ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd21d12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_470331.1| Oryza sativa (japonica cultivar-group), mRNA 258 2e-65
2ref|XM_470330.1| Oryza sativa (japonica cultivar-group), mRNA 258 2e-65
3dbj|AK105896.1| Oryza sativa (japonica cultivar-group) cDNA clon... 258 2e-65
4dbj|AK061773.1| Oryza sativa (japonica cultivar-group) cDNA clon... 258 2e-65
5dbj|AK098986.1| Oryza sativa (japonica cultivar-group) cDNA clon... 250 4e-63
6gb|BT018571.1| Zea mays clone EL01N0442H06.d mRNA sequence 190 3e-45
7gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 180 3e-42
8gb|AC092557.7| Oryza sativa chromosome 3 BAC OSJNBa0096I06 genom... 180 3e-42
9dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 180 3e-42
10dbj|AK064539.1| Oryza sativa (japonica cultivar-group) cDNA clon... 180 3e-42
11gb|AY107426.1| Zea mays PCO089573 mRNA sequence 117 4e-23
12gb|AC139758.3| Mus musculus BAC clone RP23-367E7 from chromosome... 42 1.7
13gb|AC126243.3| Mus musculus BAC clone RP24-260I19 from chromosom... 42 1.7
14gb|AC010409.6|AC010409 Homo sapiens chromosome 5 clone CTD-2158P... 42 1.7
15gb|AC024564.4|AC024564 Homo sapiens chromosome 5 clone CTC-532M5... 42 1.7
16emb|AL163195.5|CNS01RIH Human chromosome 14 DNA sequence BAC R-1... 42 1.7
17gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome 40 6.6
18gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 40 6.6
19gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 6.6
20emb|CR974571.9| Mouse DNA sequence from clone RP23-145P19 on chr... 40 6.6
21emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 40 6.6
22gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 6.6
23gb|AC027285.4| Mus musculus strain C57BL6/J chromosome 6 clone R... 40 6.6
24gb|AC117530.2| Homo sapiens chromosome 5 clone RP11-294P1, compl... 40 6.6
25dbj|AP007161.1| Aspergillus oryzae RIB40 genomic DNA, SC012 40 6.6
26gb|AC153836.5| Mus musculus 6 BAC RP23-479D21 (Roswell Park Canc... 40 6.6
27gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 40 6.6
28gb|AC153905.5| Mus musculus 6 BAC RP23-215A7 (Roswell Park Cance... 40 6.6
29gb|AC153601.6| Mus musculus 6 BAC RP23-405O6 (Roswell Park Cance... 40 6.6
30gb|CP000231.1| Rhodospirillum rubrum ATCC 11170 plasmid, complet... 40 6.6
31emb|AL691453.7| Mouse DNA sequence from clone RP23-17K2 on chrom... 40 6.6

>ref|XM_470331.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1375

 Score =  258 bits (130), Expect = 2e-65
 Identities = 259/302 (85%)
 Strand = Plus / Plus

                                                                       
Query: 145 gaggttcttgttgcggattcagacgtgtttgcgcatcctttagccgagccttgggccgag 204
           |||||||||||||| |||||||| || ||||||||||| || || |||||||||||||||
Sbjct: 405 gaggttcttgttgctgattcagatgtctttgcgcatccattggctgagccttgggccgag 464

                                                                       
Query: 205 ctgctccgctccgtgcagcagaaaggtggatactctcatgtgatagcctcgtcgacgtcg 264
           || || || || || ||||| |||||||||||||| ||||| ||||| || || || |||
Sbjct: 465 ctacttcgttctgttcagcacaaaggtggatactcacatgttatagcgtcatcaacctcg 524

                                                                       
Query: 265 ttcgggaagaatttgcttccacgcgccgcggctcttctagatgtctcccctgtcacggac 324
           ||||||||||||||||||||||| || || || ||||| ||||| |||||||| ||||| 
Sbjct: 525 ttcgggaagaatttgcttccacgtgctgctgcccttcttgatgtgtcccctgttacggat 584

