ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd21d05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_470372.1| Oryza sativa (japonica cultivar-group), mRNA 88 2e-14
2gb|AC096856.7| Oryza sativa chromosome 3 BAC OSJNBa0075M12 genom... 88 2e-14
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 88 2e-14
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 88 2e-14
5gb|AC104487.3| Oryza sativa chromosome 3 BAC OSJNBa0042I09 genom... 88 2e-14
6dbj|AK067347.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 2e-14
7ref|XM_470369.1| Oryza sativa (japonica cultivar-group), mRNA 52 0.001
8ref|XM_656279.1| Aspergillus nidulans FGSC A4 hypothetical prote... 42 1.1
9ref|XM_529969.1| PREDICTED: Pan troglodytes LOC455486 (LOC455486... 40 4.2
10gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 40 4.2
11ref|NM_204735.1| Gallus gallus myosin VI (MYO6), mRNA 40 4.2
12gb|AC008267.6| Homo sapiens BAC clone GS1-124K5 from 7, complete... 40 4.2
13ref|XM_752046.1| Ustilago maydis 521 hypothetical protein (UM009... 40 4.2
14emb|BX640448.1| Bordetella bronchiseptica strain RB50, complete ... 40 4.2
15emb|BX640433.1| Bordetella parapertussis strain 12822, complete ... 40 4.2
16emb|BX640418.1| Bordetella pertussis strain Tohama I, complete g... 40 4.2
17emb|BX572596.1| Rhodopseudomonas palustris CGA009 complete genom... 40 4.2
18emb|AJ278608.1|GGA278608 Gallus gallus mRNA for myosin VI (CMY6 ... 40 4.2
19dbj|D26094.1|FVBPOAD2A Flavobacterium sp. plasmid pOAD2 DNA, who... 40 4.2
20gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome 40 4.2
21dbj|AK086686.1| Mus musculus 15 days embryo head cDNA, RIKEN ful... 40 4.2
22gb|AC018445.21| Homo sapiens chromosome 18, clone RP11-196B3, co... 40 4.2
23dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 4.2
24emb|AL645563.12| Mouse DNA sequence from clone RP23-132L14 on ch... 40 4.2 
>ref|XM_470372.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3053

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 68/76 (89%)
 Strand = Plus / Plus

                                                                        
Query: 35   gactgcgatgagatggagaggatgacgctcgccgcctcgctgtgcacgaggacatcttct 94
            ||||| ||||| |||||||||||||| ||||| || ||||||||||| ||||||||||||
Sbjct: 2446 gactgtgatgaaatggagaggatgactctcgcagcttcgctgtgcacaaggacatcttct 2505

                            
Query: 95   gattccagacccgaaa 110
             ||||| |||||||||
Sbjct: 2506 cattcccgacccgaaa 2521



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                  
Query: 227  atgcagtcccacctgaacctggcgctgctgggcgtgga 264
            |||||||| ||||||||||| ||| |||||||||||||
Sbjct: 2641 atgcagtcacacctgaacctcgcgttgctgggcgtgga 2678
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>gb|AC096856.7| Oryza sativa chromosome 3 BAC OSJNBa0075M12 genomic sequence, complete
             sequence
          Length = 130272

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 68/76 (89%)
 Strand = Plus / Minus

                                                                         
Query: 35    gactgcgatgagatggagaggatgacgctcgccgcctcgctgtgcacgaggacatcttct 94
             ||||| ||||| |||||||||||||| ||||| || ||||||||||| ||||||||||||
Sbjct: 10457 gactgtgatgaaatggagaggatgactctcgcagcttcgctgtgcacaaggacatcttct 10398

                             
Query: 95    gattccagacccgaaa 110
              ||||| |||||||||
Sbjct: 10397 cattcccgacccgaaa 10382



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                   
Query: 227   atgcagtcccacctgaacctggcgctgctgggcgtgga 264
             |||||||| ||||||||||| ||| |||||||||||||
Sbjct: 10179 atgcagtcacacctgaacctcgcgttgctgggcgtgga 10142



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 227 atgcagtcccacctgaacctggcgctgctgggcgtgga 264
           |||||||| ||||||||||| ||| |||||||||||||
Sbjct: 916 atgcagtcacacctgaacctcgcgttgctgggcgtgga 879
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 68/76 (89%)
 Strand = Plus / Minus

                                                                            
Query: 35       gactgcgatgagatggagaggatgacgctcgccgcctcgctgtgcacgaggacatcttct 94
                ||||| ||||| |||||||||||||| ||||| || ||||||||||| ||||||||||||
Sbjct: 35009556 gactgtgatgaaatggagaggatgactctcgcagcttcgctgtgcacaaggacatcttct 35009497

