to top
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 77      tcgacgacgagcacgccgtcga 98
               ||||||||||||||||||||||
Sbjct: 2331966 tcgacgacgagcacgccgtcga 2331987
to top
>gb|AC129803.3| Homo sapiens 3 BAC RP11-15N24 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 185721

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 223    cctgggtcccattctttgctgt 244
              ||||||||||||||||||||||
Sbjct: 132739 cctgggtcccattctttgctgt 132718
to top
>gb|BC093085.1| Homo sapiens cDNA clone IMAGE:30530427
          Length = 2560

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 223 cctgggtcccattctttgctgt 244
           ||||||||||||||||||||||
Sbjct: 69  cctgggtcccattctttgctgt 48
to top
>dbj|AB091435.1| Burkholderia multivorans genes for probable lipoprotein transmembrane,
             3-isopropylmalate dehydratase large and small subunits,
             3-isopropylmalate dehydrogenase oxidoreductase,
             aspartate-semialdehyde dehydrogenase, probable
             transmembrane protein, tRNA pseudouridine synthase,
             N-(5'-phosphoribosyl) anthranilate isomerase, tryptophan
             synthase beta chain, probable DNA-methyltransferasee,
             tryptophan synthase alpha chain, acetyl-CoA carboxylase
             beta subunit, partial and complete cds
          Length = 12977

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 77    tcgacgacgagcacgccgtcga 98
             ||||||||||||||||||||||
Sbjct: 12225 tcgacgacgagcacgccgtcga 12204
to top
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 77     tcgacgacgagcacgccgtcga 98
              ||||||||||||||||||||||
Sbjct: 797596 tcgacgacgagcacgccgtcga 797575
to top
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 77      tcgacgacgagcacgccgtcg 97
               |||||||||||||||||||||
Sbjct: 2401306 tcgacgacgagcacgccgtcg 2401286
to top
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 77      tcgacgacgagcacgccgtcg 97
               |||||||||||||||||||||
Sbjct: 1633087 tcgacgacgagcacgccgtcg 1633067
to top
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 77      tcgacgacgagcacgccgtcg 97
               |||||||||||||||||||||
Sbjct: 2879801 tcgacgacgagcacgccgtcg 2879781
to top
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 77      tcgacgacgagcacgccgtcg 97
               |||||||||||||||||||||
Sbjct: 2609962 tcgacgacgagcacgccgtcg 2609942
to top
>emb|BX294444.7| Zebrafish DNA sequence from clone CH211-281E15 in linkage group 14,
              complete sequence
          Length = 169694

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 412    aaaacatttttgctaaataaa 432
              |||||||||||||||||||||
Sbjct: 137670 aaaacatttttgctaaataaa 137690
to top
>gb|AC068207.6| Homo sapiens chromosome 8, clone RP11-26K8, complete sequence
          Length = 168843

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 240   gctgtctttgttgagaaagga 260
             |||||||||||||||||||||
Sbjct: 91590 gctgtctttgttgagaaagga 91570
to top
>dbj|AP006304.1| Homo sapiens genomic DNA, chromosome 8 clone:RP11-53I21, complete
             sequence
          Length = 156583

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 240   gctgtctttgttgagaaagga 260
             |||||||||||||||||||||
Sbjct: 22760 gctgtctttgttgagaaagga 22740
to top
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 77      tcgacgacgagcacgccgtcg 97
               |||||||||||||||||||||
Sbjct: 2279117 tcgacgacgagcacgccgtcg 2279137
to top
>dbj|AP000071.1| Homo sapiens genomic DNA, chromosome 8p11.2, senescence gene region,
             section 7/19
          Length = 100000

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 240   gctgtctttgttgagaaagga 260
             |||||||||||||||||||||
Sbjct: 39003 gctgtctttgttgagaaagga 39023
to top
>ref|NM_119602.1| Arabidopsis thaliana ubiquitin-protein ligase/ zinc ion binding
           AT4G34370 mRNA, complete cds
          Length = 2280

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 237 tttgctgtctttgttgagaaagga 260
           |||||||| |||||||||||||||
Sbjct: 470 tttgctgtgtttgttgagaaagga 493
to top
>ref|NM_111347.1| Arabidopsis thaliana unknown protein AT3G04750 mRNA, complete cds
          Length = 1986

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 36 ttgcggcgaggatttcgatt 55
          ||||||||||||||||||||
Sbjct: 19 ttgcggcgaggatttcgatt 38
to top
>ref|XM_465933.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1074

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 77  tcgacgacgagcacgccgtc 96
           ||||||||||||||||||||
Sbjct: 731 tcgacgacgagcacgccgtc 712
to top
>gb|AE014842.1| Plasmodium falciparum 3D7 chromosome 11 section 7 of 8 of the complete
             sequence
          Length = 253151