                                                                       
Query: 325 gtcactgccatatctgaaccatgggtctttgtgaggccaatttatgctggaaatgcactc 384
           |||||| | |||||||| ||| | |||||||||||||| ||||||||||||||||| || 
Sbjct: 585 gtcacttcaatatctgagccacgagtctttgtgaggcccatttatgctggaaatgcgctt 644

                                                                       
Query: 385 tgcactgtacgatataccggggagtctccttgtatgatgagtattagatcaacatcattt 444
           || ||||| |||||||| || |||  ||| ||||||||||| ||||| ||||||||||||
Sbjct: 645 tgtactgtgcgatatactggagaggatccatgtatgatgagcattaggtcaacatcattt 704

             
Query: 445 tc 446
           ||
Sbjct: 705 tc 706



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                          
Query: 61  gtgagcacactgatcatagcggagcacgaaggcgggctcgtgaagcc 107
           |||||||| ||| || |||||||||||||||| ||| ||||||||||
Sbjct: 222 gtgagcacgctggtcgtagcggagcacgaaggtgggttcgtgaagcc 268



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>ref|XM_470330.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1437

 Score =  258 bits (130), Expect = 2e-65
 Identities = 259/302 (85%)
 Strand = Plus / Plus

                                                                       
Query: 145 gaggttcttgttgcggattcagacgtgtttgcgcatcctttagccgagccttgggccgag 204
           |||||||||||||| |||||||| || ||||||||||| || || |||||||||||||||
Sbjct: 420 gaggttcttgttgctgattcagatgtctttgcgcatccattggctgagccttgggccgag 479

                                                                       
Query: 205 ctgctccgctccgtgcagcagaaaggtggatactctcatgtgatagcctcgtcgacgtcg 264
           || || || || || ||||| |||||||||||||| ||||| ||||| || || || |||
Sbjct: 480 ctacttcgttctgttcagcacaaaggtggatactcacatgttatagcgtcatcaacctcg 539

                                                                       
Query: 265 ttcgggaagaatttgcttccacgcgccgcggctcttctagatgtctcccctgtcacggac 324
           ||||||||||||||||||||||| || || || ||||| ||||| |||||||| ||||| 
Sbjct: 540 ttcgggaagaatttgcttccacgtgctgctgcccttcttgatgtgtcccctgttacggat 599

                                                                       
Query: 325 gtcactgccatatctgaaccatgggtctttgtgaggccaatttatgctggaaatgcactc 384
           |||||| | |||||||| ||| | |||||||||||||| ||||||||||||||||| || 
Sbjct: 600 gtcacttcaatatctgagccacgagtctttgtgaggcccatttatgctggaaatgcgctt 659

                                                                       
Query: 385 tgcactgtacgatataccggggagtctccttgtatgatgagtattagatcaacatcattt 444
           || ||||| |||||||| || |||  ||| ||||||||||| ||||| ||||||||||||
Sbjct: 660 tgtactgtgcgatatactggagaggatccatgtatgatgagcattaggtcaacatcattt 719

             
Query: 445 tc 446
           ||
Sbjct: 720 tc 721



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                          
Query: 61  gtgagcacactgatcatagcggagcacgaaggcgggctcgtgaagcc 107
           |||||||| ||| || |||||||||||||||| ||| ||||||||||
Sbjct: 237 gtgagcacgctggtcgtagcggagcacgaaggtgggttcgtgaagcc 283



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>dbj|AK105896.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-F02, full
           insert sequence
          Length = 1368

 Score =  258 bits (130), Expect = 2e-65
 Identities = 259/302 (85%)
 Strand = Plus / Plus

                                                                       
Query: 145 gaggttcttgttgcggattcagacgtgtttgcgcatcctttagccgagccttgggccgag 204
           |||||||||||||| |||||||| || ||||||||||| || || |||||||||||||||
Sbjct: 444 gaggttcttgttgctgattcagatgtctttgcgcatccattggctgagccttgggccgag 503

                                                                       
Query: 205 ctgctccgctccgtgcagcagaaaggtggatactctcatgtgatagcctcgtcgacgtcg 264
           || || || || || ||||| |||||||||||||| ||||| ||||| || || || |||
Sbjct: 504 ctacttcgttctgttcagcacaaaggtggatactcacatgttatagcgtcatcaacctcg 563

