ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd21e04 |
|---|---|
| Clone Library Name | barley_pub |
>SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)| Length = 303 Score = 76.3 bits (186), Expect = 5e-14 Identities = 32/45 (71%), Positives = 39/45 (86%) Frame = +1 Query: 10 REGGGTIGIADYTNYDDMKYAIKKLDDTEFKNAFSKGYIRVKEYD 144 R+ GT G+ DYT Y+DMKYA+KKLDDTEF+NAFS GY+RV+EYD Sbjct: 152 RDARGTTGVVDYTCYEDMKYALKKLDDTEFRNAFSNGYVRVREYD 196
>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)| (CeSF2/ASF) Length = 258 Score = 44.3 bits (103), Expect = 2e-04 Identities = 18/37 (48%), Positives = 30/37 (81%), Gaps = 1/37 (2%) Frame = +1 Query: 31 GIADYTNYDDMKYAIKKLDDTEFKNAFSK-GYIRVKE 138 G+ ++T Y+D+KYA++KLDDT+F++ + YIRV+E Sbjct: 160 GVVEFTRYEDVKYAVRKLDDTKFRSHEGETAYIRVRE 196
>SFRS9_HUMAN (Q13242) Splicing factor, arginine/serine-rich 9 (Pre-mRNA-splicing| factor SRp30C) Length = 221 Score = 37.4 bits (85), Expect = 0.028 Identities = 16/36 (44%), Positives = 27/36 (75%), Gaps = 1/36 (2%) Frame = +1 Query: 28 IGIADYTNYDDMKYAIKKLDDTEFKNAFSK-GYIRV 132 +G+ +Y +DM+YA++KLDDT+F++ + YIRV Sbjct: 147 VGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYIRV 182
>SFRS9_RAT (Q5PPI1) Splicing factor, arginine/serine-rich 9| Length = 221 Score = 36.6 bits (83), Expect = 0.048 Identities = 16/36 (44%), Positives = 27/36 (75%), Gaps = 1/36 (2%) Frame = +1 Query: 28 IGIADYTNYDDMKYAIKKLDDTEFKNAFSK-GYIRV 132 +G+ +Y +DM+YA++KLDDT+F++ + YIRV Sbjct: 147 MGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYIRV 182
>SFRS9_MOUSE (Q9D0B0) Splicing factor, arginine/serine-rich 9| Length = 222 Score = 36.6 bits (83), Expect = 0.048 Identities = 16/36 (44%), Positives = 27/36 (75%), Gaps = 1/36 (2%) Frame = +1 Query: 28 IGIADYTNYDDMKYAIKKLDDTEFKNAFSK-GYIRV 132 +G+ +Y +DM+YA++KLDDT+F++ + YIRV Sbjct: 148 MGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYIRV 183
>SFRS1_PONPY (Q5R7H2) Splicing factor, arginine/serine-rich 1| Length = 247 Score = 35.4 bits (80), Expect = 0.11 Identities = 15/36 (41%), Positives = 26/36 (72%), Gaps = 1/36 (2%) Frame = +1 Query: 31 GIADYTNYDDMKYAIKKLDDTEFKNAFSK-GYIRVK 135 G+ ++ +DM YA++KLD+T+F++ + YIRVK Sbjct: 157 GVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 192
>SFRS1_MOUSE (Q6PDM2) Splicing factor, arginine/serine-rich 1| Length = 247 Score = 35.4 bits (80), Expect = 0.11 Identities = 15/36 (41%), Positives = 26/36 (72%), Gaps = 1/36 (2%) Frame = +1 Query: 31 GIADYTNYDDMKYAIKKLDDTEFKNAFSK-GYIRVK 135 G+ ++ +DM YA++KLD+T+F++ + YIRVK Sbjct: 157 GVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 192
>SFRS1_HUMAN (Q07955) Splicing factor, arginine/serine-rich 1 (pre-mRNA-splicing| factor SF2, P33 subunit) (Alternative splicing factor ASF-1) Length = 247 Score = 35.4 bits (80), Expect = 0.11 Identities = 15/36 (41%), Positives = 26/36 (72%), Gaps = 1/36 (2%) Frame = +1 Query: 31 GIADYTNYDDMKYAIKKLDDTEFKNAFSK-GYIRVK 135 G+ ++ +DM YA++KLD+T+F++ + YIRVK Sbjct: 157 GVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 192
>SFRS1_CHICK (Q5ZML3) Splicing factor, arginine/serine-rich 1| Length = 256 Score = 35.4 bits (80), Expect = 0.11 Identities = 15/36 (41%), Positives = 26/36 (72%), Gaps = 1/36 (2%) Frame = +1 Query: 31 GIADYTNYDDMKYAIKKLDDTEFKNAFSK-GYIRVK 135 G+ ++ +DM YA++KLD+T+F++ + YIRVK Sbjct: 157 GVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 192