                                
Query: 95       gattccagacccgaaa 110
                 ||||| |||||||||
Sbjct: 35009496 cattcccgacccgaaa 35009481



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                      
Query: 227      atgcagtcccacctgaacctggcgctgctgggcgtgga 264
                |||||||| ||||||||||| ||| |||||||||||||
Sbjct: 35009278 atgcagtcacacctgaacctcgcgttgctgggcgtgga 35009241



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                      
Query: 227      atgcagtcccacctgaacctggcgctgctgggcgtgga 264
                |||||||| ||||||||||| ||| |||||||||||||
Sbjct: 35000015 atgcagtcacacctgaacctcgcgttgctgggcgtgga 34999978
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 68/76 (89%)
 Strand = Plus / Minus

                                                                            
Query: 35       gactgcgatgagatggagaggatgacgctcgccgcctcgctgtgcacgaggacatcttct 94
                ||||| ||||| |||||||||||||| ||||| || ||||||||||| ||||||||||||
Sbjct: 35099628 gactgtgatgaaatggagaggatgactctcgcagcttcgctgtgcacaaggacatcttct 35099569

                                
Query: 95       gattccagacccgaaa 110
                 ||||| |||||||||
Sbjct: 35099568 cattcccgacccgaaa 35099553



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                      
Query: 227      atgcagtcccacctgaacctggcgctgctgggcgtgga 264
                |||||||| ||||||||||| ||| |||||||||||||
Sbjct: 35099350 atgcagtcacacctgaacctcgcgttgctgggcgtgga 35099313



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                      
Query: 227      atgcagtcccacctgaacctggcgctgctgggcgtgga 264
                |||||||| ||||||||||| ||| |||||||||||||
Sbjct: 35090087 atgcagtcacacctgaacctcgcgttgctgggcgtgga 35090050
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>gb|AC104487.3| Oryza sativa chromosome 3 BAC OSJNBa0042I09 genomic sequence,
            complete sequence
          Length = 171376

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 68/76 (89%)
 Strand = Plus / Plus

                                                                        
Query: 35   gactgcgatgagatggagaggatgacgctcgccgcctcgctgtgcacgaggacatcttct 94
            ||||| ||||| |||||||||||||| ||||| || ||||||||||| ||||||||||||
Sbjct: 5924 gactgtgatgaaatggagaggatgactctcgcagcttcgctgtgcacaaggacatcttct 5983

                            
Query: 95   gattccagacccgaaa 110
             ||||| |||||||||
Sbjct: 5984 cattcccgacccgaaa 5999



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                   
Query: 227   atgcagtcccacctgaacctggcgctgctgggcgtgga 264
             |||||||| ||||||||||| ||| |||||||||||||
Sbjct: 15465 atgcagtcacacctgaacctcgcgttgctgggcgtgga 15502



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                  
Query: 227  atgcagtcccacctgaacctggcgctgctgggcgtgga 264
            |||||||| ||||||||||| ||| |||||||||||||
Sbjct: 6202 atgcagtcacacctgaacctcgcgttgctgggcgtgga 6239
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>dbj|AK067347.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106E16, full
            insert sequence
          Length = 3325

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 68/76 (89%)
 Strand = Plus / Plus

                                                                        
Query: 35   gactgcgatgagatggagaggatgacgctcgccgcctcgctgtgcacgaggacatcttct 94
            ||||| ||||| |||||||||||||| ||||| || ||||||||||| ||||||||||||
Sbjct: 2719 gactgtgatgaaatggagaggatgactctcgcagcttcgctgtgcacaaggacatcttct 2778

                            
Query: 95   gattccagacccgaaa 110
             ||||| |||||||||
Sbjct: 2779 cattcccgacccgaaa 2794



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                  
Query: 227  atgcagtcccacctgaacctggcgctgctgggcgtgga 264
            |||||||| ||||||||||| ||| |||||||||||||
Sbjct: 2914 atgcagtcacacctgaacctcgcgttgctgggcgtgga 2951
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>ref|XM_470369.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1528

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                  
Query: 227  atgcagtcccacctgaacctggcgctgctgggcgtgga 264
            |||||||| ||||||||||| ||| |||||||||||||
Sbjct: 1107 atgcagtcacacctgaacctcgcgttgctgggcgtgga 1144
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>ref|XM_656279.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN3767.2), mRNA
          Length = 3168

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 146  gagacggtccagtgggcgagg 166
            |||||||||||||||||||||
Sbjct: 1021 gagacggtccagtgggcgagg 1041
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>ref|XM_529969.1| PREDICTED: Pan troglodytes LOC455486 (LOC455486), mRNA
          Length = 924