                                                                       
Query: 265 ttcgggaagaatttgcttccacgcgccgcggctcttctagatgtctcccctgtcacggac 324
           ||||||||||||||||||||||| || || || ||||| ||||| |||||||| ||||| 
Sbjct: 564 ttcgggaagaatttgcttccacgtgctgctgcccttcttgatgtgtcccctgttacggat 623

                                                                       
Query: 325 gtcactgccatatctgaaccatgggtctttgtgaggccaatttatgctggaaatgcactc 384
           |||||| | |||||||| ||| | |||||||||||||| ||||||||||||||||| || 
Sbjct: 624 gtcacttcaatatctgagccacgagtctttgtgaggcccatttatgctggaaatgcgctt 683

                                                                       
Query: 385 tgcactgtacgatataccggggagtctccttgtatgatgagtattagatcaacatcattt 444
           || ||||| |||||||| || |||  ||| ||||||||||| ||||| ||||||||||||
Sbjct: 684 tgtactgtgcgatatactggagaggatccatgtatgatgagcattaggtcaacatcattt 743

             
Query: 445 tc 446
           ||
Sbjct: 744 tc 745



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                          
Query: 61  gtgagcacactgatcatagcggagcacgaaggcgggctcgtgaagcc 107
           |||||||| ||| || |||||||||||||||| ||| ||||||||||
Sbjct: 261 gtgagcacgctggtcgtagcggagcacgaaggtgggttcgtgaagcc 307



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>dbj|AK061773.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-D01, full
           insert sequence
          Length = 1368

 Score =  258 bits (130), Expect = 2e-65
 Identities = 259/302 (85%)
 Strand = Plus / Plus

                                                                       
Query: 145 gaggttcttgttgcggattcagacgtgtttgcgcatcctttagccgagccttgggccgag 204
           |||||||||||||| |||||||| || ||||||||||| || || |||||||||||||||
Sbjct: 444 gaggttcttgttgctgattcagatgtctttgcgcatccattggctgagccttgggccgag 503

                                                                       
Query: 205 ctgctccgctccgtgcagcagaaaggtggatactctcatgtgatagcctcgtcgacgtcg 264
           || || || || || ||||| |||||||||||||| ||||| ||||| || || || |||
Sbjct: 504 ctacttcgttctgttcagcacaaaggtggatactcacatgttatagcgtcatcaacctcg 563

                                                                       
Query: 265 ttcgggaagaatttgcttccacgcgccgcggctcttctagatgtctcccctgtcacggac 324
           ||||||||||||||||||||||| || || || ||||| ||||| |||||||| ||||| 
Sbjct: 564 ttcgggaagaatttgcttccacgtgctgctgcccttcttgatgtgtcccctgttacggat 623

                                                                       
Query: 325 gtcactgccatatctgaaccatgggtctttgtgaggccaatttatgctggaaatgcactc 384
           |||||| | |||||||| ||| | |||||||||||||| ||||||||||||||||| || 
Sbjct: 624 gtcacttcaatatctgagccacgagtctttgtgaggcccatttatgctggaaatgcgctt 683

                                                                       
Query: 385 tgcactgtacgatataccggggagtctccttgtatgatgagtattagatcaacatcattt 444
           || ||||| |||||||| || |||  ||| ||||||||||| ||||| ||||||||||||
Sbjct: 684 tgtactgtgcgatatactggagaggatccatgtatgatgagcattaggtcaacatcattt 743

             
Query: 445 tc 446
           ||
Sbjct: 744 tc 745



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                          
Query: 61  gtgagcacactgatcatagcggagcacgaaggcgggctcgtgaagcc 107
           |||||||| ||| || |||||||||||||||| ||| ||||||||||
Sbjct: 261 gtgagcacgctggtcgtagcggagcacgaaggtgggttcgtgaagcc 307



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>dbj|AK098986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093P06, full
           insert sequence
          Length = 1320