>SFRS1_XENTR (Q6DII2) Splicing factor, arginine/serine-rich 1| Length = 267 Score = 35.4 bits (80), Expect = 0.11 Identities = 15/36 (41%), Positives = 26/36 (72%), Gaps = 1/36 (2%) Frame = +1 Query: 31 GIADYTNYDDMKYAIKKLDDTEFKNAFSK-GYIRVK 135 G+ ++ +DM YA++KLD+T+F++ + YIRVK Sbjct: 177 GVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 212
>SFRS1_BRARE (Q6NYA0) Splicing factor, arginine/serine-rich 1| Length = 245 Score = 35.4 bits (80), Expect = 0.11 Identities = 15/36 (41%), Positives = 26/36 (72%), Gaps = 1/36 (2%) Frame = +1 Query: 31 GIADYTNYDDMKYAIKKLDDTEFKNAFSK-GYIRVK 135 G+ ++ +DM YA++KLD+T+F++ + YIRVK Sbjct: 157 GVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 192
>SF1L1_BRARE (Q7SXP4) Splicing factor, arginine/serine-rich 1-like protein 1| Length = 245 Score = 35.4 bits (80), Expect = 0.11 Identities = 15/36 (41%), Positives = 26/36 (72%), Gaps = 1/36 (2%) Frame = +1 Query: 31 GIADYTNYDDMKYAIKKLDDTEFKNAFSK-GYIRVK 135 G+ ++ +DM YA++KLD+T+F++ + YIRVK Sbjct: 168 GVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 203
>PUS5_KLULA (Q6CQC4) Pseudouridylate synthase PUS5 (EC 5.4.99.-) (Pseudouridine| synthase 5) (Uracil hydrolyase PUS5) Length = 299 Score = 32.0 bits (71), Expect = 1.2 Identities = 14/34 (41%), Positives = 21/34 (61%) Frame = +1 Query: 34 IADYTNYDDMKYAIKKLDDTEFKNAFSKGYIRVK 135 + D Y+D+KY KK+ D++F+ A YIR K Sbjct: 197 VLDSPIYNDLKYGGKKVFDSDFQIALHSAYIRTK 230
>SRR55_DROME (P26686) Serine-arginine protein 55 (SRP55) (Protein enhancer of| deformed) (52-kDa bracketing protein) (B52 protein) Length = 375 Score = 30.8 bits (68), Expect = 2.6 Identities = 12/22 (54%), Positives = 17/22 (77%) Frame = +1 Query: 31 GIADYTNYDDMKYAIKKLDDTE 96 G+ ++ + DMK AI+KLDDTE Sbjct: 158 GVVEFASLSDMKTAIEKLDDTE 179
>SFRS4_MOUSE (Q8VE97) Splicing factor, arginine/serine-rich 4| Length = 489 Score = 30.0 bits (66), Expect = 4.5 Identities = 11/22 (50%), Positives = 17/22 (77%) Frame = +1 Query: 31 GIADYTNYDDMKYAIKKLDDTE 96 G+ ++ +Y DMK A++KLD TE Sbjct: 143 GVIEFVSYSDMKRALEKLDGTE 164
>SFRS4_HUMAN (Q08170) Splicing factor, arginine/serine-rich 4 (Pre-mRNA-splicing| factor SRP75) (SRP001LB) Length = 494 Score = 30.0 bits (66), Expect = 4.5 Identities = 11/22 (50%), Positives = 17/22 (77%) Frame = +1 Query: 31 GIADYTNYDDMKYAIKKLDDTE 96 G+ ++ +Y DMK A++KLD TE Sbjct: 143 GVIEFVSYSDMKRALEKLDGTE 164
>SFRS6_HUMAN (Q13247) Splicing factor, arginine/serine-rich 6 (Pre-mRNA-splicing| factor SRP55) Length = 344 Score = 28.9 bits (63), Expect = 10.0 Identities = 11/22 (50%), Positives = 16/22 (72%) Frame = +1 Query: 31 GIADYTNYDDMKYAIKKLDDTE 96 G+ ++ +Y DMK A+ KLD TE Sbjct: 149 GVIEFRSYSDMKRALDKLDGTE 170 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,489,766 Number of Sequences: 219361 Number of extensions: 1120839 Number of successful extensions: 2997 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 2930 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2997 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4430660157 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