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 250 gctgctgggcgtggacgagg 269
           ||||||||||||||||||||
Sbjct: 60  gctgctgggcgtggacgagg 41
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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 174     tgtgcgcgggctccgacgtg 193
               ||||||||||||||||||||
Sbjct: 1257212 tgtgcgcgggctccgacgtg 1257193
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>ref|NM_204735.1| Gallus gallus myosin VI (MYO6), mRNA
          Length = 3860

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 247  ggcgctgctgggcgtggacgaggaggac 274
            ||||||||||||  ||||||||||||||
Sbjct: 1152 ggcgctgctggggctggacgaggaggac 1179
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>gb|AC008267.6| Homo sapiens BAC clone GS1-124K5 from 7, complete sequence
          Length = 196954

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 37     ctgcgatgagatggagagga 56
              ||||||||||||||||||||
Sbjct: 184009 ctgcgatgagatggagagga 184028
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>ref|XM_752046.1| Ustilago maydis 521 hypothetical protein (UM00992.1) partial mRNA
          Length = 3702

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 39   gcgatgagatggagaggatgacgc 62
            |||| |||||||||||||||||||
Sbjct: 1562 gcgaggagatggagaggatgacgc 1585
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>emb|BX640448.1| Bordetella bronchiseptica strain RB50, complete genome; segment 12/16
          Length = 347137

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 238    cctgaacctggcgctgctgg 257
              ||||||||||||||||||||
Sbjct: 128843 cctgaacctggcgctgctgg 128824
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>emb|BX640433.1| Bordetella parapertussis strain 12822, complete genome; segment 11/14
          Length = 349305

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 238   cctgaacctggcgctgctgg 257
             ||||||||||||||||||||
Sbjct: 65335 cctgaacctggcgctgctgg 65316
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>emb|BX640418.1| Bordetella pertussis strain Tohama I, complete genome; segment 8/12
          Length = 349346

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 238    cctgaacctggcgctgctgg 257
              ||||||||||||||||||||
Sbjct: 130942 cctgaacctggcgctgctgg 130923
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>emb|BX572596.1| Rhodopseudomonas palustris CGA009 complete genome; segment 4/16
          Length = 348942

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 63     tcgccgcctcgctgtgcacg 82
              ||||||||||||||||||||
Sbjct: 150615 tcgccgcctcgctgtgcacg 150634
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>emb|AJ278608.1|GGA278608 Gallus gallus mRNA for myosin VI (CMY6 gene)
          Length = 3860

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 247  ggcgctgctgggcgtggacgaggaggac 274
            ||||||||||||  ||||||||||||||
Sbjct: 1152 ggcgctgctggggctggacgaggaggac 1179
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>dbj|D26094.1|FVBPOAD2A Flavobacterium sp. plasmid pOAD2 DNA, whole sequence
          Length = 45519

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 252   tgctgggcgtggacgaggag 271
             ||||||||||||||||||||
Sbjct: 12187 tgctgggcgtggacgaggag 12168
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>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 243     acctggcgctgctgggcgtg 262
               ||||||||||||||||||||
Sbjct: 1983611 acctggcgctgctgggcgtg 1983630
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>dbj|AK086686.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched
           library, clone:D930045L10 product:unclassifiable, full
           insert sequence
          Length = 1366

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 43  tgagatggagaggatgacgc 62
           ||||||||||||||||||||
Sbjct: 888 tgagatggagaggatgacgc 869
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>gb|AC018445.21| Homo sapiens chromosome 18, clone RP11-196B3, complete sequence
          Length = 162265

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 250   gctgctgggcgtggacgagg 269
             ||||||||||||||||||||
Sbjct: 16122 gctgctgggcgtggacgagg 16103
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 241     gaacctggcgctgctgggcg 260
               ||||||||||||||||||||
Sbjct: 8136895 gaacctggcgctgctgggcg 8136914
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>emb|AL645563.12| Mouse DNA sequence from clone RP23-132L14 on chromosome 4, complete
              sequence
          Length = 214456

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 43     tgagatggagaggatgacgc 62
              ||||||||||||||||||||
Sbjct: 123004 tgagatggagaggatgacgc 122985


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,015,150
Number of Sequences: 3902068
Number of extensions: 2015150
Number of successful extensions: 40338
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40085
Number of HSP's gapped (non-prelim): 253
length of query: 317
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 295
effective length of database: 17,147,199,772
effective search space: 5058423932740
effective search space used: 5058423932740
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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