 Score =  250 bits (126), Expect = 4e-63
 Identities = 258/302 (85%)
 Strand = Plus / Plus

                                                                       
Query: 145 gaggttcttgttgcggattcagacgtgtttgcgcatcctttagccgagccttgggccgag 204
           |||||||||||||| |||||||| || ||||||||||| || || |||||||||||||||
Sbjct: 432 gaggttcttgttgctgattcagatgtctttgcgcatccattggctgagccttgggccgag 491

                                                                       
Query: 205 ctgctccgctccgtgcagcagaaaggtggatactctcatgtgatagcctcgtcgacgtcg 264
           || || || || || ||||| |||||||||||||| ||||| ||||| || || || |||
Sbjct: 492 ctacttcgttctgttcagcacaaaggtggatactcacatgttatagcgtcatcaacctcg 551

                                                                       
Query: 265 ttcgggaagaatttgcttccacgcgccgcggctcttctagatgtctcccctgtcacggac 324
           ||||||||||||||||||||||| || || || ||||| ||||| |||||||| ||||| 
Sbjct: 552 ttcgggaagaatttgcttccacgtgctgctgcccttcttgatgtgtcccctgttacggat 611

                                                                       
Query: 325 gtcactgccatatctgaaccatgggtctttgtgaggccaatttatgctggaaatgcactc 384
           |||||| | |||||||| ||| | |||||||||||||| ||||||||||||||||| || 
Sbjct: 612 gtcacttcaatatctgagccacgagtctttgtgaggcccatttatgctggaaatgcgctt 671

                                                                       
Query: 385 tgcactgtacgatataccggggagtctccttgtatgatgagtattagatcaacatcattt 444
           || ||||| |||||||| || |||  ||| ||||||||| | ||||| ||||||||||||
Sbjct: 672 tgtactgtgcgatatactggagaggatccatgtatgatgggcattaggtcaacatcattt 731

             
Query: 445 tc 446
           ||
Sbjct: 732 tc 733



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                          
Query: 61  gtgagcacactgatcatagcggagcacgaaggcgggctcgtgaagcc 107
           |||||||| ||| || |||||||||||||||| ||| ||||||||||
Sbjct: 249 gtgagcacgctggtcgtagcggagcacgaaggtgggttcgtgaagcc 295



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>gb|BT018571.1| Zea mays clone EL01N0442H06.d mRNA sequence
          Length = 1324

 Score =  190 bits (96), Expect = 3e-45
 Identities = 255/308 (82%)
 Strand = Plus / Minus

                                                                        
Query: 175  gcgcatcctttagccgagccttgggccgagctgctccgctccgtgcagcagaaaggtgga 234
            ||||||||| | || || || ||||||||||| ||||| ||||| ||||||||||| || 
Sbjct: 1021 gcgcatcctctggctgaaccctgggccgagctactccgttccgttcagcagaaaggaggc 962

                                                                        
Query: 235  tactctcatgtgatagcctcgtcgacgtcgttcgggaagaatttgcttccacgcgccgcg 294
            ||||||||||| ||||| || || || || ||||||||||||||||||||||| || |||
Sbjct: 961  tactctcatgtcatagcttcatccacatcattcgggaagaatttgcttccacgtgctgcg 902

                                                                        
Query: 295  gctcttctagatgtctcccctgtcacggacgtcactgccatatctgaaccatgggtcttt 354
            ||||| || ||||| |||||||| || || ||||| ||  ||   || |||   ||||||
Sbjct: 901  gctctccttgatgtgtcccctgttactgatgtcaccgctgtaaaggagccacacgtcttt 842

                                                                        
Query: 355  gtgaggccaatttatgctggaaatgcactctgcactgtacgatataccggggagtctcct 414
            ||||||||||||||||||||||||||||| || |||||   |||||| || |||   |||
Sbjct: 841  gtgaggccaatttatgctggaaatgcactttgtactgtgaaatatactggagaggggcct 782

                                                                        
Query: 415  tgtatgatgagtattagatcaacatcattttctctagctaccgagtctatgtcagaaact 474
            || |||||||||||||||||||| |||||||| | |||||| ||| ||||||| ||||| 
Sbjct: 781  tgcatgatgagtattagatcaacttcattttccccagctactgaggctatgtctgaaaca 722