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 338   catttttgtcatctttaatttgta 361
             ||||||| ||||||||||||||||
Sbjct: 23042 catttttatcatctttaatttgta 23065
to top
>gb|AY028643.1| Plasmodium falciparum erythrocyte membrane protein-1 (var) gene,
            partial cds
          Length = 8750

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 337  ccatttttgtcatctttaat 356
            ||||||||||||||||||||
Sbjct: 6839 ccatttttgtcatctttaat 6820
to top
>gb|AC011437.6|ATAC011437 Arabidopsis thaliana chromosome III BAC F7O18 genomic sequence,
             complete sequence
          Length = 95310

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 36    ttgcggcgaggatttcgatt 55
             ||||||||||||||||||||
Sbjct: 81711 ttgcggcgaggatttcgatt 81692
to top
>gb|AC122372.4| Mus musculus BAC clone RP23-463P4 from chromosome 10, complete sequence
          Length = 183391

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 409    gacaaaacatttttgctaaa 428
              ||||||||||||||||||||
Sbjct: 170123 gacaaaacatttttgctaaa 170142
to top
>emb|AL355975.10| Human DNA sequence from clone RP11-468C2 on chromosome 9, complete
             sequence
          Length = 131705

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 526   tatctgctcagtgaatgata 545
             ||||||||||||||||||||
Sbjct: 33942 tatctgctcagtgaatgata 33923
to top
>emb|AL353732.14| Human DNA sequence from clone RP11-354P17 on chromosome 9 Contains the
              IFNA6 gene for interferon, alpha 6, the IFNA13 gene for
              interferon, alpha 13, the IFNA2 gene for interferon, alpha
              2, the IFNA8 gene for interferon, alpha 8, an interferon,
              omega 1 (IFNW1) pseudogene, the IFNA1 gene for interferon,
              alpha 1, 4 interferon pseudogenes, the 3' end of a novel
              gene and a CpG island, complete sequence
          Length = 173211

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 339    atttttgtcatctttaattt 358
              ||||||||||||||||||||
Sbjct: 116628 atttttgtcatctttaattt 116647



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 339   atttttgtcatctttaattt 358
             ||||||||||||||||||||
Sbjct: 12844 atttttgtcatctttaattt 12825
to top
>gb|AF188024.3| Homo sapiens chromosome 12 clone CTC-790L10 map 12p11.2, complete
             sequence
          Length = 111108

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 350   ctttaatttgtagtttgcct 369
             ||||||||||||||||||||
Sbjct: 40247 ctttaatttgtagtttgcct 40228
to top
>emb|AL021997.1|HS874C20 Human DNA sequence from clone RP5-874C20 on chromosome 6p22.1-22.3
            Contains the 5' end of a novel protein similar to zinc
            finger protein 306 (ZNF306, ZFP47), the gene for a novel
            C2H2 type zinc finger protein, a novel gene, a zinc
            finger protein SRE-ZBP pseudogene and a CpG island,
            complete sequence
          Length = 97847

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 143  tggacttgataggccacttgacaa 166
            |||| |||||||||||||||||||
Sbjct: 8175 tggatttgataggccacttgacaa 8198
to top
>gb|AY117264.1| Arabidopsis thaliana unknown protein (At4g34370) mRNA, complete cds
          Length = 1825

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 237 tttgctgtctttgttgagaaagga 260
           |||||||| |||||||||||||||
Sbjct: 256 tttgctgtgtttgttgagaaagga 279
to top
>gb|AY050864.1| Arabidopsis thaliana unknown protein (At4g34370) mRNA, complete cds
          Length = 2296

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 237 tttgctgtctttgttgagaaagga 260
           |||||||| |||||||||||||||
Sbjct: 470 tttgctgtgtttgttgagaaagga 493
to top
>emb|AL161585.2|ATCHRIV81 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 81
          Length = 195921

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 237   tttgctgtctttgttgagaaagga 260
             |||||||| |||||||||||||||
Sbjct: 80906 tttgctgtgtttgttgagaaagga 80929
to top
>emb|AL035521.1|ATF10M10 Arabidopsis thaliana DNA chromosome 4, BAC clone F10M10 (ESSA project)
          Length = 114367

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 237   tttgctgtctttgttgagaaagga 260
             |||||||| |||||||||||||||
Sbjct: 72387 tttgctgtgtttgttgagaaagga 72410
to top
>emb|BX897714.6| Zebrafish DNA sequence from clone DKEY-218L23 in linkage group 25,
             complete sequence
          Length = 184435

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 411   caaaacatttttgctaaata 430
             ||||||||||||||||||||
Sbjct: 57213 caaaacatttttgctaaata 57232
to top
>emb|CR937026.1|PT085P01 Pan troglodytes chromosome 11 BAC PTB-085P01, complete sequence
          Length = 218832