                    
Query: 475  aaagttgc 482
            || |||||
Sbjct: 721  aaggttgc 714



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                             
Query: 59   tcgtgagcacactgatcatagcggagcacgaaggcgggctcgtgaagcc 107
            |||||||||| ||  || |||||||||||||||||||| |||| |||||
Sbjct: 1233 tcgtgagcacgctcgtcgtagcggagcacgaaggcgggttcgtcaagcc 1185



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  180 bits (91), Expect = 3e-42
 Identities = 184/215 (85%)
 Strand = Plus / Plus

                                                                            
Query: 146      aggttcttgttgcggattcagacgtgtttgcgcatcctttagccgagccttgggccgagc 205
                ||||||||||||| |||||||| || ||||||||||| || || ||||||||||||||||
Sbjct: 34797258 aggttcttgttgctgattcagatgtctttgcgcatccattggctgagccttgggccgagc 34797317

                                                                            
Query: 206      tgctccgctccgtgcagcagaaaggtggatactctcatgtgatagcctcgtcgacgtcgt 265
                | || || || || ||||| |||||||||||||| ||||| ||||| || || || ||||
Sbjct: 34797318 tacttcgttctgttcagcacaaaggtggatactcacatgttatagcgtcatcaacctcgt 34797377

                                                                            
Query: 266      tcgggaagaatttgcttccacgcgccgcggctcttctagatgtctcccctgtcacggacg 325
                |||||||||||||||||||||| || || || ||||| ||||| |||||||| ||||| |
Sbjct: 34797378 tcgggaagaatttgcttccacgtgctgctgcccttcttgatgtgtcccctgttacggatg 34797437

                                                   
Query: 326      tcactgccatatctgaaccatgggtctttgtgagg 360
                ||||| | |||||||| ||| | ||||||||||||
Sbjct: 34797438 tcacttcaatatctgagccacgagtctttgtgagg 34797472



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 77/89 (86%)
 Strand = Plus / Plus

                                                                            
Query: 358      aggccaatttatgctggaaatgcactctgcactgtacgatataccggggagtctccttgt 417
                ||||| ||||||||||||||||| || || ||||| |||||||| || |||  ||| |||
Sbjct: 34798087 aggcccatttatgctggaaatgcgctttgtactgtgcgatatactggagaggatccatgt 34798146

                                             
Query: 418      atgatgagtattagatcaacatcattttc 446
                |||||||| ||||| ||||||||||||||
Sbjct: 34798147 atgatgagcattaggtcaacatcattttc 34798175



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                               
Query: 61       gtgagcacactgatcatagcggagcacgaaggcgggctcgtgaagcc 107
                |||||||| ||| || |||||||||||||||| ||| ||||||||||
Sbjct: 34796918 gtgagcacgctggtcgtagcggagcacgaaggtgggttcgtgaagcc 34796964



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>gb|AC092557.7| Oryza sativa chromosome 3 BAC OSJNBa0096I06 genomic sequence, complete
             sequence
          Length = 164352

 Score =  180 bits (91), Expect = 3e-42
 Identities = 184/215 (85%)
 Strand = Plus / Minus

                                                                         
Query: 146   aggttcttgttgcggattcagacgtgtttgcgcatcctttagccgagccttgggccgagc 205
             ||||||||||||| |||||||| || ||||||||||| || || ||||||||||||||||
Sbjct: 65392 aggttcttgttgctgattcagatgtctttgcgcatccattggctgagccttgggccgagc 65333

                                                                         
Query: 206   tgctccgctccgtgcagcagaaaggtggatactctcatgtgatagcctcgtcgacgtcgt 265
             | || || || || ||||| |||||||||||||| ||||| ||||| || || || ||||
Sbjct: 65332 tacttcgttctgttcagcacaaaggtggatactcacatgttatagcgtcatcaacctcgt 65273

                                                                         
Query: 266   tcgggaagaatttgcttccacgcgccgcggctcttctagatgtctcccctgtcacggacg 325
             |||||||||||||||||||||| || || || ||||| ||||| |||||||| ||||| |
Sbjct: 65272 tcgggaagaatttgcttccacgtgctgctgcccttcttgatgtgtcccctgttacggatg 65213

                                                
Query: 326   tcactgccatatctgaaccatgggtctttgtgagg 360
             ||||| | |||||||| ||| | ||||||||||||
Sbjct: 65212 tcacttcaatatctgagccacgagtctttgtgagg 65178



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 77/89 (86%)
 Strand = Plus / Minus

                                                                         
Query: 358   aggccaatttatgctggaaatgcactctgcactgtacgatataccggggagtctccttgt 417
             ||||| ||||||||||||||||| || || ||||| |||||||| || |||  ||| |||
Sbjct: 64563 aggcccatttatgctggaaatgcgctttgtactgtgcgatatactggagaggatccatgt 64504

                                          
Query: 418   atgatgagtattagatcaacatcattttc 446
             |||||||| ||||| ||||||||||||||
Sbjct: 64503 atgatgagcattaggtcaacatcattttc 64475



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                            
Query: 61    gtgagcacactgatcatagcggagcacgaaggcgggctcgtgaagcc 107
             |||||||| ||| || |||||||||||||||| ||| ||||||||||
Sbjct: 65732 gtgagcacgctggtcgtagcggagcacgaaggtgggttcgtgaagcc 65686



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  180 bits (91), Expect = 3e-42
 Identities = 184/215 (85%)
 Strand = Plus / Plus

                                                                            
Query: 146      aggttcttgttgcggattcagacgtgtttgcgcatcctttagccgagccttgggccgagc 205
                ||||||||||||| |||||||| || ||||||||||| || || ||||||||||||||||
Sbjct: 34887330 aggttcttgttgctgattcagatgtctttgcgcatccattggctgagccttgggccgagc 34887389

                                                                            
Query: 206      tgctccgctccgtgcagcagaaaggtggatactctcatgtgatagcctcgtcgacgtcgt 265
                | || || || || ||||| |||||||||||||| ||||| ||||| || || || ||||
Sbjct: 34887390 tacttcgttctgttcagcacaaaggtggatactcacatgttatagcgtcatcaacctcgt 34887449

                                                                            
Query: 266      tcgggaagaatttgcttccacgcgccgcggctcttctagatgtctcccctgtcacggacg 325
                |||||||||||||||||||||| || || || ||||| ||||| |||||||| ||||| |
Sbjct: 34887450 tcgggaagaatttgcttccacgtgctgctgcccttcttgatgtgtcccctgttacggatg 34887509

                                                   
Query: 326      tcactgccatatctgaaccatgggtctttgtgagg 360
                ||||| | |||||||| ||| | ||||||||||||
Sbjct: 34887510 tcacttcaatatctgagccacgagtctttgtgagg 34887544



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 77/89 (86%)
 Strand = Plus / Plus

                                                                            
Query: 358      aggccaatttatgctggaaatgcactctgcactgtacgatataccggggagtctccttgt 417
                ||||| ||||||||||||||||| || || ||||| |||||||| || |||  ||| |||
Sbjct: 34888159 aggcccatttatgctggaaatgcgctttgtactgtgcgatatactggagaggatccatgt 34888218

                                             
Query: 418      atgatgagtattagatcaacatcattttc 446
                |||||||| ||||| ||||||||||||||
Sbjct: 34888219 atgatgagcattaggtcaacatcattttc 34888247



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                               
Query: 61       gtgagcacactgatcatagcggagcacgaaggcgggctcgtgaagcc 107
                |||||||| ||| || |||||||||||||||| ||| ||||||||||
Sbjct: 34886990 gtgagcacgctggtcgtagcggagcacgaaggtgggttcgtgaagcc 34887036



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>dbj|AK064539.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-112-A02, full
           insert sequence
          Length = 1585

 Score =  180 bits (91), Expect = 3e-42
 Identities = 184/215 (85%)
 Strand = Plus / Minus