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 339   atttttgtcatctttaattt 358
             ||||||||||||||||||||
Sbjct: 51315 atttttgtcatctttaattt 51334
to top
>emb|BX470259.9| Zebrafish DNA sequence from clone CH211-225N18 in linkage group 15,
              complete sequence
          Length = 188687

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 414    aacatttttgctaaataaat 433
              ||||||||||||||||||||
Sbjct: 178647 aacatttttgctaaataaat 178666
to top
>dbj|AK123280.1| Homo sapiens cDNA FLJ41286 fis, clone BRAMY2038475
          Length = 2313

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 143 tggacttgataggccacttgacaa 166
           |||| |||||||||||||||||||
Sbjct: 370 tggatttgataggccacttgacaa 393
to top
>gb|AC022363.24| Homo sapiens 12 BAC RP11-1151B7 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 114933

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 350   ctttaatttgtagtttgcct 369
             ||||||||||||||||||||
Sbjct: 48348 ctttaatttgtagtttgcct 48329
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 25       aactgccccttttgcggcga 44
                ||||||||||||||||||||
Sbjct: 14882498 aactgccccttttgcggcga 14882517
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 77       tcgacgacgagcacgccgtc 96
                ||||||||||||||||||||
Sbjct: 18386042 tcgacgacgagcacgccgtc 18386023
to top
>emb|BX255890.6| Zebrafish DNA sequence from clone CH211-236L15, complete sequence
          Length = 175490

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 346   tcatctttaatttgtagttt 365
             ||||||||||||||||||||
Sbjct: 68725 tcatctttaatttgtagttt 68744
to top
>gb|AC005678.1|AC005678 Homo sapiens PAC clone RP11-569I24 from 7, complete sequence
          Length = 187543

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 143   tggacttgataggccacttgacaa 166
             |||| |||||||||||||||||||
Sbjct: 19603 tggatttgataggccacttgacaa 19580
to top
>gb|AC003667.3| Homo sapiens X PAC RP1-17L20 (Roswell Park Cancer Institute Human PAC
              Library) complete sequence
          Length = 147371

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 414    aacatttttgctaaataaattccc 437
              ||||||||||| ||||||||||||
Sbjct: 111313 aacatttttgcaaaataaattccc 111336
to top
>gb|AC122335.4| Mus musculus BAC clone RP23-350F7 from chromosome 10, complete sequence
          Length = 193300

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 409    gacaaaacatttttgctaaa 428
              ||||||||||||||||||||
Sbjct: 168062 gacaaaacatttttgctaaa 168043
to top
>dbj|AP005928.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBb0031F23
          Length = 128090

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 25    aactgccccttttgcggcga 44
             ||||||||||||||||||||
Sbjct: 97771 aactgccccttttgcggcga 97790
to top
>dbj|AP004861.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0001A11
          Length = 153252

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 77    tcgacgacgagcacgccgtc 96
             ||||||||||||||||||||
Sbjct: 48966 tcgacgacgagcacgccgtc 48947
to top
>gb|AC132867.6| Mus musculus chromosome 1, clone RP24-388I23, complete sequence
          Length = 209151

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 427    aataaattcccagatgaaaa 446
              ||||||||||||||||||||
Sbjct: 208394 aataaattcccagatgaaaa 208413
to top
>gb|AC110572.13| Mus musculus chromosome 5, clone RP23-316P20, complete sequence
          Length = 170850

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 541   tgatagatctccacattatatatt 564
             |||||||||||||| |||||||||
Sbjct: 47767 tgatagatctccactttatatatt 47744
to top
>gb|AC118643.6| Mus musculus chromosome 1, clone RP24-113H21, complete sequence
          Length = 184206

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 427    aataaattcccagatgaaaa 446
              ||||||||||||||||||||
Sbjct: 141751 aataaattcccagatgaaaa 141732
to top
>emb|AJ510204.1|ATH510204 Arabidopsis thaliana ari1 gene for ARIADNE-like protein ARI1, exons
           1-6
          Length = 2491

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 237 tttgctgtctttgttgagaaagga 260
           |||||||| |||||||||||||||
Sbjct: 663 tttgctgtgtttgttgagaaagga 686
to top
>emb|AL672106.9| Mouse DNA sequence from clone RP23-372E6 on chromosome X, complete
             sequence
          Length = 121764

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 543   atagatctccacattatatatttt 566
             ||||||||||||| ||||||||||
Sbjct: 59062 atagatctccacaatatatatttt 59085


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,821,907
Number of Sequences: 3902068
Number of extensions: 5821907
Number of successful extensions: 124983
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 124321
Number of HSP's gapped (non-prelim): 662
length of query: 601
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 578
effective length of database: 17,143,297,704
effective search space: 9908826072912
effective search space used: 9908826072912
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top