                                                                       
Query: 146 aggttcttgttgcggattcagacgtgtttgcgcatcctttagccgagccttgggccgagc 205
           ||||||||||||| |||||||| || ||||||||||| || || ||||||||||||||||
Sbjct: 549 aggttcttgttgctgattcagatgtctttgcgcatccattggctgagccttgggccgagc 490

                                                                       
Query: 206 tgctccgctccgtgcagcagaaaggtggatactctcatgtgatagcctcgtcgacgtcgt 265
           | || || || || ||||| |||||||||||||| ||||| ||||| || || || ||||
Sbjct: 489 tacttcgttctgttcagcacaaaggtggatactcacatgttatagcgtcatcaacctcgt 430

                                                                       
Query: 266 tcgggaagaatttgcttccacgcgccgcggctcttctagatgtctcccctgtcacggacg 325
           |||||||||||||||||||||| || || || ||||| ||||| |||||||| ||||| |
Sbjct: 429 tcgggaagaatttgcttccacgtgctgctgcccttcttgatgtgtcccctgttacggatg 370

                                              
Query: 326 tcactgccatatctgaaccatgggtctttgtgagg 360
           ||||| | |||||||| ||| | ||||||||||||
Sbjct: 369 tcacttcaatatctgagccacgagtctttgtgagg 335



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                          
Query: 61  gtgagcacactgatcatagcggagcacgaaggcgggctcgtgaagcc 107
           |||||||| ||| || |||||||||||||||| ||| ||||||||||
Sbjct: 889 gtgagcacgctggtcgtagcggagcacgaaggtgggttcgtgaagcc 843



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>gb|AY107426.1| Zea mays PCO089573 mRNA sequence
          Length = 686

 Score =  117 bits (59), Expect = 4e-23
 Identities = 122/143 (85%)
 Strand = Plus / Plus

                                                                       
Query: 175 gcgcatcctttagccgagccttgggccgagctgctccgctccgtgcagcagaaaggtgga 234
           ||||||||| | || || || ||||||||||| ||||| ||||| ||||||||||| || 
Sbjct: 378 gcgcatcctctggctgaaccctgggccgagctactccgttccgttcagcagaaaggaggc 437

                                                                       
Query: 235 tactctcatgtgatagcctcgtcgacgtcgttcgggaagaatttgcttccacgcgccgcg 294
           ||||||||||| ||||| || || || || ||||||||||||||||||||||| || |||
Sbjct: 438 tactctcatgtcatagcttcatccacatcattcgggaagaatttgcttccacgtgctgcg 497

                                  
Query: 295 gctcttctagatgtctcccctgt 317
           ||||| || ||||| ||||||||
Sbjct: 498 gctctccttgatgtgtcccctgt 520



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                            
Query: 59  tcgtgagcacactgatcatagcggagcacgaaggcgggctcgtgaagcc 107
           |||||||||| ||  || |||||||||||||||||||| |||| |||||
Sbjct: 166 tcgtgagcacgctcgtcgtagcggagcacgaaggcgggttcgtcaagcc 214



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>gb|AC139758.3| Mus musculus BAC clone RP23-367E7 from chromosome 14, complete sequence
          Length = 210969

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 123    gtctagccacccattggtcaa 143
              |||||||||||||||||||||
Sbjct: 149289 gtctagccacccattggtcaa 149309



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>gb|AC126243.3| Mus musculus BAC clone RP24-260I19 from chromosome 14, complete sequence
          Length = 180553

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 123    gtctagccacccattggtcaa 143
              |||||||||||||||||||||
Sbjct: 143462 gtctagccacccattggtcaa 143442



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>gb|AC010409.6|AC010409 Homo sapiens chromosome 5 clone CTD-2158P22, complete sequence
          Length = 117334

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 458   agtctatgtcagaaactaaag 478
             |||||||||||||||||||||
Sbjct: 41542 agtctatgtcagaaactaaag 41562



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>gb|AC024564.4|AC024564 Homo sapiens chromosome 5 clone CTC-532M5, complete sequence
          Length = 176621

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 458    agtctatgtcagaaactaaag 478
              |||||||||||||||||||||
Sbjct: 171086 agtctatgtcagaaactaaag 171106



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>emb|AL163195.5|CNS01RIH Human chromosome 14 DNA sequence BAC R-14J7 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 162209

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 268   gggaagaatttgcttccacgc 288
             |||||||||||||||||||||
Sbjct: 99478 gggaagaatttgcttccacgc 99458



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>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome
          Length = 2364842

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 199   gccgagctgctccgctccgt 218
             ||||||||||||||||||||
Sbjct: 49134 gccgagctgctccgctccgt 49153



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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 19      gcgggcgtcggcggcgcatc 38
               ||||||||||||||||||||
Sbjct: 3542079 gcgggcgtcggcggcgcatc 3542098



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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 19      gcgggcgtcggcggcgcatc 38
               ||||||||||||||||||||
Sbjct: 1868101 gcgggcgtcggcggcgcatc 1868082



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>emb|CR974571.9| Mouse DNA sequence from clone RP23-145P19 on chromosome 12, complete
             sequence
          Length = 219782

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 378   tgcactctgcactgtacgat 397
             ||||||||||||||||||||
Sbjct: 99479 tgcactctgcactgtacgat 99498



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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete
             sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 19    gcgggcgtcggcggcgcatc 38
             ||||||||||||||||||||
Sbjct: 29098 gcgggcgtcggcggcgcatc 29079



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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 245     tgatagcctcgtcgacgtcg 264
               ||||||||||||||||||||
Sbjct: 2594499 tgatagcctcgtcgacgtcg 2594480



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>gb|AC027285.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-40I5, complete
              sequence
          Length = 241886

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 140    tcaatgaggttcttgttgcg 159
              ||||||||||||||||||||
Sbjct: 193147 tcaatgaggttcttgttgcg 193166



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>gb|AC117530.2| Homo sapiens chromosome 5 clone RP11-294P1, complete sequence
          Length = 172442

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 268    gggaagaatttgcttccacg 287
              ||||||||||||||||||||
Sbjct: 129898 gggaagaatttgcttccacg 129917



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>dbj|AP007161.1| Aspergillus oryzae RIB40 genomic DNA, SC012
          Length = 2668010

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 231     tggatactctcatgtgatag 250
               ||||||||||||||||||||
Sbjct: 1935761 tggatactctcatgtgatag 1935742



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>gb|AC153836.5| Mus musculus 6 BAC RP23-479D21 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 231946

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 140    tcaatgaggttcttgttgcg 159
              ||||||||||||||||||||
Sbjct: 133390 tcaatgaggttcttgttgcg 133409



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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 19    gcgggcgtcggcggcgcatc 38
             ||||||||||||||||||||
Sbjct: 30128 gcgggcgtcggcggcgcatc 30109



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>gb|AC153905.5| Mus musculus 6 BAC RP23-215A7 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 215955

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 406    gagtctccttgtatgatgag 425
              ||||||||||||||||||||
Sbjct: 214964 gagtctccttgtatgatgag 214945



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>gb|AC153601.6| Mus musculus 6 BAC RP23-405O6 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 201911

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 406   gagtctccttgtatgatgag 425
             ||||||||||||||||||||
Sbjct: 46299 gagtctccttgtatgatgag 46280



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>gb|CP000231.1| Rhodospirillum rubrum ATCC 11170 plasmid, complete sequence
          Length = 53732

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 361   ccaatttatgctggaaatgc 380
             ||||||||||||||||||||
Sbjct: 49961 ccaatttatgctggaaatgc 49980



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>emb|AL691453.7| Mouse DNA sequence from clone RP23-17K2 on chromosome 4, complete
             sequence
          Length = 94498

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 411   tccttgtatgatgagtatta 430
             ||||||||||||||||||||
Sbjct: 72381 tccttgtatgatgagtatta 72362


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,113,264
Number of Sequences: 3902068
Number of extensions: 3113264
Number of successful extensions: 50014
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49672
Number of HSP's gapped (non-prelim): 341
length of query: 490
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 468
effective length of database: 17,147,199,772
effective search space: 8024889493296
effective search space used: 8024889493296
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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